Experiment set5IT043 for Pseudomonas fluorescens FW300-N2E3

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
AO353_09045 -4.9 -1.9 hypothetical protein compare
AO353_18285 -4.3 -2.7 3-phosphoglycerate kinase compare
AO353_27710 -4.2 -1.9 DNA repair protein compare
AO353_19280 -4.0 -2.0 hypothetical protein compare
AO353_18560 -3.9 -1.7 class I peptide chain release factor compare
AO353_27925 -3.8 -2.3 hypothetical protein compare
AO353_18595 -3.8 -3.7 flagellar biosynthesis protein FlgF conserved
AO353_17750 -3.7 -2.2 transcriptional regulator compare
AO353_02280 -3.7 -1.7 DNA mismatch repair protein MutS compare
AO353_14590 -3.7 -1.4 serine kinase/phosphatase compare
AO353_00105 -3.7 -1.8 hypothetical protein compare
AO353_20565 -3.6 -1.1 tRNA-Ala compare
AO353_23495 -3.6 -1.8 SAM-dependent methyltransferase compare
AO353_04365 -3.5 -5.3 recombinase XerD compare
AO353_09560 -3.5 -1.5 type VI secretion protein compare
AO353_02660 -3.3 -4.5 peptidase P60 compare
AO353_19360 -3.3 -1.9 peroxiredoxin compare
AO353_21625 -3.3 -1.9 Fe/S biogenesis protein NfuA compare
AO353_09315 -3.2 -10.0 LysR family transcriptional regulator compare
AO353_10670 -3.2 -6.8 shikimate dehydrogenase compare
AO353_09720 -3.2 -1.2 hypothetical protein compare
AO353_08195 -3.1 -4.8 non-canonical purine NTP pyrophosphatase compare
AO353_07075 -3.1 -4.3 elongation factor Tu compare
AO353_15260 -3.1 -3.7 stringent starvation protein A compare
AO353_27650 -3.1 -3.0 cell division protein FtsK compare
AO353_06850 -3.1 -2.1 MFS transporter compare
AO353_00495 -3.1 -1.7 DNA topoisomerase I compare
AO353_23950 -3.1 -2.9 hypothetical protein compare
AO353_09115 -2.9 -7.1 diguanylate cyclase compare
AO353_18745 -2.9 -2.3 flagellar biosynthesis protein flip compare
AO353_06585 -2.9 -6.1 hypothetical protein compare
AO353_05130 -2.9 -1.7 anti-anti-sigma factor compare
AO353_06455 -2.8 -1.8 D-alanyl-D-alanine carboxypeptidase compare
AO353_14220 -2.8 -1.3 ribosomal large subunit pseudouridine synthase D compare
AO353_18680 -2.8 -6.0 flagellar M-ring protein FliF conserved
AO353_18720 -2.8 -9.4 flagellar hook-length control protein conserved
AO353_01305 -2.8 -8.0 hypothetical protein conserved
AO353_18615 -2.8 -8.7 flagellar biosynthesis protein FlgJ compare
AO353_02845 -2.8 -14.2 flagellar biosynthesis protein FlgE conserved
AO353_02860 -2.8 -5.6 flagellar biosynthesis protein FlgB compare
AO353_26595 -2.7 -4.4 copper resistance protein CopD compare
AO353_02855 -2.7 -7.0 flagellar basal-body rod protein FlgC compare
AO353_07140 -2.7 -14.6 peptidase M23 compare
AO353_00575 -2.7 -7.7 chemotaxis protein conserved
AO353_02875 -2.7 -8.2 flagellar biosynthesis protein FlgA compare
AO353_18925 -2.7 -1.7 ATPase compare
AO353_18685 -2.7 -7.2 flagellar motor switch protein FliG compare
AO353_06670 -2.6 -2.9 MFS transporter compare
AO353_16655 -2.6 -3.1 phage baseplate protein compare
AO353_07290 -2.6 -6.9 mannose-1-phosphate guanylyltransferase compare
AO353_18700 -2.6 -1.5 flagellar biogenesis protein compare
AO353_11945 -2.6 -0.8 4-oxalocrotonate tautomerase compare
AO353_18750 -2.6 -6.6 flagellar biosynthetic protein FliQ compare
AO353_10055 -2.6 -9.4 DNA helicase II compare
AO353_01190 -2.6 -1.6 hypothetical protein compare
AO353_16710 -2.6 -2.3 hypothetical protein compare
AO353_09050 -2.6 -3.5 recombinase XerC compare
AO353_09135 -2.6 -1.4 cytochrome C compare
AO353_18785 -2.6 -7.8 flagellar biosynthesis sigma factor conserved
AO353_07315 -2.5 -1.6 rRNA methyltransferase compare
AO353_18425 -2.5 -4.0 hypothetical protein compare
AO353_16805 -2.5 -5.9 recombinase RecA compare
AO353_08875 -2.5 -1.9 amino acid ABC transporter ATP-binding protein compare
AO353_10945 -2.5 -2.4 cytochrome C compare
AO353_22855 -2.5 -2.6 hypothetical protein compare
AO353_18780 -2.5 -4.8 cobyrinic acid a,c-diamide synthase compare
