Experiment set5IT047 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Glutamic acid monopotassium salt monohydrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.8 -5.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_15 -4.7 -4.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2338 -4.5 -7.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5665 -4.3 -8.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2880 -4.2 -14.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_3812 -4.0 -13.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1565 -3.8 -5.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1624 -3.8 -10.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2547 -3.8 -4.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_742 -3.7 -9.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_5666 -3.7 -4.3 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2303 -3.7 -17.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2545 -3.7 -16.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2282 -3.6 -12.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1067 -3.6 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1408 -3.6 -5.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1831 -3.6 -14.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2879 -3.5 -9.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1307 -3.5 -3.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3697 -3.5 -10.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2384 -3.4 -12.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1626 -3.4 -9.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_27 -3.4 -8.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_3833 -3.4 -13.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2548 -3.2 -9.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1434 -3.2 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2112 -3.2 -17.9 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1315 -3.2 -9.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2549 -3.1 -10.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1830 -3.1 -10.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2491 -3.0 -6.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_3506 -3.0 -9.6 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_12 -3.0 -7.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_4065 -3.0 -8.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2280 -2.9 -11.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2488 -2.9 -9.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1627 -2.9 -6.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2377 -2.8 -8.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2272 -2.8 -6.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_578 -2.7 -5.6 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2878 -2.7 -9.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1545 -2.6 -12.2 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_2490 -2.6 -8.1 Biotin synthesis protein BioC compare
Pf1N1B4_1906 -2.6 -6.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_350 -2.6 -8.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1617 -2.6 -9.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_762 -2.6 -7.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_847 -2.6 -7.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2695 -2.4 -4.0 Rare lipoprotein A precursor compare
Pf1N1B4_2912 -2.4 -3.8 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1328 -2.3 -3.8 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2487 -2.3 -8.2 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2337 -2.3 -5.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2885 -2.2 -7.7 Paraquat-inducible protein A compare
Pf1N1B4_1317 -2.2 -4.0 Sensor histidine kinase/response regulator compare
Pf1N1B4_2489 -2.1 -6.1 Biotin synthesis protein BioH compare
Pf1N1B4_3713 -2.0 -3.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_1180 -2.0 -2.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_1568 -1.9 -5.1 Twin-arginine translocation protein TatB compare
Pf1N1B4_5383 -1.8 -9.1 hypothetical protein compare
Pf1N1B4_1625 -1.8 -3.7 FIG00956267: hypothetical protein compare
Pf1N1B4_2886 -1.8 -12.0 Paraquat-inducible protein B compare
Pf1N1B4_1 -1.8 -1.7 Colicin V production protein compare
Pf1N1B4_2486 -1.8 -2.1 hypothetical protein compare
Pf1N1B4_3451 -1.8 -4.9 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_652 -1.8 -10.0 Sensory box histidine kinase compare
Pf1N1B4_241 -1.7 -4.3 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_1329 -1.6 -6.4 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_1566 -1.6 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5658 -1.6 -5.7 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf1N1B4_1057 -1.6 -3.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1462 -1.6 -10.1 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3715 -1.6 -5.0 Cobalamin synthase compare
Pf1N1B4_3711 -1.5 -6.2 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_58 -1.5 -6.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_327 -1.5 -2.5 hypothetical protein compare
Pf1N1B4_5659 -1.5 -10.1 NfuA Fe-S protein maturation compare
Pf1N1B4_3093 -1.4 -2.1 Outer membrane protein H precursor compare
Pf1N1B4_683 -1.4 -4.4 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_4038 -1.4 -2.8 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_3153 -1.4 -2.2 hypothetical protein compare
Pf1N1B4_5652 -1.4 -2.8 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_961 -1.3 -10.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_1065 -1.3 -6.1 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_974 -1.3 -3.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1472 -1.3 -2.3 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_3707 -1.3 -6.0 Cobyrinic acid A,C-diamide synthase compare
Pf1N1B4_2858 -1.3 -8.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1469 -1.3 -10.8 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_1544 -1.3 -6.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1333 -1.3 -4.3 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf1N1B4_2884 -1.3 -5.0 Paraquat-inducible protein A compare
Pf1N1B4_5653 -1.3 -4.7 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_1262 -1.2 -6.1 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3081 -1.2 -11.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2009 -1.2 -4.8 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1611 -1.2 -5.5 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2114 -1.2 -6.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_1116 -1.2 -8.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_1327 -1.2 -7.1 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf1N1B4_3518 -1.2 -2.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2949 -1.2 -2.6 FIG00956396: hypothetical protein compare
