Experiment set5IT042 for Pseudomonas fluorescens FW300-N2E3

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
AO353_02885 -5.1 -2.3 flagellar biosynthesis protein FlgN compare
AO353_29215 -4.6 -2.1 alpha/beta hydrolase compare
AO353_09440 -4.5 -2.0 type VI secretion protein compare
AO353_02940 -4.4 -2.6 DNA-binding protein compare
AO353_04325 -4.3 -2.2 hypothetical protein compare
AO353_18715 -4.3 -1.7 histidine kinase compare
AO353_09315 -4.1 -8.8 LysR family transcriptional regulator compare
AO353_12690 -4.0 -0.9 acyl carrier protein compare
AO353_00105 -3.9 -2.0 hypothetical protein compare
AO353_00455 -3.9 -3.3 beta-hexosaminidase compare
AO353_18680 -3.9 -5.9 flagellar M-ring protein FliF conserved
AO353_04110 -3.8 -4.6 hypothetical protein compare
AO353_05010 -3.8 -2.1 HopJ type III effector protein compare
AO353_02875 -3.7 -7.1 flagellar biosynthesis protein FlgA compare
AO353_18135 -3.7 -2.3 hypothetical protein compare
AO353_18785 -3.7 -7.4 flagellar biosynthesis sigma factor conserved
AO353_02100 -3.6 -2.4 phosphoglycolate phosphatase compare
AO353_22685 -3.5 -2.4 peroxidase compare
AO353_02860 -3.5 -5.3 flagellar biosynthesis protein FlgB compare
AO353_06720 -3.5 -1.9 NrdR family transcriptional regulator compare
AO353_09720 -3.5 -1.3 hypothetical protein compare
AO353_18730 -3.4 -6.8 flagellar motor switch protein FliM conserved
AO353_00495 -3.4 -1.9 DNA topoisomerase I compare
AO353_07140 -3.3 -13.9 peptidase M23 compare
AO353_27650 -3.3 -3.9 cell division protein FtsK compare
AO353_10670 -3.3 -7.3 shikimate dehydrogenase compare
AO353_18755 -3.2 -6.9 flagellar biosynthetic protein FliR conserved
AO353_09030 -3.2 -1.0 iron donor protein CyaY compare
AO353_18645 -3.2 -14.7 flagellar cap protein FliD conserved
AO353_16805 -3.2 -4.9 recombinase RecA compare
AO353_09050 -3.2 -3.1 recombinase XerC compare
AO353_18810 -3.2 -6.6 flagellar motor protein conserved
AO353_16710 -3.2 -2.5 hypothetical protein compare
AO353_00660 -3.2 -3.1 transcriptional regulator compare
AO353_09345 -3.1 -2.3 hypothetical protein compare
AO353_06455 -3.1 -2.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_06725 -3.0 -2.1 hypothetical protein compare
AO353_15250 -3.0 -2.1 cytochrome B compare
AO353_02865 -3.0 -9.7 chemotaxis protein conserved
AO353_18660 -3.0 -8.8 AAA family ATPase compare
AO353_00750 -3.0 -4.5 GntR family transcriptional regulator compare
AO353_06040 -2.9 -2.0 exodeoxyribonuclease V subunit alpha compare
AO353_17635 -2.9 -9.6 RNA polymerase subunit sigma compare
AO353_06585 -2.9 -6.8 hypothetical protein compare
AO353_18800 -2.9 -6.5 chemotaxis protein CheA conserved
AO353_18775 -2.9 -7.5 flagellar biosynthesis protein FlhF compare
AO353_07145 -2.9 -8.1 anhydro-N-acetylmuramic acid kinase compare
AO353_07295 -2.9 -13.5 aminoglycoside phosphotransferase compare
AO353_03580 -2.9 -2.0 ATP-dependent DNA helicase RuvB compare
AO353_07075 -2.9 -5.1 elongation factor Tu compare
AO353_23440 -2.8 -2.4 hypothetical protein compare
AO353_20185 -2.8 -6.5 DNA-binding protein compare
AO353_18620 -2.8 -16.1 flagellar biosynthesis protein FlgK conserved
AO353_03585 -2.8 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_18760 -2.8 -8.0 flagellar biosynthetic protein FlhB conserved
AO353_00460 -2.8 -3.0 TetR family transcriptional regulator compare
AO353_12930 -2.8 -2.7 GlcNAc-PI de-N-acetylase compare
AO353_00760 -2.8 -2.9 hypothetical protein compare
AO353_07290 -2.7 -6.9 mannose-1-phosphate guanylyltransferase compare
AO353_18720 -2.7 -10.7 flagellar hook-length control protein conserved
AO353_18750 -2.7 -6.5 flagellar biosynthetic protein FliQ compare
AO353_00540 -2.7 -3.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_02855 -2.7 -6.6 flagellar basal-body rod protein FlgC compare
AO353_11750 -2.7 -2.5 ATPase compare
AO353_18625 -2.7 -11.6 flagellar biosynthesis protein FlgL conserved
