Experiment set5IT042 for Pseudomonas fluorescens FW300-N2E2
LB with Cadmium chloride hemipentahydrate 0.00005 M
Group: stressMedia: LB + Cadmium chloride hemipentahydrate (5e-05 M), pH=7
Culturing: pseudo6_N2E2_ML5, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=500 rpm
By: Hans_Hualan on 2/2/2016
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 3 genes in this experiment
For stress Cadmium chloride hemipentahydrate in Pseudomonas fluorescens FW300-N2E2
For stress Cadmium chloride hemipentahydrate across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycine, serine and threonine metabolism
- Cysteine metabolism
- Selenoamino acid metabolism
- Sulfur metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-serine degradation | 3 | 3 | 3 |
| D-serine degradation | 3 | 3 | 2 |
| L-cysteine degradation II | 3 | 3 | 2 |
| L-tryptophan degradation II (via pyruvate) | 3 | 2 | 2 |
| L-cysteine biosynthesis I | 2 | 2 | 1 |
| glycine betaine degradation III | 7 | 7 | 3 |
| felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis | 5 | 2 | 2 |
| glycine betaine degradation I | 8 | 6 | 3 |
| glycine cleavage | 3 | 3 | 1 |
| glycine degradation | 3 | 3 | 1 |
| glycine biosynthesis II | 3 | 3 | 1 |
| L-methionine biosynthesis II | 6 | 5 | 2 |
| L-mimosine degradation | 8 | 4 | 2 |
| glutathione-mediated detoxification I | 8 | 3 | 2 |
| seleno-amino acid biosynthesis (plants) | 5 | 3 | 1 |
| hydrogen sulfide biosynthesis II (mammalian) | 6 | 1 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | 15 | 13 | 2 |
| purine nucleobases degradation II (anaerobic) | 24 | 16 | 3 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 9 | 1 |
| superpathway of seleno-compound metabolism | 19 | 6 | 1 |