Pf1N1B4_4882 -1.2 -5.0 Transcriptional regulator MexT compare
Pf1N1B4_3709 -1.1 -3.7 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_784 -1.1 -7.3 Transcriptional activator MetR compare
Pf1N1B4_2010 -1.1 -5.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1115 -1.1 -7.5 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_962 -1.1 -6.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_4729 -1.1 -2.9 Hemolysin-type calcium-binding region compare
Pf1N1B4_1326 -1.1 -4.2 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf1N1B4_1263 -1.1 -3.0 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_3647 -1.1 -7.3 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_960 -1.0 -7.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_2005 -1.0 -1.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_5051 -1.0 -2.1 Sensor protein DegS compare
Pf1N1B4_3152 -1.0 -3.7 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_1306 -1.0 -8.8 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
Pf1N1B4_2209 -1.0 -6.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3712 -1.0 -5.9 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf1N1B4_644 -1.0 -2.1 Cold shock protein CspC compare
Pf1N1B4_1569 -1.0 -7.0 Twin-arginine translocation protein TatC compare
Pf1N1B4_1331 -1.0 -3.1 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_2026 -1.0 -2.6 Transcriptional regulator compare
Pf1N1B4_3168 -0.9 -2.4 AmpG permease compare
Pf1N1B4_2011 -0.9 -4.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_5266 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_3591 -0.9 -6.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_4357 -0.9 -1.7 Putrescine utilization regulator compare
Pf1N1B4_3872 -0.9 -6.1 Putative analog of CcoH, COG3198 compare
Pf1N1B4_3538 -0.9 -1.9 Transcriptional regulator, AraC family compare
Pf1N1B4_5661 -0.9 -5.0 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_899 -0.9 -2.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_3091 -0.9 -2.8 Membrane-associated zinc metalloprotease compare
Pf1N1B4_3871 -0.9 -7.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_2102 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_4030 -0.9 -2.2 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_348 -0.9 -2.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2874 -0.9 -1.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2269 -0.8 -2.0 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_4299 -0.8 -2.6 sensor histidine kinase compare
Pf1N1B4_3692 -0.8 -2.0 Chaperone protein HtpG compare
Pf1N1B4_3197 -0.8 -4.4 OmpA family protein compare
Pf1N1B4_4612 -0.8 -2.1 FIG00954117: hypothetical protein compare
Pf1N1B4_2224 -0.8 -1.5 FIG00953390: hypothetical protein compare
Pf1N1B4_3006 -0.8 -3.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_4322 -0.8 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4857 -0.8 -3.1 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2283 -0.8 -1.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_2173 -0.8 -2.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_65 -0.8 -3.6 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_3927 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_2877 -0.8 -4.0 Glycosyltransferase compare
Pf1N1B4_2706 -0.8 -2.5 FIG00954871: hypothetical protein compare
Pf1N1B4_4870 -0.8 -1.9 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_1619 -0.8 -6.2 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_3965 -0.8 -2.0 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_3779 -0.8 -2.3 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_275 -0.8 -1.7 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_2225 -0.8 -5.9 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_1888 -0.8 -2.6 Glutamate-aspartate carrier protein compare
Pf1N1B4_1878 -0.7 -4.8 Cytochrome c4 compare
Pf1N1B4_1837 -0.7 -1.4 Osmotically inducible protein C compare
Pf1N1B4_76 -0.7 -2.3 ATP binding protein compare
Pf1N1B4_2035 -0.7 -2.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_2060 -0.7 -2.6 hypothetical protein compare
Pf1N1B4_1142 -0.7 -4.3 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB compare
Pf1N1B4_1536 -0.7 -5.2 DamX, an inner membrane protein involved in bile resistance compare
Pf1N1B4_1570 -0.7 -2.4 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_2401 -0.7 -1.2 Lipoprotein, putative compare
Pf1N1B4_2334 -0.7 -2.4 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_767 -0.7 -2.7 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_3870 -0.7 -6.3 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_4517 -0.7 -2.2 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_2872 -0.7 -5.5 FIG00955330: hypothetical protein compare
Pf1N1B4_2273 -0.7 -2.8 hypothetical protein compare
Pf1N1B4_5898 -0.7 -2.7 hypothetical protein compare
Pf1N1B4_5720 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_600 -0.7 -3.4 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_716 -0.7 -2.4 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_2526 -0.7 -5.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1504 -0.7 -1.8 Acyl carrier protein compare
Pf1N1B4_5508 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_2959 -0.7 -3.6 FIG067310: hypothetical protein compare
Pf1N1B4_2642 -0.7 -2.0 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_2791 -0.7 -1.9 Putative inner membrane protein (Fragment) compare
Pf1N1B4_2969 -0.7 -5.4 ATPase, AFG1 family compare
Pf1N1B4_2856 -0.7 -2.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_722 -0.7 -1.5 SAM-dependent methyltransferases compare
Pf1N1B4_349 -0.7 -2.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf1N1B4_4550 -0.7 -2.0 beta-ketoacyl synthase, putative compare
Pf1N1B4_339 -0.7 -1.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_29 -0.7 -1.9 FIG00967200: hypothetical protein compare
Pf1N1B4_3703 -0.7 -1.8 NLP/P60 family protein compare
Pf1N1B4_4063 -0.7 -2.5 CrcB protein compare
Pf1N1B4_2794 -0.7 -1.3 FIG00953595: hypothetical protein compare
Pf1N1B4_1827 -0.7 -2.7 FIG00953482: hypothetical protein compare
Pf1N1B4_718 -0.7 -3.5 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_2643 -0.7 -1.6 Predicted zinc-binding protein compare
Pf1N1B4_1153 -0.7 -1.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_4476 -0.6 -2.4 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas fluorescens FW300-N1B4

For nitrogen source L-Glutamic acid monopotassium salt monohydrate across organisms