AO353_18665 -2.7 -8.0 histidine kinase conserved
AO353_09490 -2.7 -3.8 hypothetical protein compare
AO353_03590 -2.7 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_02070 -2.7 -6.8 prephenate dehydratase compare
AO353_18595 -2.6 -5.3 flagellar biosynthesis protein FlgF conserved
AO353_02005 -2.6 -1.4 hypothetical protein compare
AO353_03520 -2.6 -3.3 hypothetical protein compare
AO353_12500 -2.6 -1.6 shikimate kinase compare
AO353_00650 -2.6 -3.0 cytochrome biogenesis protein compare
AO353_14400 -2.6 -3.9 Fis family transcriptional regulator compare
AO353_21630 -2.6 -2.2 precorrin-4 C11-methyltransferase compare
AO353_04365 -2.5 -5.1 recombinase XerD compare
AO353_18745 -2.5 -2.3 flagellar biosynthesis protein flip compare
AO353_01305 -2.5 -8.8 hypothetical protein conserved
AO353_17410 -2.5 -1.9 arylsulfate sulfotransferase compare
AO353_01595 -2.5 -2.3 Flp pilus assembly protein CpaB compare
AO353_10945 -2.5 -2.9 cytochrome C compare
AO353_18770 -2.5 -7.9 flagellar biosynthesis protein FlhA conserved
AO353_02845 -2.5 -12.2 flagellar biosynthesis protein FlgE conserved
AO353_10930 -2.5 -6.6 DNA polymerase I compare
AO353_02250 -2.5 -3.4 chorismate synthase compare
AO353_18635 -2.5 -8.7 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_20800 -2.5 -1.1 hypothetical protein compare
AO353_18690 -2.5 -6.5 flagellar assembly protein FliH compare
AO353_14940 -2.5 -3.7 malate:quinone oxidoreductase compare
AO353_10520 -2.5 -6.1 GntR family transcriptional regulator compare
AO353_15185 -2.4 -4.1 ATPase compare
AO353_07355 -2.4 -3.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_06150 -2.4 -6.2 hypothetical protein conserved
AO353_06460 -2.4 -7.1 hypothetical protein compare
AO353_18825 -2.4 -8.2 chemotaxis protein CheW conserved
AO353_20170 -2.4 -5.9 trigger factor compare
AO353_24340 -2.4 -1.2 TetR family transcriptional regulator compare
AO353_12850 -2.4 -12.6 diguanylate cyclase compare
AO353_21625 -2.4 -2.3 Fe/S biogenesis protein NfuA compare
AO353_18675 -2.4 -5.1 flagellar hook-basal body protein FliE compare
AO353_20785 -2.4 -5.3 carbon storage regulator CsrA compare
AO353_21100 -2.4 -2.5 DNA-binding protein compare
AO353_18605 -2.4 -4.8 flagellar basal body L-ring protein conserved
AO353_17885 -2.4 -1.1 hypothetical protein compare
AO353_18670 -2.3 -6.6 Fis family transcriptional regulator conserved
AO353_27350 -2.3 -2.5 hypothetical protein compare
AO353_16155 -2.3 -2.8 antibiotic biosynthesis monooxygenase compare
AO353_13155 -2.3 -3.8 hypothetical protein compare
AO353_01645 -2.3 -6.5 hypothetical protein conserved
AO353_02000 -2.3 -3.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_18685 -2.3 -6.8 flagellar motor switch protein FliG compare
AO353_18780 -2.3 -5.9 cobyrinic acid a,c-diamide synthase compare
AO353_16415 -2.3 -10.6 beta-(1-3)-glucosyl transferase conserved
AO353_09040 -2.2 -1.7 diaminopimelate epimerase compare
AO353_15905 -2.2 -7.1 outer membrane protein assembly factor BamB compare
AO353_18830 -2.2 -4.7 chemotaxis protein CheW compare
AO353_19275 -2.2 -5.5 histidine kinase compare
AO353_18650 -2.2 -6.7 flagellar export chaperone FliS conserved
AO353_19145 -2.2 -3.6 protease HtpX compare
AO353_11530 -2.2 -8.1 diguanylate cyclase compare
AO353_22920 -2.2 -5.0 GntR family transcriptional regulator compare
AO353_17290 -2.2 -4.7 multidrug transporter compare
AO353_18805 -2.2 -4.9 chemotaxis protein CheY conserved
AO353_28055 -2.1 -2.7 hypothetical protein compare
AO353_01355 -2.1 -6.3 3-oxoacyl-ACP synthase compare
AO353_14230 -2.1 -9.8 ATP-dependent chaperone ClpB conserved
AO353_10055 -2.1 -10.6 DNA helicase II compare
AO353_23425 -2.1 -3.6 3-demethylubiquinone-9 3-methyltransferase compare
AO353_22985 -2.1 -3.0 hypothetical protein compare
AO353_24990 -2.1 -3.0 translation elongation factor compare
AO353_15830 -2.1 -1.8 transcriptional regulator compare
