Experiment set5IT046 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Cefmetazole 0.009 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS17640 +3.2 9.0 DNA-directed RNA polymerase subunit omega compare
BBR_RS12550 +2.9 25.1 sugar transferase compare
BBR_RS12620 +2.6 19.0 glycosyltransferase family 1 protein compare
BBR_RS11500 +2.0 17.1 glycosyltransferase family 2 protein compare
BBR_RS12905 +1.6 3.6 galactose-1-phosphate uridylyltransferase compare
BBR_RS16430 +1.6 3.9 nucleotide pyrophosphatase compare
BBR_RS12310 +1.5 3.3 signal recognition particle protein compare
BBR_RS10720 +1.3 11.5 PDZ domain-containing protein compare
BBR_RS12375 +1.2 1.5 pantetheine-phosphate adenylyltransferase compare
BBR_RS19435 +1.1 2.3 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS15670 +1.1 3.5 adenine phosphoribosyltransferase compare
BBR_RS16670 +1.1 5.0 hypothetical protein compare
BBR_RS10740 +1.1 2.5 tRNA-Gly compare
BBR_RS12365 +1.0 5.5 DUF177 domain-containing protein compare
BBR_RS20885 +1.0 1.2 hypothetical protein compare
BBR_RS16555 +1.0 1.1 DNA translocase FtsK compare
BBR_RS15695 +0.9 4.2 membrane channel protein compare
BBR_RS18215 +0.9 4.0 AI-2E family transporter compare
BBR_RS13910 +0.9 0.9 arginine repressor compare
BBR_RS11210 +0.9 7.4 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS16535 +0.9 1.6 DUF3046 domain-containing protein compare
BBR_RS11205 +0.9 3.7 HPr family phosphocarrier protein compare
BBR_RS18700 +0.9 6.7 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS12600 +0.9 4.1 serine acetyltransferase compare
BBR_RS19055 +0.8 1.4 ferredoxin family protein compare
BBR_RS15785 +0.8 1.7 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS15130 +0.8 2.2 metal-sulfur cluster assembly factor compare
BBR_RS16835 +0.8 2.3 cell wall biosynthesis-associated protein compare
BBR_RS16605 +0.8 5.5 hypothetical protein compare
BBR_RS13215 +0.8 1.0 hypothetical protein compare
BBR_RS21060 +0.8 3.4 hypothetical protein compare
BBR_RS20775 +0.8 1.5 DUF4230 domain-containing protein compare
BBR_RS14275 +0.8 1.2 30S ribosomal protein S1 compare
BBR_RS12880 +0.7 4.0 Crp/Fnr family transcriptional regulator compare
BBR_RS18575 +0.7 2.0 hypothetical protein compare
BBR_RS18695 +0.7 3.4 PRD domain-containing protein compare
BBR_RS17905 +0.7 7.0 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS15520 +0.7 1.8 shikimate 5-dehydrogenase compare
BBR_RS21170 +0.7 3.9 membrane protein insertion efficiency factor YidD compare
BBR_RS14370 +0.7 2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS16195 +0.7 1.4 hypothetical protein compare
BBR_RS21015 +0.6 2.1 hypothetical protein compare
BBR_RS14070 +0.6 2.9 threonine synthase compare
BBR_RS15390 +0.6 2.8 phospholipase compare
BBR_RS17680 +0.6 1.9 hypothetical protein compare
BBR_RS15855 +0.6 2.3 N-acetyltransferase compare
BBR_RS19350 +0.6 1.4 tRNA-Val compare
BBR_RS14220 +0.6 2.9 phosphomannomutase compare
BBR_RS13840 +0.6 3.2 DUF3043 domain-containing protein compare
BBR_RS19095 +0.6 4.3 magnesium transporter compare
BBR_RS13505 +0.6 2.3 DUF4391 domain-containing protein compare
BBR_RS20420 +0.6 3.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS10735 +0.6 4.3 zinc metalloprotease HtpX compare
BBR_RS18035 +0.6 1.2 oligoribonuclease compare
BBR_RS12925 +0.6 2.2 hypothetical protein compare
BBR_RS19640 +0.5 0.5 phosphoesterase compare
BBR_RS16080 +0.5 1.8 DUF1287 domain-containing protein compare
BBR_RS11510 +0.5 1.5 signal recognition particle-docking protein FtsY compare
BBR_RS16035 +0.5 1.6 hypothetical protein compare
BBR_RS21025 +0.5 2.1 hypothetical protein compare
BBR_RS20855 +0.5 1.6 hypothetical protein compare
BBR_RS13125 +0.5 0.7 ABC transporter permease compare
BBR_RS15450 +0.5 1.5 dihydroorotate dehydrogenase compare
BBR_RS14365 +0.5 2.3 hypothetical protein compare
BBR_RS19115 +0.5 1.8 hypothetical protein compare