AO353_15250 -2.4 -2.9 cytochrome B compare
AO353_05340 -2.4 -5.8 histidine kinase compare
AO353_03615 -2.4 -1.7 cold-shock protein compare
AO353_27090 -2.4 -1.4 hypothetical protein compare
AO353_21410 -2.4 -2.2 hypothetical protein compare
AO353_18665 -2.4 -7.3 histidine kinase conserved
AO353_19530 -2.4 -1.3 quinohemoprotein amine dehydrogenase compare
AO353_15490 -2.4 -1.5 hypothetical protein compare
AO353_27550 -2.4 -1.5 hypothetical protein compare
AO353_07145 -2.4 -8.8 anhydro-N-acetylmuramic acid kinase compare
AO353_05145 -2.4 -6.0 ABC transporter permease compare
AO353_16380 -2.4 -3.6 hypothetical protein compare
AO353_12500 -2.4 -1.4 shikimate kinase compare
AO353_13155 -2.3 -3.2 hypothetical protein compare
AO353_19275 -2.3 -5.3 histidine kinase compare
AO353_18625 -2.3 -10.1 flagellar biosynthesis protein FlgL conserved
AO353_23620 -2.3 -2.2 hypothetical protein compare
AO353_04500 -2.3 -2.4 DNA repair protein RecO compare
AO353_10320 -2.3 -1.2 hypothetical protein compare
AO353_09745 -2.3 -1.6 hypothetical protein compare
AO353_02595 -2.3 -2.1 cobalamin synthase compare
AO353_18730 -2.3 -4.4 flagellar motor switch protein FliM conserved
AO353_27720 -2.3 -4.6 cupin compare
AO353_00660 -2.3 -2.9 transcriptional regulator compare
AO353_20660 -2.2 -3.0 pseudouridine synthase compare
AO353_20200 -2.2 -3.7 peptidylprolyl isomerase compare
AO353_20650 -2.2 -7.1 peptidoglycan-binding protein conserved
AO353_20185 -2.2 -5.7 DNA-binding protein compare
AO353_18645 -2.2 -11.5 flagellar cap protein FliD conserved
AO353_14400 -2.2 -3.7 Fis family transcriptional regulator compare
AO353_11750 -2.2 -2.3 ATPase compare
AO353_18660 -2.2 -8.4 AAA family ATPase compare
AO353_28930 -2.2 -1.8 hypothetical protein compare
AO353_17635 -2.2 -7.7 RNA polymerase subunit sigma compare
AO353_12225 -2.2 -3.4 hypothetical protein compare
AO353_17885 -2.2 -1.0 hypothetical protein compare
AO353_10825 -2.2 -11.7 hypothetical protein compare
AO353_23590 -2.2 -1.6 ArsR family transcriptional regulator compare
AO353_00620 -2.2 -2.1 cytochrome C oxidase Cbb3 compare
AO353_04110 -2.2 -4.5 hypothetical protein compare
AO353_22920 -2.2 -5.3 GntR family transcriptional regulator compare
AO353_11485 -2.2 -3.7 hypothetical protein compare
AO353_18800 -2.2 -5.7 chemotaxis protein CheA conserved
AO353_00635 -2.1 -2.8 hypothetical protein compare
AO353_02865 -2.1 -8.4 chemotaxis protein conserved
AO353_05510 -2.1 -6.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_11920 -2.1 -1.7 hypothetical protein compare
AO353_06365 -2.1 -9.9 hypothetical protein compare
AO353_17175 -2.1 -2.6 beta-ketoadipyl CoA thiolase compare
AO353_15185 -2.1 -4.2 ATPase compare
AO353_18695 -2.1 -7.0 flagellar protein export ATPase FliI conserved
AO353_11530 -2.1 -7.4 diguanylate cyclase compare
AO353_18620 -2.1 -13.2 flagellar biosynthesis protein FlgK conserved
AO353_09320 -2.0 -8.1 ATP-dependent DNA helicase RecG compare
AO353_18755 -2.0 -4.7 flagellar biosynthetic protein FliR conserved
AO353_06040 -2.0 -3.1 exodeoxyribonuclease V subunit alpha compare
AO353_19265 -2.0 -3.5 hypothetical protein compare
AO353_18650 -2.0 -6.6 flagellar export chaperone FliS conserved
AO353_14395 -2.0 -3.6 poly(A) polymerase compare
AO353_08350 -2.0 -6.8 hypothetical protein compare
AO353_17025 -2.0 -10.6 beta-agarase conserved
AO353_05240 -2.0 -2.0 rod shape-determining protein MreD compare
AO353_07895 -2.0 -2.4 fructose-bisphosphate aldolase compare
AO353_13865 -2.0 -2.0 hypothetical protein compare
AO353_28425 -2.0 -3.5 TetR family transcriptional regulator compare
AO353_15900 -2.0 -1.9 GTP-binding protein compare
AO353_17640 -2.0 -2.0 serine peptidase compare
AO353_17160 -2.0 -1.7 aspartate-semialdehyde dehydrogenase compare
AO353_18675 -2.0 -5.3 flagellar hook-basal body protein FliE compare
AO353_13640 -2.0 -3.5 histidine kinase compare
