Experiment set5IT046 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Gjerstad humics 0.5 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_300 -5.6 -3.9 CrcB protein compare
Pf6N2E2_5027 -5.2 -11.6 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_2258 -5.0 -8.3 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5006 -4.1 -9.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_760 -4.0 -13.3 Na+/H+ antiporter NhaB compare
Pf6N2E2_2574 -3.7 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_2274 -3.6 -5.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3661 -3.6 -2.5 hypothetical protein compare
Pf6N2E2_5320 -3.6 -9.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_5527 -3.5 -3.4 Cold shock protein CspC compare
Pf6N2E2_5318 -3.5 -20.3 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_3658 -3.5 -7.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3282 -3.4 -2.4 FIG005080: Possible exported protein compare
Pf6N2E2_5178 -3.4 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5150 -3.4 -6.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3612 -3.4 -2.3 HflK protein compare
Pf6N2E2_5321 -3.2 -10.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_3941 -3.2 -3.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5609 -3.1 -7.7 DNA-binding response regulator ColR compare
Pf6N2E2_4071 -3.1 -5.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4451 -3.1 -7.6 FIG139438: lipoprotein B compare
Pf6N2E2_4599 -3.1 -4.1 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5242 -3.1 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5068 -3.0 -13.0 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2507 -3.0 -6.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4416 -2.9 -2.8 Tyrosine recombinase XerC compare
Pf6N2E2_3257 -2.9 -2.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5155 -2.9 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5319 -2.9 -9.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_4369 -2.9 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2506 -2.8 -13.8 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_144 -2.8 -15.6 Uncharacterized protein YtfM precursor compare
Pf6N2E2_2261 -2.8 -5.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_2218 -2.8 -5.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2127 -2.7 -5.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_170 -2.7 -3.1 lipoprotein, putative compare
Pf6N2E2_3948 -2.7 -10.3 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4075 -2.6 -5.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3611 -2.6 -1.7 HflC protein compare
Pf6N2E2_3607 -2.5 -9.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5317 -2.5 -12.0 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_3258 -2.5 -4.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_156 -2.5 -2.0 Carbon storage regulator compare
Pf6N2E2_3460 -2.5 -2.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_70 -2.4 -4.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3060 -2.4 -2.6 Outer membrane protein H precursor compare
Pf6N2E2_4372 -2.4 -5.5 FIG00460773: hypothetical protein compare
Pf6N2E2_3260 -2.4 -5.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4153 -2.4 -1.6 Sensory box histidine kinase compare
Pf6N2E2_4803 -2.4 -2.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3659 -2.3 -5.7 Protein fixF compare
Pf6N2E2_3095 -2.3 -1.6 hypothetical protein compare
Pf6N2E2_3074 -2.3 -2.5 FIG00960973: hypothetical protein compare
Pf6N2E2_3791 -2.3 -9.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2440 -2.2 -2.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_2010 -2.2 -2.1 hypothetical protein compare
Pf6N2E2_4187 -2.2 -4.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5219 -2.2 -8.5 FIG140336: TPR domain protein compare
Pf6N2E2_5523 -2.2 -4.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_2508 -2.2 -3.8 hypothetical protein compare
Pf6N2E2_5069 -2.1 -3.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_145 -2.1 -6.6 putative exported protein compare
Pf6N2E2_3303 -2.1 -5.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5727 -2.1 -6.1 FIG00955360: hypothetical protein compare
Pf6N2E2_5316 -2.1 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3461 -2.1 -2.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5610 -2.0 -6.6 two-component system sensor protein compare
Pf6N2E2_5536 -2.0 -2.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4611 -2.0 -4.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5508 -2.0 -2.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2474 -1.9 -9.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1056 -1.9 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4352 -1.8 -3.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2480 -1.8 -2.0 FIG00957636: hypothetical protein compare
Pf6N2E2_4072 -1.8 -5.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3942 -1.8 -7.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2707 -1.7 -4.4 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_3833 -1.7 -4.9 hypothetical protein compare
Pf6N2E2_2219 -1.7 -2.0 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3264 -1.7 -3.4 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2472 -1.7 -3.8 hypothetical protein compare
Pf6N2E2_5780 -1.7 -7.8 Periplasmic protease compare
Pf6N2E2_178 -1.6 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_6063 -1.6 -6.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4160 -1.6 -1.3 Cytochrome c5 compare
Pf6N2E2_445 -1.6 -5.5 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_6058 -1.6 -4.9 FIG139976: hypothetical protein compare
Pf6N2E2_2217 -1.6 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2822 -1.6 -4.9 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2509 -1.6 -2.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5340 -1.6 -3.9 Stringent starvation protein A compare
Pf6N2E2_5111 -1.6 -3.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3373 -1.5 -3.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5766 -1.5 -1.1 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_2514 -1.5 -4.5 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3283 -1.5 -4.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_2510 -1.5 -3.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4204 -1.5 -1.7 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5647 -1.4 -4.8 Transcriptional regulator, TetR family compare
Pf6N2E2_3792 -1.4 -4.3 Glucans biosynthesis protein G precursor compare
