Experiment set5IT044 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_15605 -3.7 -2.0 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_05420 -3.6 -1.6 PTS glucose transporter subunit IIA compare
IAI47_04705 -3.3 -1.5 hypothetical protein compare
IAI47_05070 -3.1 -0.8 outer membrane protein assembly factor BamB compare
IAI47_05525 -3.0 -2.0 tRNA-Ala compare
IAI47_11375 -2.9 -2.1 hypothetical protein compare
IAI47_09580 -2.9 -4.9 FNR family transcription factor compare
IAI47_15485 -2.9 -1.3 molecular chaperone Skp compare
IAI47_04300 -2.8 -7.2 recombinase RecA compare
IAI47_13695 -2.7 -0.7 colicin uptake protein TolR compare
IAI47_13690 -2.7 -0.7 cell envelope integrity protein TolA compare
IAI47_17120 -2.7 -4.1 BolA family iron metabolism protein IbaG compare
IAI47_11760 -2.5 -1.5 TonB-dependent siderophore receptor compare
IAI47_00430 -2.5 -14.8 DNA polymerase I compare
IAI47_17020 -2.5 -2.4 30S ribosome-binding factor RbfA compare
IAI47_00870 -2.4 -0.9 50S ribosomal protein L31 compare
IAI47_11360 -2.4 -3.0 hypothetical protein compare
IAI47_14470 -2.2 -2.3 YbaB/EbfC family nucleoid-associated protein compare
IAI47_15595 -2.2 -2.4 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_15970 -2.1 -1.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_18400 -2.1 -3.0 tyrosine recombinase XerC compare
IAI47_00735 -2.1 -1.9 protein-export chaperone SecB compare
IAI47_00300 -2.1 -1.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_02345 -2.0 -1.0 5S ribosomal RNA compare
IAI47_08085 -1.9 -5.7 helix-turn-helix domain-containing protein compare
IAI47_06385 -1.9 -4.0 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_10725 -1.9 -1.4 DUF1656 domain-containing protein compare
IAI47_15880 -1.8 -2.4 DNA gyrase inhibitor YacG compare
IAI47_13065 -1.8 -1.8 DUF1418 family protein compare
IAI47_17255 -1.7 -2.5 DUF1043 family protein compare
IAI47_17035 -1.7 -2.7 ribosome maturation factor RimP compare
IAI47_18145 -1.7 -1.9 elongation factor Tu compare
IAI47_16085 -1.7 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_07475 -1.7 -1.1 hypothetical protein compare
IAI47_09360 -1.7 -1.2 peptide ABC transporter ATP-binding protein SapF compare
IAI47_06325 -1.6 -4.7 acetate kinase compare
IAI47_06410 -1.6 -5.2 NADH-quinone oxidoreductase subunit L compare
IAI47_11450 -1.6 -4.5 ankyrin repeat domain-containing protein compare
IAI47_21655 -1.6 -0.8 LacI family DNA-binding transcriptional regulator compare
IAI47_04425 -1.6 -7.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_11515 -1.6 -1.7 hypothetical protein compare
IAI47_02090 -1.6 -3.8 elongation factor Tu compare
IAI47_00780 -1.6 -3.3 6-phosphofructokinase compare
IAI47_10430 -1.6 -2.3 hypothetical protein compare
IAI47_11475 -1.6 -1.1 hypothetical protein compare
IAI47_17965 -1.6 -7.9 glucose-6-phosphate isomerase compare
IAI47_03375 -1.5 -7.8 peptide chain release factor 3 compare
IAI47_18240 -1.5 -2.5 NAD(P)H-flavin reductase compare
IAI47_11880 -1.5 -1.6 hypothetical protein compare
IAI47_05195 -1.5 -1.7 DnaA inactivator Hda compare
IAI47_12880 -1.5 -9.5 formate C-acetyltransferase compare
IAI47_06390 -1.5 -2.4 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_16095 -1.5 -3.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_13195 -1.5 -6.2 DNA starvation/stationary phase protection protein Dps compare
IAI47_15600 -1.4 -2.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_18715 -1.4 -1.7 YibL family ribosome-associated protein compare
IAI47_10775 -1.4 -3.8 ribonuclease T compare
IAI47_06420 -1.4 -3.3 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_08845 -1.4 -1.0 cell division topological specificity factor MinE compare
IAI47_06320 -1.4 -4.0 phosphate acetyltransferase compare
IAI47_09240 -1.4 -2.8 HTH-type transcriptional regulator CysB compare
IAI47_10840 -1.4 -3.8 pyruvate kinase PykF compare
IAI47_17560 -1.3 -1.1 ROK family transcriptional regulator compare
IAI47_12925 -1.3 -2.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_19940 -1.3 -3.0 hypothetical protein compare
IAI47_11480 -1.3 -1.8 hypothetical protein compare
IAI47_13760 -1.3 -2.6 succinate dehydrogenase membrane anchor subunit compare
IAI47_09235 -1.2 -1.0 type I DNA topoisomerase compare