AO353_28565 -2.0 -2.0 hypothetical protein compare
AO353_03590 -2.0 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_22685 -2.0 -3.2 peroxidase compare
AO353_07295 -2.0 -8.6 aminoglycoside phosphotransferase compare
AO353_16925 -2.0 -10.8 AmpG family muropeptide MFS transporter compare
AO353_18820 -2.0 -6.7 cobalamin biosynthesis protein CobQ conserved
AO353_18540 -1.9 -1.3 pseudouridine synthase compare
AO353_00515 -1.9 -3.3 hypothetical protein compare
AO353_00455 -1.9 -1.4 beta-hexosaminidase compare
AO353_18610 -1.9 -3.9 flagellar biosynthesis protein FlgI compare
AO353_20175 -1.9 -2.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_15930 -1.9 -4.2 peptidase M23 compare
AO353_26050 -1.9 -2.3 hypothetical protein compare
AO353_28890 -1.9 -3.5 hypothetical protein compare
AO353_03710 -1.9 -2.3 formyltetrahydrofolate deformylase compare
AO353_06045 -1.9 -5.3 exodeoxyribonuclease V subunit beta compare
AO353_20425 -1.9 -2.1 ArsC family transcriptional regulator compare
AO353_02070 -1.9 -5.0 prephenate dehydratase compare
AO353_20800 -1.9 -1.0 hypothetical protein compare
AO353_18790 -1.9 -2.5 histidine kinase compare
AO353_18670 -1.9 -5.9 Fis family transcriptional regulator conserved
AO353_27855 -1.9 -1.4 MarR family transcriptional regulator compare
AO353_14775 -1.9 -5.4 hypothetical protein compare
AO353_18605 -1.9 -4.1 flagellar basal body L-ring protein conserved
AO353_28110 -1.9 -4.1 TetR family transcriptional regulator compare
AO353_14975 -1.9 -4.1 hypothetical protein compare
AO353_08115 -1.9 -5.7 energy transducer TonB compare
AO353_02850 -1.9 -5.9 flagellar biosynthesis protein FlgD compare
AO353_24595 -1.8 -1.5 hypothetical protein compare
AO353_10930 -1.8 -6.0 DNA polymerase I compare
AO353_13160 -1.8 -2.1 membrane protease HflC compare
AO353_18815 -1.8 -5.0 flagellar motor protein MotD conserved
AO353_19085 -1.8 -1.8 organic hydroperoxide resistance protein compare
AO353_22700 -1.8 -1.8 LexA family transcriptional regulator compare
AO353_04565 -1.8 -4.6 nucleoid-associated protein compare
AO353_08455 -1.8 -4.6 hypothetical protein compare
AO353_16415 -1.8 -7.1 beta-(1-3)-glucosyl transferase conserved
AO353_18775 -1.8 -4.9 flagellar biosynthesis protein FlhF compare
AO353_12935 -1.8 -3.2 glycosyltransferase compare
AO353_08685 -1.8 -6.3 N-acetylglutamate synthase compare
AO353_10495 -1.8 -2.7 serine hydroxymethyltransferase compare
AO353_22370 -1.8 -3.4 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_28555 -1.8 -1.3 LysR family transcriptional regulator compare
AO353_07355 -1.8 -4.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03820 -1.8 -2.2 Asp/Glu/hydantoin racemase compare
AO353_01780 -1.8 -8.7 heat-shock protein Hsp90 compare
AO353_21455 -1.7 -1.3 cation:proton antiporter compare
AO353_06050 -1.7 -4.7 exodeoxyribonuclease V subunit gamma compare
AO353_15560 -1.7 -3.6 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_06745 -1.7 -2.1 zinc-binding protein compare
AO353_09240 -1.7 -1.7 acetylglutamate kinase compare
AO353_02520 -1.7 -1.7 sodium transporter compare
AO353_00825 -1.7 -2.8 porin compare
AO353_00510 -1.7 -4.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_18805 -1.7 -5.0 chemotaxis protein CheY conserved
AO353_06415 -1.7 -3.0 hypothetical protein compare
AO353_04190 -1.7 -1.5 glycerol-3-phosphate dehydrogenase compare
AO353_22220 -1.7 -3.5 copper resistance protein CopC compare
AO353_18810 -1.7 -4.1 flagellar motor protein conserved
AO353_14740 -1.7 -2.8 GTP-binding protein compare
AO353_15555 -1.7 -3.0 fumarylacetoacetase compare
AO353_12470 -1.7 -9.5 peptidase compare
AO353_18760 -1.7 -6.1 flagellar biosynthetic protein FlhB conserved
AO353_03580 -1.7 -3.2 ATP-dependent DNA helicase RuvB compare


Specific Phenotypes

For 61 genes in this experiment

For motility Agar in Pseudomonas fluorescens FW300-N2E3

For motility Agar across organisms