AO353_13580 -2.1 -3.2 copper resistance protein CopZ compare
AO353_10905 -2.1 -8.2 zinc ABC transporter ATP-binding protein conserved
AO353_18815 -2.1 -5.6 flagellar motor protein MotD conserved
AO353_17165 -2.1 -2.5 ATP-dependent helicase compare
AO353_20650 -2.1 -7.5 peptidoglycan-binding protein conserved
AO353_09265 -2.1 -1.8 hypothetical protein compare
AO353_18555 -2.1 -10.7 aromatic amino acid transporter compare
AO353_08115 -2.1 -6.2 energy transducer TonB compare
AO353_10950 -2.0 -9.1 thiol:disulfide interchange protein compare
AO353_13160 -2.0 -2.3 membrane protease HflC compare
AO353_14775 -2.0 -5.9 hypothetical protein compare
AO353_10495 -2.0 -3.1 serine hydroxymethyltransferase compare
AO353_18615 -2.0 -6.0 flagellar biosynthesis protein FlgJ compare
AO353_01410 -2.0 -2.5 ribonuclease E compare
AO353_26385 -2.0 -4.1 hypothetical protein compare
AO353_09320 -2.0 -6.9 ATP-dependent DNA helicase RecG compare
AO353_23285 -2.0 -2.5 hypothetical protein compare
AO353_14370 -2.0 -5.4 glucose-6-phosphate isomerase compare
AO353_12470 -2.0 -11.1 peptidase compare
AO353_19280 -2.0 -1.5 hypothetical protein compare
AO353_09240 -2.0 -1.9 acetylglutamate kinase compare
AO353_00825 -2.0 -3.5 porin compare
AO353_10825 -2.0 -10.0 hypothetical protein compare
AO353_02600 -2.0 -2.2 alpha-ribazole phosphatase compare
AO353_05510 -2.0 -4.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_06710 -1.9 -1.2 riboflavin synthase subunit alpha compare
AO353_17025 -1.9 -9.4 beta-agarase conserved
AO353_16925 -1.9 -9.6 AmpG family muropeptide MFS transporter compare
AO353_23785 -1.9 -1.1 hypothetical protein compare
AO353_02515 -1.9 -6.7 recombination-associated protein RdgC compare
AO353_21055 -1.9 -3.3 glycosyl hydrolase compare
AO353_03615 -1.9 -2.9 cold-shock protein compare
AO353_11455 -1.9 -1.9 hypothetical protein compare
AO353_08685 -1.9 -6.5 N-acetylglutamate synthase compare
AO353_12935 -1.9 -3.1 glycosyltransferase compare
AO353_01780 -1.9 -8.9 heat-shock protein Hsp90 compare
AO353_26865 -1.9 -2.9 transcriptional regulator compare
AO353_26115 -1.9 -1.8 hypothetical protein compare
AO353_27445 -1.9 -3.4 hypothetical protein compare
AO353_00635 -1.9 -2.6 hypothetical protein compare
AO353_07610 -1.9 -0.8 hypothetical protein compare
AO353_05675 -1.9 -5.4 protein RnfH compare
AO353_18540 -1.8 -2.2 pseudouridine synthase compare
AO353_06670 -1.8 -3.3 MFS transporter compare
AO353_04230 -1.8 -3.0 chemotaxis protein CheW compare
AO353_02660 -1.8 -3.6 peptidase P60 compare
AO353_00700 -1.8 -6.0 Cro/Cl family transcriptional regulator compare
AO353_20340 -1.8 -4.1 gamma-carboxygeranoyl-CoA hydratase compare
AO353_00890 -1.8 -4.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_22645 -1.8 -2.1 hypothetical protein compare
AO353_05415 -1.8 -1.9 hypothetical protein compare
AO353_08880 -1.8 -1.7 exopolyphosphatase compare
AO353_05195 -1.8 -7.6 glmZ(sRNA)-inactivating NTPase compare
AO353_06365 -1.8 -7.5 hypothetical protein compare
AO353_01975 -1.8 -7.1 glycosyl transferase compare
AO353_07270 -1.8 -2.4 transcriptional regulator compare
AO353_05420 -1.8 -1.6 peptide chain release factor 3 compare
AO353_17035 -1.8 -4.1 hypothetical protein compare
AO353_08350 -1.8 -5.3 hypothetical protein compare
AO353_17855 -1.8 -2.6 ribonuclease D compare
AO353_16940 -1.8 -4.8 deoxycytidine triphosphate deaminase compare
AO353_15410 -1.8 -1.3 hypothetical protein compare
AO353_06415 -1.8 -3.3 hypothetical protein compare
AO353_08835 -1.7 -6.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_19265 -1.7 -2.9 hypothetical protein compare
AO353_21410 -1.7 -1.6 hypothetical protein compare
AO353_20590 -1.7 -1.9 hydrolase compare
AO353_10430 -1.7 -3.1 chromosome partitioning protein ParB compare


Specific Phenotypes

For 74 genes in this experiment

For motility Agar in Pseudomonas fluorescens FW300-N2E3

For motility Agar across organisms