IAI47_13840 -1.2 -2.7 replication initiation negative regulator SeqA compare
IAI47_21115 -1.2 -1.8 arsenate reductase (glutaredoxin) compare
IAI47_03135 -1.2 -4.4 outer membrane channel protein TolC compare
IAI47_20850 -1.2 -2.8 TetR/AcrR family transcriptional regulator compare
IAI47_12885 -1.2 -4.4 pyruvate formate lyase 1-activating protein compare
IAI47_09055 -1.2 -5.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_13700 -1.2 -3.0 Tol-Pal system protein TolQ compare
IAI47_04800 -1.2 -0.8 RnfH family protein compare
IAI47_19325 -1.2 -3.2 transposase compare
IAI47_03240 -1.1 -2.7 TonB system transport protein ExbD compare
IAI47_18415 -1.1 -1.6 lipoprotein compare
IAI47_00770 -1.1 -0.6 general stress protein compare
IAI47_00505 -1.1 -4.5 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_04835 -1.1 -5.0 ATP-dependent RNA helicase SrmB compare
IAI47_09300 -1.1 -3.5 crotonase/enoyl-CoA hydratase family protein compare
IAI47_06395 -1.1 -1.0 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_04865 -1.1 -1.5 SoxR-reducing system protein RseC compare
IAI47_03680 -1.1 -6.0 transketolase compare
IAI47_06365 -1.1 -2.6 NADH-quinone oxidoreductase subunit B compare
IAI47_11195 -1.1 -2.8 SH3 domain-containing protein compare
IAI47_14075 -1.1 -1.4 transcription antiterminator/RNA stability regulator CspE compare
IAI47_10320 -1.1 -0.6 Rrf2 family transcriptional regulator compare
IAI47_10935 -1.1 -3.9 vitamin B12 ABC transporter ATP-binding protein BtuD compare
IAI47_10535 -1.1 -3.2 YgdI/YgdR family lipoprotein compare
IAI47_06405 -1.1 -2.3 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_04895 -1.1 -2.5 pyridoxine 5'-phosphate synthase compare
IAI47_20600 -1.1 -1.4 hypothetical protein compare
IAI47_10100 -1.1 -1.6 ABC transporter ATP-binding protein compare
IAI47_16990 -1.0 -3.1 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_19690 -1.0 -0.6 hypothetical protein compare
IAI47_08445 -1.0 -0.6 Holliday junction branch migration protein RuvA compare
IAI47_04740 -1.0 -2.9 hypothetical protein compare
IAI47_09210 -1.0 -4.2 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_12060 -1.0 -3.2 beta-ketoacyl-ACP synthase II compare
IAI47_16995 -1.0 -0.9 protein YrbN compare
IAI47_13155 -1.0 -1.2 H-NS histone family protein compare
IAI47_17900 -1.0 -0.9 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_14545 -1.0 -2.8 hypothetical protein compare
IAI47_14805 -1.0 -4.0 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_19035 -1.0 -1.2 transcriptional regulator compare
IAI47_06940 -1.0 -0.5 tyrosine-protein kinase Wzc compare
IAI47_00875 -0.9 -0.7 met regulon transcriptional regulator MetJ compare
IAI47_11310 -0.9 -2.3 redox-regulated ATPase YchF compare
IAI47_18265 -0.9 -1.5 Sec-independent protein translocase subunit TatB compare
IAI47_16490 -0.9 -2.6 PTS sugar transporter subunit IIA compare
IAI47_07055 -0.9 -2.6 YbaK/prolyl-tRNA synthetase associated domain-containing protein compare
IAI47_01940 -0.9 -1.9 DUF2559 family protein compare
IAI47_06415 -0.9 -2.8 NADH-quinone oxidoreductase subunit M compare
IAI47_10470 -0.9 -1.0 electron transport complex subunit E compare
IAI47_20065 -0.9 -2.2 YebG family protein compare
IAI47_15810 -0.9 -2.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_04870 -0.9 -3.0 elongation factor 4 compare
IAI47_11465 -0.9 -3.7 type VI secretion system tip protein VgrG compare
IAI47_00760 -0.9 -2.1 envelope stress response regulator transcription factor CpxR compare
IAI47_02040 -0.9 -4.3 peptidylprolyl isomerase compare
IAI47_02400 -0.9 -0.8 YhdT family protein compare
IAI47_05120 -0.9 -1.8 DUF2158 domain-containing protein compare
IAI47_07165 -0.9 -1.1 exodeoxyribonuclease I compare
IAI47_13570 -0.9 -1.4 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_02725 -0.9 -3.1 gamma-glutamylcyclotransferase compare
IAI47_16930 -0.9 -2.9 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_17970 -0.9 -2.4 hypothetical protein compare
IAI47_06145 -0.9 -2.9 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
IAI47_04335 -0.8 -1.9 tRNA-Arg compare
IAI47_07020 -0.8 -0.9 hypothetical protein compare
IAI47_12920 -0.8 -2.2 thioredoxin-disulfide reductase compare
