Experiment set5IT046 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Lysine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.8 -5.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5665 -4.8 -7.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2547 -4.5 -3.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1307 -4.2 -4.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1624 -4.1 -9.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_5666 -4.0 -5.4 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_15 -3.9 -5.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2880 -3.9 -15.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2545 -3.7 -16.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2505 -3.7 -11.1 Lysine 2-monooxygenase (EC 1.13.12.2) (from data) conserved
Pf1N1B4_4678 -3.7 -7.7 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_2272 -3.6 -5.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1565 -3.5 -5.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1408 -3.5 -4.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2549 -3.4 -10.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2338 -3.4 -11.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_12 -3.3 -9.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1831 -3.3 -13.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_3833 -3.3 -12.8 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2303 -3.2 -15.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2548 -3.2 -7.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2112 -3.2 -16.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2384 -3.1 -12.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1626 -3.1 -9.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1434 -3.0 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_58 -3.0 -9.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_350 -2.9 -8.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_4065 -2.8 -8.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1830 -2.8 -10.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1534 -2.8 -19.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1315 -2.8 -8.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_847 -2.7 -8.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1067 -2.7 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1627 -2.6 -6.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2506 -2.6 -5.5 Transcriptional regulator, AsnC family conserved
Pf1N1B4_2879 -2.5 -8.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2878 -2.5 -10.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2487 -2.5 -9.6 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1533 -2.5 -12.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2504 -2.5 -8.9 5-aminopentanamidase (EC 3.5.1.30) (from data) conserved
Pf1N1B4_1653 -2.4 -8.1 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_2337 -2.4 -5.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1625 -2.4 -4.5 FIG00956267: hypothetical protein compare
Pf1N1B4_2486 -2.4 -2.9 hypothetical protein compare
Pf1N1B4_2282 -2.4 -10.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3168 -2.3 -4.2 AmpG permease compare
Pf1N1B4_578 -2.3 -4.7 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3812 -2.2 -10.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2377 -2.2 -7.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1906 -2.2 -5.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1544 -2.1 -9.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1619 -2.0 -12.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2488 -2.0 -8.7 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_3178 -1.8 -6.1 Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) conserved
Pf1N1B4_3518 -1.7 -2.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2917 -1.7 -10.0 FIG140336: TPR domain protein compare
Pf1N1B4_3506 -1.7 -7.2 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1180 -1.6 -3.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_2261 -1.6 -8.0 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_2262 -1.6 -9.8 Lysine ABC transporter, permease component (from data) conserved
Pf1N1B4_1617 -1.6 -7.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2858 -1.6 -9.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3697 -1.5 -6.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_4040 -1.5 -3.4 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2259 -1.5 -7.3 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) conserved
Pf1N1B4_2284 -1.5 -5.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2280 -1.5 -8.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_600 -1.5 -5.4 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_2263 -1.4 -4.5 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf1N1B4_3177 -1.4 -8.8 Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) conserved
Pf1N1B4_762 -1.4 -5.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3468 -1.4 -2.9 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2283 -1.4 -2.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1317 -1.4 -3.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_27 -1.3 -3.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_188 -1.3 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2886 -1.3 -9.1 Paraquat-inducible protein B compare
Pf1N1B4_1566 -1.3 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2695 -1.3 -2.8 Rare lipoprotein A precursor compare
Pf1N1B4_327 -1.3 -1.8 hypothetical protein compare
Pf1N1B4_3111 -1.3 -2.3 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_3179 -1.3 -5.0 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_1733 -1.2 -7.2 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) compare
Pf1N1B4_2010 -1.2 -5.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2885 -1.2 -4.6 Paraquat-inducible protein A compare
Pf1N1B4_3779 -1.2 -3.3 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_3222 -1.2 -2.4 Ferredoxin compare
Pf1N1B4_3176 -1.2 -3.5 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_4299 -1.1 -2.7 sensor histidine kinase compare
Pf1N1B4_2009 -1.1 -4.5 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2322 -1.1 -2.1 FIG015547: peptidase, M16 family compare
Pf1N1B4_1262 -1.1 -5.5 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1668 -1.1 -4.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2490 -1.1 -4.9 Biotin synthesis protein BioC compare
Pf1N1B4_2884 -1.1 -3.9 Paraquat-inducible protein A compare
Pf1N1B4_4029 -1.1 -3.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2706 -1.1 -3.2 FIG00954871: hypothetical protein compare
Pf1N1B4_407 -1.1 -2.7 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_1568 -1.1 -2.7 Twin-arginine translocation protein TatB compare
