Experiment set5IT042 for Pseudomonas fluorescens FW300-N2E3

Compare to:

outer cut, LB soft agar motility assay

Genes with specific phenotypes:

  gene name fitness t score description  
AO353_18680 -3.9 -5.9 flagellar M-ring protein FliF conserved
AO353_02875 -3.7 -7.1 flagellar biosynthesis protein FlgA compare
AO353_18785 -3.7 -7.4 flagellar biosynthesis sigma factor conserved
AO353_02860 -3.5 -5.3 flagellar biosynthesis protein FlgB compare
AO353_18730 -3.4 -6.8 flagellar motor switch protein FliM conserved
AO353_18755 -3.2 -6.9 flagellar biosynthetic protein FliR conserved
AO353_18645 -3.2 -14.7 flagellar cap protein FliD conserved
AO353_18810 -3.2 -6.6 flagellar motor protein conserved
AO353_02865 -3.0 -9.7 chemotaxis protein conserved
AO353_18660 -3.0 -8.8 AAA family ATPase compare
AO353_18800 -2.9 -6.5 chemotaxis protein CheA conserved
AO353_18620 -2.8 -16.1 flagellar biosynthesis protein FlgK conserved
AO353_18760 -2.8 -8.0 flagellar biosynthetic protein FlhB conserved
AO353_18720 -2.7 -10.7 flagellar hook-length control protein conserved
AO353_18750 -2.7 -6.5 flagellar biosynthetic protein FliQ compare
AO353_02855 -2.7 -6.6 flagellar basal-body rod protein FlgC compare
AO353_18625 -2.7 -11.6 flagellar biosynthesis protein FlgL conserved
AO353_18665 -2.7 -8.0 histidine kinase conserved
AO353_18595 -2.6 -5.3 flagellar biosynthesis protein FlgF conserved
AO353_01305 -2.5 -8.8 hypothetical protein conserved
AO353_18770 -2.5 -7.9 flagellar biosynthesis protein FlhA conserved
AO353_02845 -2.5 -12.2 flagellar biosynthesis protein FlgE conserved
AO353_18635 -2.5 -8.7 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_18690 -2.5 -6.5 flagellar assembly protein FliH compare
AO353_06150 -2.4 -6.2 hypothetical protein conserved
AO353_18825 -2.4 -8.2 chemotaxis protein CheW conserved
AO353_12850 -2.4 -12.6 diguanylate cyclase compare
AO353_18675 -2.4 -5.1 flagellar hook-basal body protein FliE compare
AO353_18670 -2.3 -6.6 Fis family transcriptional regulator conserved
AO353_01645 -2.3 -6.5 hypothetical protein conserved
AO353_18685 -2.3 -6.8 flagellar motor switch protein FliG compare
AO353_16415 -2.3 -10.6 beta-(1-3)-glucosyl transferase conserved
AO353_19275 -2.2 -5.5 histidine kinase compare
AO353_18650 -2.2 -6.7 flagellar export chaperone FliS conserved
AO353_14230 -2.1 -9.8 ATP-dependent chaperone ClpB conserved
AO353_10905 -2.1 -8.2 zinc ABC transporter ATP-binding protein conserved
AO353_18815 -2.1 -5.6 flagellar motor protein MotD conserved
AO353_20650 -2.1 -7.5 peptidoglycan-binding protein conserved
AO353_18615 -2.0 -6.0 flagellar biosynthesis protein FlgJ compare
AO353_10825 -2.0 -10.0 hypothetical protein compare
AO353_17025 -1.9 -9.4 beta-agarase conserved
AO353_05675 -1.9 -5.4 protein RnfH compare
AO353_00700 -1.8 -6.0 Cro/Cl family transcriptional regulator compare
AO353_18820 -1.6 -5.2 cobalamin biosynthesis protein CobQ conserved
AO353_15430 -1.6 -6.8 chemotaxis protein CheW compare
AO353_17955 -1.5 -5.6 MFS transporter compare
AO353_19315 -1.5 -6.3 acyl-CoA dehydrogenase compare
AO353_04450 -1.3 -5.4 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) compare
AO353_08805 +1.1 5.3 flagellar basal body protein FliL compare
AO353_03790 +1.1 5.5 hypothetical protein conserved
AO353_09020 +1.2 8.7 adenylate cyclase compare
AO353_12065 +1.2 8.5 MFS transporter compare
AO353_20465 +1.2 6.9 diguanylate cyclase compare
AO353_18710 +1.3 8.8 chemotaxis protein CheY conserved
AO353_07200 +1.5 6.9 cyclic AMP receptor protein compare
AO353_12095 +1.5 5.2 amino acid ABC transporter substrate-binding protein compare
AO353_11520 +1.7 5.4 diguanylate cyclase compare
AO353_08080 +1.7 7.4 chemotaxis protein compare
AO353_19640 +1.7 5.7 chemotaxis protein CheY compare
AO353_12125 +2.0 5.4 glutaredoxin compare
AO353_09325 +2.1 8.8 histidine kinase compare
AO353_16035 +2.3 12.6 Lon protease compare
AO353_20615 +2.3 9.2 LysR family transcriptional regulator compare
AO353_08085 +2.3 11.6 histidine kinase conserved
AO353_12140 +2.4 7.1 hypothetical protein conserved
AO353_02125 +2.4 8.6 ABC transporter ATP-binding protein compare
AO353_13700 +2.4 15.8 diguanylate cyclase conserved
AO353_14025 +2.6 16.5 diguanylate phosphodiesterase compare
AO353_18205 +2.7 10.9 histidine kinase conserved
AO353_08090 +2.7 9.2 chemotaxis protein conserved
AO353_15375 +3.1 17.4 deoxyribonuclease conserved
AO353_13090 +3.1 15.0 flagellar motor stator protein MotA conserved
AO353_13095 +3.6 8.6 flagellar motor protein MotB conserved
AO353_03965 +3.7 10.3 type IV secretion protein Rhs compare


Specific phenotypes for motility Agar across organisms