IAI47_06655 -0.8 -2.1 1-phosphofructokinase compare
IAI47_06370 -0.8 -2.9 NADH-quinone oxidoreductase subunit C/D compare
IAI47_13180 -0.8 -2.8 manganese-binding transcriptional regulator MntR compare
IAI47_02515 -0.8 -2.2 transcriptional regulator ArgR compare
IAI47_05810 -0.8 -1.5 hypothetical protein compare
IAI47_12875 -0.8 -3.3 formate transporter FocA compare
IAI47_06475 -0.8 -3.0 transcriptional regulator RcsB compare
IAI47_04400 -0.8 -3.3 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_11510 -0.8 -2.3 hypothetical protein compare
IAI47_16250 -0.8 -2.7 inosine/xanthosine triphosphatase compare
IAI47_10545 -0.8 -1.7 hypothetical protein compare
IAI47_06360 -0.8 -1.0 NADH-quinone oxidoreductase subunit A compare
IAI47_18830 -0.8 -0.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_18840 -0.8 -1.9 membrane protein insertion efficiency factor YidD compare
IAI47_21830 -0.8 -1.2 hypothetical protein compare
IAI47_10790 -0.8 -2.0 YnhF family membrane protein compare
IAI47_08325 -0.8 -3.9 protein-glutamate O-methyltransferase CheR compare
IAI47_10115 -0.8 -2.3 hypothetical protein compare
IAI47_12085 -0.8 -3.4 phosphate acyltransferase PlsX compare
IAI47_18420 -0.8 -4.6 class I adenylate cyclase compare
IAI47_18055 -0.8 -2.7 DNA-binding protein HU-alpha compare
IAI47_10225 -0.8 -2.0 pyrroloquinoline quinone precursor peptide PqqA compare
IAI47_07375 -0.7 -3.0 ABC transporter permease compare
IAI47_05580 -0.7 -0.9 membrane protein YpdK compare
IAI47_19275 -0.7 -2.3 DMT family transporter compare
IAI47_20995 -0.7 -1.1 hypothetical protein compare
IAI47_13520 -0.7 -2.9 malonyl-ACP O-methyltransferase BioC compare
IAI47_02585 -0.7 -1.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_13890 -0.7 -3.6 ROK family transcriptional regulator compare
IAI47_10520 -0.7 -1.3 pyridoxamine 5'-phosphate oxidase compare
IAI47_05090 -0.7 -1.9 hypothetical protein compare
IAI47_06900 -0.7 -1.8 phosphatase PAP2 family protein compare
IAI47_07955 -0.7 -1.2 protein DsrB compare
IAI47_18215 -0.7 -0.6 Trk system potassium transporter TrkH compare
IAI47_21345 -0.7 -2.6 DUF1471 domain-containing protein compare
IAI47_10160 -0.7 -2.3 AAA family ATPase compare
IAI47_08745 -0.7 -1.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_11625 -0.7 -1.2 DUF1311 domain-containing protein compare
IAI47_03820 -0.7 -1.6 site-specific tyrosine recombinase XerD compare
IAI47_14695 -0.7 -2.6 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_00465 -0.7 -0.5 ribosome-dependent GTPase TypA compare
IAI47_07015 -0.7 -2.7 ABC transporter ATP-binding protein compare
IAI47_06380 -0.7 -1.3 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_17005 -0.7 -3.3 polyribonucleotide nucleotidyltransferase compare
IAI47_08605 -0.7 -1.2 hypothetical protein compare
IAI47_18755 -0.7 -2.5 glutathione S-transferase compare
IAI47_09380 -0.7 -3.1 peptide ABC transporter substrate-binding protein SapA compare
IAI47_21080 -0.7 -2.0 transposase compare
IAI47_08300 -0.7 -3.9 chemotaxis protein CheA compare
IAI47_06235 -0.7 -2.8 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_06245 -0.7 -1.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_05465 -0.7 -1.9 bile acid:sodium symporter compare
IAI47_10155 -0.7 -3.1 thiol-disulfide oxidoreductase DCC family protein compare
IAI47_16825 -0.7 -3.0 ribonuclease E inhibitor RraB compare
IAI47_15625 -0.7 -1.9 RNA 2',3'-cyclic phosphodiesterase compare
IAI47_05425 -0.7 -1.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_09280 -0.6 -2.4 stress response translation initiation inhibitor YciH compare
IAI47_12430 -0.6 -2.9 hypothetical protein compare
IAI47_12320 -0.6 -2.1 hotdog family protein compare
IAI47_16840 -0.6 -3.5 carbamate kinase compare
IAI47_05200 -0.6 -2.0 arsenate reductase (glutaredoxin) compare
IAI47_18675 -0.6 -2.3 MarR family transcriptional regulator compare
IAI47_09875 -0.6 -3.5 ABC transporter substrate-binding protein compare
IAI47_00500 -0.6 -3.8 ATP-dependent DNA helicase RecG compare
IAI47_09040 -0.6 -0.6 NAD-dependent epimerase compare
IAI47_07895 -0.6 -3.6 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For survival Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms