Experiment set5IT041 for Pseudomonas fluorescens FW300-N2E3

Compare to:

outer cut, LB soft agar motility assay

Genes with specific phenotypes:

  gene name fitness t score description  
AO353_18650 -3.4 -8.8 flagellar export chaperone FliS conserved
AO353_18805 -3.4 -7.2 chemotaxis protein CheY conserved
AO353_18615 -3.2 -10.9 flagellar biosynthesis protein FlgJ compare
AO353_18660 -3.2 -9.7 AAA family ATPase compare
AO353_18665 -3.0 -9.5 histidine kinase conserved
AO353_18605 -3.0 -8.0 flagellar basal body L-ring protein conserved
AO353_18755 -3.0 -7.3 flagellar biosynthetic protein FliR conserved
AO353_18760 -3.0 -8.7 flagellar biosynthetic protein FlhB conserved
AO353_02860 -3.0 -6.6 flagellar biosynthesis protein FlgB compare
AO353_18680 -2.9 -6.5 flagellar M-ring protein FliF conserved
AO353_18625 -2.9 -12.6 flagellar biosynthesis protein FlgL conserved
AO353_18635 -2.9 -10.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_02845 -2.8 -15.7 flagellar biosynthesis protein FlgE conserved
AO353_02875 -2.8 -8.0 flagellar biosynthesis protein FlgA compare
AO353_18815 -2.7 -7.0 flagellar motor protein MotD conserved
AO353_18695 -2.6 -8.7 flagellar protein export ATPase FliI conserved
AO353_18620 -2.6 -15.9 flagellar biosynthesis protein FlgK conserved
AO353_18825 -2.6 -9.3 chemotaxis protein CheW conserved
AO353_18685 -2.5 -7.5 flagellar motor switch protein FliG compare
AO353_18730 -2.5 -6.2 flagellar motor switch protein FliM conserved
AO353_02855 -2.4 -6.0 flagellar basal-body rod protein FlgC compare
AO353_18675 -2.4 -5.3 flagellar hook-basal body protein FliE compare
AO353_18720 -2.4 -8.9 flagellar hook-length control protein conserved
AO353_14230 -2.4 -11.2 ATP-dependent chaperone ClpB conserved
AO353_18670 -2.4 -7.2 Fis family transcriptional regulator conserved
AO353_01305 -2.3 -8.7 hypothetical protein conserved
AO353_18645 -2.3 -12.1 flagellar cap protein FliD conserved
AO353_19270 -2.3 -6.8 LuxR family transcriptional regulator compare
AO353_18770 -2.3 -9.1 flagellar biosynthesis protein FlhA conserved
AO353_12850 -2.3 -12.5 diguanylate cyclase compare
AO353_18785 -2.3 -8.8 flagellar biosynthesis sigma factor conserved
AO353_15560 -2.2 -5.3 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_19285 -2.1 -8.9 chemotaxis protein CheW compare
AO353_18750 -2.1 -5.3 flagellar biosynthetic protein FliQ compare
AO353_18595 -2.1 -5.1 flagellar biosynthesis protein FlgF conserved
AO353_18800 -2.1 -5.5 chemotaxis protein CheA conserved
AO353_18690 -2.0 -5.2 flagellar assembly protein FliH compare
AO353_02865 -2.0 -6.5 chemotaxis protein conserved
AO353_18820 -1.8 -6.3 cobalamin biosynthesis protein CobQ conserved
AO353_04135 -1.8 -5.2 bacterioferritin compare
AO353_10825 -1.8 -9.1 hypothetical protein compare
AO353_27635 -1.8 -5.2 camphor resistance protein CrcB compare
AO353_17025 -1.8 -8.1 beta-agarase conserved
AO353_16415 -1.5 -7.3 beta-(1-3)-glucosyl transferase conserved
AO353_27915 -1.4 -5.3 arginine N-succinyltransferase compare
AO353_10480 -1.4 -6.5 recombinase RecF compare
AO353_11740 -1.4 -6.7 DNA damage response protein (yhgF like) (from data) conserved
AO353_07890 -1.3 -5.6 alginate lyase compare
AO353_17600 -1.2 -5.2 histidine kinase conserved
AO353_12065 +1.1 7.8 MFS transporter compare
AO353_03790 +1.2 6.4 hypothetical protein conserved
AO353_18710 +1.3 9.6 chemotaxis protein CheY conserved
AO353_12095 +1.4 6.1 amino acid ABC transporter substrate-binding protein compare
AO353_00695 +1.5 8.0 diguanylate cyclase conserved
AO353_20380 +1.5 7.3 acyl-CoA dehydrogenase compare
AO353_19640 +1.5 6.4 chemotaxis protein CheY compare
AO353_20465 +1.6 9.3 diguanylate cyclase compare
AO353_12125 +1.7 5.6 glutaredoxin compare
AO353_08805 +1.7 9.9 flagellar basal body protein FliL compare
AO353_08095 +1.7 6.4 protein PilI compare
AO353_08085 +2.0 11.2 histidine kinase conserved
AO353_08090 +2.0 7.9 chemotaxis protein conserved
AO353_11520 +2.1 6.7 diguanylate cyclase compare
AO353_02125 +2.1 8.5 ABC transporter ATP-binding protein compare
AO353_13700 +2.2 15.2 diguanylate cyclase conserved
AO353_20615 +2.3 10.2 LysR family transcriptional regulator compare
AO353_09325 +2.3 11.8 histidine kinase compare
AO353_16035 +2.4 14.6 Lon protease compare
AO353_12140 +2.7 8.1 hypothetical protein conserved
AO353_14025 +2.7 19.4 diguanylate phosphodiesterase compare
AO353_13090 +2.8 16.1 flagellar motor stator protein MotA conserved
AO353_18205 +3.2 11.4 histidine kinase conserved
AO353_15375 +3.3 18.1 deoxyribonuclease conserved
AO353_03965 +3.9 10.4 type IV secretion protein Rhs compare


Specific phenotypes for motility Agar across organisms