BBR_RS14290 +0.5 1.7 TerC family protein compare
BBR_RS11360 +0.5 2.2 restriction endonuclease compare
BBR_RS15665 +0.5 0.9 preprotein translocase subunit YajC compare
BBR_RS20085 +0.5 2.9 histidine phosphatase family protein compare
BBR_RS14130 +0.4 0.7 septum formation initiator family protein compare
BBR_RS15015 +0.4 1.6 cytidine deaminase compare
BBR_RS14400 +0.4 3.3 acetyltransferase compare
BBR_RS19440 +0.4 3.4 polysaccharide deacetylase family protein compare
BBR_RS15935 +0.4 1.8 hypothetical protein compare
BBR_RS12030 +0.4 1.8 F0F1 ATP synthase subunit epsilon compare
BBR_RS15355 +0.4 1.6 DUF3800 domain-containing protein compare
BBR_RS20960 +0.4 0.7 hypothetical protein compare
BBR_RS20955 +0.4 0.8 hypothetical protein compare
BBR_RS15090 +0.4 0.6 type II 3-dehydroquinate dehydratase compare
BBR_RS20930 +0.4 1.0 hypothetical protein compare
BBR_RS12355 +0.4 0.9 ribonuclease III compare
BBR_RS12715 +0.4 1.8 helix-turn-helix domain-containing protein compare
BBR_RS16695 +0.4 1.5 PadR family transcriptional regulator compare
BBR_RS13905 +0.4 1.5 ornithine carbamoyltransferase compare
BBR_RS17110 +0.4 2.4 oleate hydratase compare
BBR_RS15455 +0.4 0.5 orotate phosphoribosyltransferase compare
BBR_RS15755 +0.4 0.6 hypothetical protein compare
BBR_RS12840 +0.4 2.3 DUF4916 domain-containing protein compare
BBR_RS12305 +0.4 2.0 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS15445 +0.4 1.7 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS15375 +0.4 1.3 phosphoesterase compare
BBR_RS15550 +0.4 1.3 L-lactate dehydrogenase compare
BBR_RS20810 +0.4 0.5 pirin compare
BBR_RS14105 +0.4 2.1 N-acetyltransferase compare
BBR_RS19345 +0.4 1.9 tRNA-Val compare
BBR_RS15055 +0.4 0.8 hypothetical protein compare
BBR_RS17755 +0.4 1.6 D-ribose pyranase compare
BBR_RS12575 +0.4 1.5 hypothetical protein compare
BBR_RS12910 +0.4 3.1 galactokinase compare
BBR_RS15160 +0.4 1.8 PhoH family protein compare
BBR_RS20865 +0.3 1.0 glycogen phosphorylase compare
BBR_RS16955 +0.3 0.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS10980 +0.3 2.4 TetR/AcrR family transcriptional regulator compare
BBR_RS15020 +0.3 0.5 membrane protein compare
BBR_RS13355 +0.3 1.9 ABC transporter substrate-binding protein compare
BBR_RS12210 +0.3 1.9 hypothetical protein compare
BBR_RS11470 +0.3 0.3 6-phosphogluconolactonase compare
BBR_RS13435 +0.3 2.2 hypothetical protein compare
BBR_RS14945 +0.3 1.6 peptidase E compare
BBR_RS17415 +0.3 0.7 hypothetical protein compare
BBR_RS15675 +0.3 1.5 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS18545 +0.3 1.4 peroxiredoxin compare
BBR_RS14315 +0.3 1.7 DNA polymerase I compare
BBR_RS16540 +0.3 1.6 XRE family transcriptional regulator compare
BBR_RS10890 +0.3 2.3 LacI family transcriptional regulator compare
BBR_RS13625 +0.3 0.8 transcription antitermination factor NusB compare
BBR_RS18495 +0.3 2.0 ROK family protein compare
BBR_RS17030 +0.3 1.1 bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase PriA compare
BBR_RS20785 +0.3 0.3 PadR family transcriptional regulator compare
BBR_RS17120 +0.3 1.4 DUF4186 domain-containing protein compare
BBR_RS13535 +0.3 1.2 MerR family DNA-binding transcriptional regulator compare
BBR_RS15750 +0.3 0.4 hypothetical protein compare
BBR_RS12340 +0.3 1.1 Arc family DNA-binding protein compare
BBR_RS13430 +0.3 1.6 hypothetical protein compare
BBR_RS17465 +0.3 1.3 WXG100 family type VII secretion target compare
BBR_RS13985 +0.3 1.3 membrane protein compare
BBR_RS15685 +0.3 2.0 hypothetical protein compare
BBR_RS16870 +0.3 1.4 ROK family protein compare
BBR_RS13580 +0.3 1.0 nodulation protein L compare
BBR_RS16780 +0.3 1.1 hypothetical protein compare
BBR_RS13980 +0.3 1.7 HD domain-containing protein compare
BBR_RS12120 +0.3 2.2 aspartate ammonia-lyase compare
BBR_RS20685 +0.3 0.9 hypothetical protein compare
