Experiment set5IT044 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium pyrophosphate dibasic 0.0025 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5069 -4.8 -6.5 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4206 -4.7 -3.2 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5703 -4.5 -5.3 outer membrane protein H1 compare
Pf6N2E2_5014 -4.2 -1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3271 -4.2 -2.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5527 -4.1 -2.8 Cold shock protein CspC compare
Pf6N2E2_2022 -4.0 -7.1 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5523 -3.6 -6.0 Small-conductance mechanosensitive channel compare
Pf6N2E2_2574 -3.6 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_5150 -3.6 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5242 -3.6 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3835 -3.5 -5.2 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_144 -3.4 -18.3 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3252 -3.4 -7.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2507 -3.3 -7.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3612 -3.3 -2.3 HflK protein compare
Pf6N2E2_3661 -3.2 -3.8 hypothetical protein compare
Pf6N2E2_5068 -3.2 -13.3 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3659 -3.2 -5.7 Protein fixF compare
Pf6N2E2_3607 -3.2 -10.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3782 -3.2 -4.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3942 -3.1 -9.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5705 -3.1 -3.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5720 -3.1 -11.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2261 -2.9 -5.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_5178 -2.9 -2.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2219 -2.9 -2.7 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5704 -2.9 -5.4 Transcriptional regulatory protein PhoP compare
Pf6N2E2_3257 -2.9 -2.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2217 -2.8 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4369 -2.8 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3908 -2.8 -6.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5006 -2.8 -8.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3260 -2.8 -4.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2218 -2.8 -4.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2973 -2.8 -4.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4077 -2.8 -2.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3258 -2.8 -3.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2127 -2.8 -4.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3658 -2.7 -6.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4372 -2.7 -5.5 FIG00460773: hypothetical protein compare
Pf6N2E2_2474 -2.7 -10.4 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3941 -2.7 -3.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5406 -2.7 -3.1 FIG00958224: hypothetical protein compare
Pf6N2E2_5219 -2.6 -8.5 FIG140336: TPR domain protein compare
Pf6N2E2_5986 -2.6 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_70 -2.5 -4.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3611 -2.5 -1.7 HflC protein compare
Pf6N2E2_3833 -2.5 -4.6 hypothetical protein compare
Pf6N2E2_2282 -2.5 -4.0 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5723 -2.5 -11.0 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_145 -2.5 -6.1 putative exported protein compare
Pf6N2E2_3847 -2.5 -4.1 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3770 -2.5 -2.9 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3617 -2.5 -5.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_6064 -2.4 -6.2 2-methylaconitate isomerase compare
Pf6N2E2_3610 -2.4 -4.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3460 -2.4 -2.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_424 -2.4 -6.9 Decarboxylase family protein compare
Pf6N2E2_3303 -2.3 -4.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3672 -2.3 -10.5 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_2126 -2.3 -6.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_4453 -2.3 -12.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2506 -2.3 -11.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4204 -2.2 -2.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5671 -2.1 -3.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3351 -2.1 -5.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3842 -2.1 -4.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3666 -2.1 -2.8 InaA protein compare
Pf6N2E2_3587 -2.1 -4.8 Azurin compare
Pf6N2E2_2753 -2.0 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_2278 -2.0 -12.2 Transcription-repair coupling factor compare
Pf6N2E2_2586 -2.0 -2.4 Hpt domain protein compare
Pf6N2E2_3461 -2.0 -2.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2323 -2.0 -3.6 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_3876 -1.9 -4.5 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_6063 -1.9 -7.2 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4414 -1.9 -3.3 FIG00953808: hypothetical protein compare
Pf6N2E2_3270 -1.9 -4.4 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1981 -1.9 -3.7 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5950 -1.9 -3.4 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_5291 -1.8 -12.5 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_4601 -1.8 -2.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3282 -1.8 -2.4 FIG005080: Possible exported protein compare
Pf6N2E2_2264 -1.8 -3.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3839 -1.8 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3072 -1.8 -8.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4599 -1.8 -3.5 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_1089 -1.8 -2.8 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_2752 -1.8 -7.4 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_6140 -1.8 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3283 -1.7 -4.4 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_2471 -1.7 -5.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4612 -1.7 -3.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5430 -1.7 -6.8 Transglycosylase, Slt family compare
Pf6N2E2_600 -1.7 -3.2 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_959 -1.7 -3.7 putative membrane protein compare