Pf1N1B4_1057 -1.1 -3.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_961 -1.1 -8.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_688 -1.1 -2.6 FIG00955483: hypothetical protein compare
Pf1N1B4_359 -1.1 -2.6 GGDEF domain protein compare
Pf1N1B4_2959 -1.0 -4.1 FIG067310: hypothetical protein compare
Pf1N1B4_3305 -1.0 -2.3 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_652 -1.0 -6.3 Sensory box histidine kinase compare
Pf1N1B4_3871 -1.0 -8.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_2011 -1.0 -5.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_1350 -1.0 -2.3 GCN5-related N-acetyltransferase compare
Pf1N1B4_2491 -1.0 -3.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2850 -1.0 -5.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_3870 -1.0 -8.4 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_2791 -0.9 -2.5 Putative inner membrane protein (Fragment) compare
Pf1N1B4_2859 -0.9 -7.2 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3879 -0.9 -7.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf1N1B4_1236 -0.9 -4.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2856 -0.9 -3.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_4028 -0.9 -2.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3647 -0.9 -7.1 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_4957 -0.9 -2.1 Transcriptional regulator, TetR family compare
Pf1N1B4_3878 -0.9 -5.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf1N1B4_2874 -0.9 -1.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_236 -0.9 -2.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_525 -0.9 -2.8 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_974 -0.9 -2.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_4253 -0.9 -2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3093 -0.9 -1.3 Outer membrane protein H precursor compare
Pf1N1B4_3591 -0.8 -6.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_3325 -0.8 -2.0 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_1569 -0.8 -6.4 Twin-arginine translocation protein TatC compare
Pf1N1B4_3091 -0.8 -2.5 Membrane-associated zinc metalloprotease compare
Pf1N1B4_4568 -0.8 -1.7 FIG00793915: hypothetical protein compare
Pf1N1B4_3855 -0.8 -2.6 Chromosome partition protein smc compare
Pf1N1B4_1936 -0.8 -3.6 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_1113 -0.8 -3.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_710 -0.8 -2.3 Transporter, LysE family compare
Pf1N1B4_4275 -0.8 -3.1 Inosose dehydratase (EC 4.2.1.44) compare
Pf1N1B4_962 -0.8 -5.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_3524 -0.8 -2.9 FIG00955363: hypothetical protein compare
Pf1N1B4_709 -0.8 -2.9 FIG00953860: hypothetical protein compare
Pf1N1B4_3783 -0.8 -2.8 FIG00958237: hypothetical protein compare
Pf1N1B4_960 -0.8 -5.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_3872 -0.8 -5.7 Putative analog of CcoH, COG3198 compare
Pf1N1B4_3241 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_1462 -0.8 -5.8 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3143 -0.8 -2.4 RecA protein compare
Pf1N1B4_3553 -0.8 -4.0 Segregation and condensation protein A compare
Pf1N1B4_1756 -0.8 -2.6 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_1234 -0.8 -2.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3751 -0.8 -1.9 FIG00953060: hypothetical protein compare
Pf1N1B4_2526 -0.8 -6.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_108 -0.8 -2.0 FIG00954456: hypothetical protein compare
Pf1N1B4_4636 -0.8 -2.2 TPR domain protein in aerotolerance operon compare
Pf1N1B4_723 -0.7 -5.5 two-component system sensor protein compare
Pf1N1B4_2035 -0.7 -3.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_1590 -0.7 -3.5 Histidine utilization repressor compare
Pf1N1B4_2256 -0.7 -4.3 glutamine synthetase family protein compare
Pf1N1B4_3627 -0.7 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_3011 -0.7 -1.7 Tyrosine recombinase XerD compare
Pf1N1B4_4765 -0.7 -2.0 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_1750 -0.7 -1.7 Death on curing protein, Doc toxin compare
Pf1N1B4_275 -0.7 -1.6 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_5560 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_4030 -0.7 -1.7 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_106 -0.7 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1882 -0.7 -6.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf1N1B4_2004 -0.7 -1.5 putative membrane protein compare
Pf1N1B4_1816 -0.7 -4.3 Glutaryl-CoA dehydrogenase (EC 1.3.99.7) compare
Pf1N1B4_2537 -0.7 -2.6 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf1N1B4_3281 -0.7 -2.3 AidA compare
Pf1N1B4_3880 -0.7 -5.2 hypothetical protein compare
Pf1N1B4_1474 -0.7 -3.0 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf1N1B4_1465 -0.7 -5.7 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_4038 -0.7 -1.4 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2894 -0.7 -2.3 FIG00956317: hypothetical protein compare
Pf1N1B4_5348 -0.7 -2.6 hypothetical protein compare
Pf1N1B4_2224 -0.7 -1.7 FIG00953390: hypothetical protein compare
Pf1N1B4_644 -0.7 -1.7 Cold shock protein CspC compare
Pf1N1B4_4166 -0.7 -2.1 Transcriptional regulator, LysR family compare
Pf1N1B4_4301 -0.7 -2.5 hypothetical protein compare
Pf1N1B4_866 -0.6 -1.2 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_1365 -0.6 -2.0 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_3876 -0.6 -4.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf1N1B4_1652 -0.6 -3.9 transcriptional regulator, LysR family compare
Pf1N1B4_2949 -0.6 -1.1 FIG00956396: hypothetical protein compare
Pf1N1B4_3541 -0.6 -2.1 FIG027190: Putative transmembrane protein compare
Pf1N1B4_1878 -0.6 -4.0 Cytochrome c4 compare
Pf1N1B4_4274 -0.6 -2.1 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain compare
Pf1N1B4_3730 -0.6 -2.0 Sodium-dependent transporter compare
Pf1N1B4_2005 -0.6 -1.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1642 -0.6 -3.9 Arginine ABC transporter, permease protein ArtQ compare
Pf1N1B4_291 -0.6 -4.2 Major outer membrane lipoprotein I compare
Pf1N1B4_1641 -0.6 -4.5 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_3590 -0.6 -4.4 hypothetical protein compare
Pf1N1B4_2891 -0.6 -1.8 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_539 -0.6 -1.3 Transcriptional regulators compare
Pf1N1B4_678 -0.6 -3.6 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_4458 -0.6 -2.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_767 -0.6 -2.5 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_2208 -0.6 -3.2 Polyphosphate kinase (EC 2.7.4.1) compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source L-Lysine in Pseudomonas fluorescens FW300-N1B4

For nitrogen source L-Lysine across organisms