BBR_RS13235 +0.3 1.0 hypothetical protein compare
BBR_RS15360 +0.3 0.9 hypothetical protein compare
BBR_RS18420 +0.3 1.7 hypothetical protein compare
BBR_RS13630 +0.3 1.2 carbamoyl-phosphate synthase small subunit compare
BBR_RS10725 +0.3 2.6 Lead, cadmium, zinc and mercury transporting ATPase compare
BBR_RS10915 +0.3 1.1 MerR family DNA-binding transcriptional regulator compare
BBR_RS13255 +0.3 1.0 hypothetical protein compare
BBR_RS17015 +0.3 1.9 MFS transporter compare
BBR_RS18315 +0.3 0.9 hypothetical protein compare
BBR_RS16805 +0.3 1.8 aldose 1-epimerase compare
BBR_RS11295 +0.3 1.4 transcriptional regulator compare
BBR_RS20430 +0.3 0.5 hypothetical protein compare
BBR_RS18470 +0.3 1.9 MFS transporter compare
BBR_RS15280 +0.3 1.3 hypothetical protein compare
BBR_RS16820 +0.3 0.9 RNA polymerase sigma factor RpoE compare
BBR_RS20745 +0.3 0.7 hypothetical protein compare
BBR_RS17655 +0.3 1.5 transposase compare
BBR_RS16580 +0.3 1.3 EamA/RhaT family transporter compare
BBR_RS20590 +0.3 1.7 IS30 family transposase compare
BBR_RS15000 +0.3 1.2 ABC transporter ATP-binding protein compare
BBR_RS17315 +0.3 1.7 MFS transporter compare
BBR_RS15490 +0.3 1.0 short-chain dehydrogenase compare
BBR_RS12335 +0.3 1.1 PIN domain-containing protein compare
BBR_RS13390 +0.3 1.0 hypothetical protein compare
BBR_RS13590 +0.3 1.2 hypothetical protein compare
BBR_RS20805 +0.3 1.2 hypothetical protein compare
BBR_RS15460 +0.3 0.6 hypothetical protein compare
BBR_RS14325 +0.3 1.3 NUDIX hydrolase compare
BBR_RS15680 +0.3 1.3 succinate--CoA ligase subunit alpha compare
BBR_RS13460 +0.3 1.8 aminotransferase compare
BBR_RS16295 +0.3 1.0 DNA methyltransferase compare
BBR_RS16445 +0.3 1.3 hypothetical protein compare
BBR_RS14015 +0.2 0.9 hypothetical protein compare
BBR_RS12455 +0.2 1.8 ribonuclease HII compare
BBR_RS14380 +0.2 1.8 phosphate acetyltransferase compare
BBR_RS14660 +0.2 0.7 transcriptional regulator compare
BBR_RS20510 +0.2 1.5 Conserved hypothetical protein, phage protein compare
BBR_RS20070 +0.2 1.8 sugar ABC transporter permease compare
BBR_RS13635 +0.2 1.3 carbamoyl-phosphate synthase large subunit compare
BBR_RS16510 +0.2 1.7 anthranilate phosphoribosyltransferase compare
BBR_RS18485 +0.2 0.8 IS30 family transposase compare
BBR_RS12645 +0.2 1.2 acyltransferase compare
BBR_RS14445 +0.2 1.4 Solute-binding protein of ABC transporter system compare
BBR_RS13640 +0.2 1.0 orotidine-5'-phosphate decarboxylase compare
BBR_RS20780 +0.2 0.8 hypothetical protein compare
BBR_RS12300 +0.2 0.8 30S ribosomal protein S16 compare
BBR_RS13465 +0.2 1.5 glycosyl transferase compare
BBR_RS16720 +0.2 1.5 nicotinate-nucleotide diphosphorylase (carboxylating) compare
BBR_RS16165 +0.2 1.2 M23 family peptidase compare
BBR_RS13575 +0.2 1.1 sugar O-acetyltransferase compare
BBR_RS12995 +0.2 1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS16890 +0.2 1.0 glucose/galactose transporter compare
BBR_RS20125 +0.2 1.7 SIR2 family protein compare
BBR_RS12515 +0.2 1.5 LacI family transcriptional regulator compare
BBR_RS15230 +0.2 0.6 elongation factor 4 compare
BBR_RS18435 +0.2 1.1 plasmid mobilization relaxosome protein MobC compare
BBR_RS19955 +0.2 1.5 hypothetical protein compare
BBR_RS15385 +0.2 0.9 hypothetical protein compare
BBR_RS14815 +0.2 1.0 D-hexose-6-phosphate mutarotase compare
BBR_RS14570 +0.2 1.2 ATP-binding protein compare
BBR_RS16015 +0.2 0.7 DUF2089 domain-containing protein compare
BBR_RS18610 +0.2 1.3 MFS transporter compare
BBR_RS18955 +0.2 1.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS15965 +0.2 1.1 transporter, drug/metabolite exporter family compare
BBR_RS15415 +0.2 0.9 choloylglycine hydrolase compare
BBR_RS11505 +0.2 1.7 TetR/AcrR family transcriptional regulator compare
BBR_RS14425 +0.2 1.0 histidine phosphatase family protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Cefmetazole across organisms