Pf6N2E2_3199 -1.7 -5.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_4422 -1.6 -2.9 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_1032 -1.6 -1.4 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3328 -1.6 -2.1 transcriptional regulator compare
Pf6N2E2_3255 -1.6 -3.1 YrbA protein compare
Pf6N2E2_2080 -1.6 -1.8 hypothetical protein compare
Pf6N2E2_4041 -1.6 -10.2 Acetyl-CoA hydrolase (EC 3.1.2.1) compare
Pf6N2E2_1636 -1.6 -7.2 Ferrichrome-iron receptor compare
Pf6N2E2_2480 -1.6 -1.5 FIG00957636: hypothetical protein compare
Pf6N2E2_4416 -1.6 -2.0 Tyrosine recombinase XerC compare
Pf6N2E2_2508 -1.6 -3.1 hypothetical protein compare
Pf6N2E2_5780 -1.6 -7.4 Periplasmic protease compare
Pf6N2E2_2324 -1.5 -1.8 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4928 -1.5 -1.9 Permeases of the major facilitator superfamily compare
Pf6N2E2_5052 -1.5 -2.3 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_2636 -1.5 -3.1 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3834 -1.5 -4.0 Lipoprotein NlpD compare
Pf6N2E2_5001 -1.5 -1.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4353 -1.5 -4.3 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5754 -1.5 -7.6 Long-chain fatty acid transport protein compare
Pf6N2E2_2472 -1.5 -1.7 hypothetical protein compare
Pf6N2E2_1173 -1.5 -1.8 hypothetical protein compare
Pf6N2E2_339 -1.5 -2.1 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_1043 -1.4 -2.8 Transcriptional regulator, IclR family compare
Pf6N2E2_4162 -1.4 -2.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2438 -1.4 -1.0 hypothetical protein compare
Pf6N2E2_5664 -1.4 -4.5 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_2010 -1.4 -1.5 hypothetical protein compare
Pf6N2E2_819 -1.4 -1.6 Response regulator compare
Pf6N2E2_1445 -1.4 -2.0 Glutathione S-transferase compare
Pf6N2E2_6058 -1.4 -3.4 FIG139976: hypothetical protein compare
Pf6N2E2_3841 -1.4 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5155 -1.4 -2.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5972 -1.4 -2.3 hypothetical protein compare
Pf6N2E2_3251 -1.4 -6.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4611 -1.4 -3.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4451 -1.4 -5.5 FIG139438: lipoprotein B compare
Pf6N2E2_33 -1.4 -2.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5188 -1.4 -3.2 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3198 -1.3 -1.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4680 -1.3 -2.2 HTH-type transcriptional regulator BetI compare
Pf6N2E2_1124 -1.3 -2.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2258 -1.3 -5.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5775 -1.3 -2.0 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_2509 -1.3 -1.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3783 -1.3 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5727 -1.3 -4.6 FIG00955360: hypothetical protein compare
Pf6N2E2_5084 -1.3 -6.2 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_2487 -1.3 -1.1 FIG00956090: hypothetical protein compare
Pf6N2E2_5172 -1.3 -2.7 FOG: TPR repeat compare
Pf6N2E2_4272 -1.3 -3.1 putative membrane protein compare
Pf6N2E2_1633 -1.2 -3.3 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_971 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_5536 -1.2 -1.5 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2992 -1.2 -4.0 Regulatory protein RecX compare
Pf6N2E2_5785 -1.2 -2.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3603 -1.2 -4.6 FIG003573: hypothetical protein compare
Pf6N2E2_4276 -1.2 -3.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_766 -1.2 -2.9 Fap protein with C39 domain compare
Pf6N2E2_1434 -1.2 -2.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_4591 -1.2 -2.9 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_5806 -1.2 -2.7 hypothetical protein compare
Pf6N2E2_601 -1.1 -3.1 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_4054 -1.1 -2.1 Osmotically inducible protein C compare
Pf6N2E2_5739 -1.1 -1.4 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2315 -1.1 -3.1 VapC toxin protein compare
Pf6N2E2_3326 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_3475 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_4678 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_5987 -1.1 -3.9 OmpA family protein compare
Pf6N2E2_3504 -1.1 -5.6 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_6022 -1.1 -2.4 StbE replicon stabilization toxin compare
Pf6N2E2_3505 -1.1 -1.5 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4999 -1.1 -4.7 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4014 -1.1 -6.1 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_5027 -1.1 -6.3 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_1464 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_4585 -1.1 -7.1 Cell division protein FtsX compare
Pf6N2E2_2402 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_2189 -1.0 -3.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_248 -1.0 -4.1 hypothetical protein compare
Pf6N2E2_2549 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_5545 -1.0 -2.3 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_4427 -1.0 -2.0 FIG00954215: hypothetical protein compare
Pf6N2E2_447 -1.0 -3.6 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_1932 -1.0 -3.0 Transcriptional regulator, IclR family compare
Pf6N2E2_3830 -1.0 -2.9 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_4562 -1.0 -2.3 L-cystine uptake protein TcyP compare
Pf6N2E2_841 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_3253 -1.0 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_229 -1.0 -1.6 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_3243 -1.0 -6.8 FIG067310: hypothetical protein compare
Pf6N2E2_2469 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_5160 -1.0 -1.5 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5328 -1.0 -2.6 FIG00958649: hypothetical protein compare
Pf6N2E2_5679 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_226 -1.0 -2.6 2,3-dihydroxybiphenyl 1,2-dioxygenase compare
Pf6N2E2_504 -1.0 -2.1 DNA-binding response regulator compare
Pf6N2E2_1273 -1.0 -3.0 Probable RND efflux membrane fusion protein compare
Pf6N2E2_3100 -0.9 -1.6 FIG00953063: hypothetical protein compare
Pf6N2E2_623 -0.9 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_2513 -0.9 -2.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2908 -0.9 -2.5 Arginine deiminase (EC 3.5.3.6) compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sodium pyrophosphate dibasic in Pseudomonas fluorescens FW300-N2E2

For stress Sodium pyrophosphate dibasic across organisms