Pf6N2E2_4095 -1.4 -7.7 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_2753 -1.3 -2.4 HtrA protease/chaperone protein compare
Pf6N2E2_2752 -1.3 -6.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2425 -1.3 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3516 -1.3 -2.5 Probable transmembrane protein compare
Pf6N2E2_4556 -1.3 -3.0 FIG00953078: hypothetical protein compare
Pf6N2E2_2473 -1.3 -1.5 Major outer membrane lipoprotein I compare
Pf6N2E2_5342 -1.3 -2.8 21 kDa hemolysin precursor compare
Pf6N2E2_5156 -1.3 -1.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5567 -1.3 -2.4 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_2967 -1.3 -1.8 Cold shock protein CspA compare
Pf6N2E2_3847 -1.3 -2.4 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3908 -1.3 -4.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5331 -1.3 -5.2 ATPase, AFG1 family compare
Pf6N2E2_5824 -1.2 -6.7 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf6N2E2_1034 -1.2 -1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4077 -1.2 -1.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2264 -1.2 -2.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1223 -1.2 -2.9 Amino acid transporters compare
Pf6N2E2_5392 -1.2 -2.8 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_2513 -1.2 -3.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5746 -1.2 -2.6 Cobalamin synthase compare
Pf6N2E2_4447 -1.2 -9.0 Cytochrome c family protein compare
Pf6N2E2_4276 -1.2 -3.9 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4889 -1.2 -3.6 Putative transport protein compare
Pf6N2E2_1403 -1.2 -2.7 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_4148 -1.2 -4.5 Glutamate-aspartate carrier protein compare
Pf6N2E2_5014 -1.1 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4365 -1.1 -5.0 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_4084 -1.1 -3.7 Transcriptional regulator compare
Pf6N2E2_3885 -1.1 -1.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_248 -1.1 -5.8 hypothetical protein compare
Pf6N2E2_945 -1.1 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_4045 -1.1 -3.3 FIG00953248: hypothetical protein compare
Pf6N2E2_3664 -1.1 -5.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_6064 -1.1 -4.1 2-methylaconitate isomerase compare
Pf6N2E2_664 -1.1 -1.6 Acetoin catabolism protein X compare
Pf6N2E2_4591 -1.1 -3.7 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_2471 -1.1 -5.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3179 -1.1 -1.8 FIG021952: putative membrane protein compare
Pf6N2E2_2340 -1.1 -2.9 Transcriptional regulator, GntR family compare
Pf6N2E2_600 -1.1 -2.3 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_4052 -1.1 -1.1 FIG00955481: hypothetical protein compare
Pf6N2E2_2282 -1.0 -2.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_3199 -1.0 -4.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_4046 -1.0 -7.7 FIG00953482: hypothetical protein compare
Pf6N2E2_3807 -1.0 -2.6 Histidine utilization repressor compare
Pf6N2E2_3328 -1.0 -1.6 transcriptional regulator compare
Pf6N2E2_819 -1.0 -2.3 Response regulator compare
Pf6N2E2_338 -1.0 -1.0 Transcriptional regulator, AraC family compare
Pf6N2E2_4205 -1.0 -2.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_384 -1.0 -2.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2080 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_2825 -1.0 -2.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4691 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_1797 -1.0 -1.3 Transcriptional regulator compare
Pf6N2E2_5181 -1.0 -5.5 Paraquat-inducible protein A compare
Pf6N2E2_2487 -1.0 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_2106 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_238 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_1699 -1.0 -2.1 FIG00955832: hypothetical protein compare
Pf6N2E2_1534 -1.0 -1.7 Probable transmembrane protein compare
Pf6N2E2_2447 -1.0 -4.0 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3834 -1.0 -3.2 Lipoprotein NlpD compare
Pf6N2E2_1279 -1.0 -2.4 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_3835 -0.9 -1.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2675 -0.9 -1.0 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3665 -0.9 -0.8 serine/threonine protein kinase compare
Pf6N2E2_2413 -0.9 -1.4 FIG074102: hypothetical protein compare
Pf6N2E2_3870 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_3243 -0.9 -6.8 FIG067310: hypothetical protein compare
Pf6N2E2_3206 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_2755 -0.9 -1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5677 -0.9 -1.0 Carbon storage regulator compare
Pf6N2E2_5845 -0.9 -3.8 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_5394 -0.9 -2.2 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_5906 -0.9 -2.2 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_4453 -0.9 -6.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_902 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_1450 -0.9 -1.4 FIG00960438: hypothetical protein compare
Pf6N2E2_833 -0.9 -2.4 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_5739 -0.9 -0.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2423 -0.9 -4.2 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_1617 -0.9 -0.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2081 -0.9 -1.2 putative exported protein compare
Pf6N2E2_2572 -0.9 -1.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5730 -0.9 -1.3 FIG00954480: hypothetical protein compare
Pf6N2E2_841 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_482 -0.9 -1.3 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_3770 -0.9 -1.1 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_828 -0.9 -2.8 Transcriptional regulator, TetR family compare
Pf6N2E2_3666 -0.9 -2.0 InaA protein compare
Pf6N2E2_2181 -0.9 -0.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2253 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_660 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_3505 -0.8 -1.2 Translation initiation factor SUI1-related protein compare
Pf6N2E2_6057 -0.8 -1.6 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_1776 -0.8 -1.1 Chemotaxis protein CheD compare
Pf6N2E2_2962 -0.8 -1.7 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_5576 -0.8 -2.7 Cys-tRNA(Pro) deacylase YbaK compare


Specific Phenotypes

For 3 genes in this experiment

For stress Gjerstad humics in Pseudomonas fluorescens FW300-N2E2

For stress Gjerstad humics across organisms