Experiment set5IT041 for Pseudomonas fluorescens FW300-N2E3

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
AO353_18790 -4.5 -4.4 histidine kinase compare
AO353_12650 -4.4 -1.2 hypothetical protein compare
AO353_12690 -4.1 -1.1 acyl carrier protein compare
AO353_18600 -4.0 -3.8 flagellar basal-body rod protein FlgG compare
AO353_21625 -3.8 -2.6 Fe/S biogenesis protein NfuA compare
AO353_18830 -3.7 -4.4 chemotaxis protein CheW compare
AO353_00515 -3.7 -3.6 hypothetical protein compare
AO353_00495 -3.6 -2.3 DNA topoisomerase I compare
AO353_02885 -3.6 -2.0 flagellar biosynthesis protein FlgN compare
AO353_02600 -3.5 -3.2 alpha-ribazole phosphatase compare
AO353_10945 -3.5 -2.4 cytochrome C compare
AO353_22685 -3.5 -4.1 peroxidase compare
AO353_18650 -3.4 -8.8 flagellar export chaperone FliS conserved
AO353_18805 -3.4 -7.2 chemotaxis protein CheY conserved
AO353_04365 -3.3 -6.7 recombinase XerD compare
AO353_09315 -3.3 -8.9 LysR family transcriptional regulator compare
AO353_14220 -3.3 -1.7 ribosomal large subunit pseudouridine synthase D compare
AO353_07140 -3.3 -16.5 peptidase M23 compare
AO353_13160 -3.2 -2.2 membrane protease HflC compare
AO353_01685 -3.2 -2.1 hypothetical protein compare
AO353_18615 -3.2 -10.9 flagellar biosynthesis protein FlgJ compare
AO353_02100 -3.2 -3.8 phosphoglycolate phosphatase compare
AO353_18660 -3.2 -9.7 AAA family ATPase compare
AO353_07295 -3.1 -14.4 aminoglycoside phosphotransferase compare
AO353_18775 -3.1 -7.9 flagellar biosynthesis protein FlhF compare
AO353_04500 -3.1 -3.0 DNA repair protein RecO compare
AO353_15250 -3.1 -3.0 cytochrome B compare
AO353_18665 -3.0 -9.5 histidine kinase conserved
AO353_20185 -3.0 -6.7 DNA-binding protein compare
AO353_18605 -3.0 -8.0 flagellar basal body L-ring protein conserved
AO353_18755 -3.0 -7.3 flagellar biosynthetic protein FliR conserved
AO353_27650 -3.0 -5.4 cell division protein FtsK compare
AO353_03590 -3.0 -3.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_06040 -3.0 -2.9 exodeoxyribonuclease V subunit alpha compare
AO353_18760 -3.0 -8.7 flagellar biosynthetic protein FlhB conserved
AO353_14940 -3.0 -3.5 malate:quinone oxidoreductase compare
AO353_02860 -3.0 -6.6 flagellar biosynthesis protein FlgB compare
AO353_17635 -3.0 -10.1 RNA polymerase subunit sigma compare
AO353_10930 -3.0 -6.0 DNA polymerase I compare
AO353_07145 -2.9 -9.4 anhydro-N-acetylmuramic acid kinase compare
AO353_16805 -2.9 -6.8 recombinase RecA compare
AO353_18680 -2.9 -6.5 flagellar M-ring protein FliF conserved
AO353_18625 -2.9 -12.6 flagellar biosynthesis protein FlgL conserved
AO353_03580 -2.9 -2.8 ATP-dependent DNA helicase RuvB compare
AO353_18635 -2.9 -10.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_16810 -2.9 -3.9 recombinase RecX compare
AO353_00650 -2.9 -3.4 cytochrome biogenesis protein compare
AO353_09050 -2.8 -4.3 recombinase XerC compare
AO353_01410 -2.8 -3.9 ribonuclease E compare
AO353_02845 -2.8 -15.7 flagellar biosynthesis protein FlgE conserved
AO353_18425 -2.8 -5.1 hypothetical protein compare
AO353_03795 -2.8 -3.8 fumarate hydratase compare
AO353_02070 -2.8 -7.3 prephenate dehydratase compare
AO353_02875 -2.8 -8.0 flagellar biosynthesis protein FlgA compare
AO353_17640 -2.7 -2.9 serine peptidase compare
AO353_10670 -2.7 -6.1 shikimate dehydrogenase compare
AO353_07075 -2.7 -5.7 elongation factor Tu compare
AO353_18815 -2.7 -7.0 flagellar motor protein MotD conserved
AO353_00455 -2.7 -2.6 beta-hexosaminidase compare
AO353_16710 -2.7 -2.5 hypothetical protein compare
AO353_10780 -2.6 -1.6 DNA-binding protein compare
AO353_18540 -2.6 -1.8 pseudouridine synthase compare
AO353_00170 -2.6 -2.5 lysozyme compare
AO353_09320 -2.6 -9.5 ATP-dependent DNA helicase RecG compare
AO353_18695 -2.6 -8.7 flagellar protein export ATPase FliI conserved
AO353_07290 -2.6 -7.3 mannose-1-phosphate guanylyltransferase compare
AO353_18620 -2.6 -15.9 flagellar biosynthesis protein FlgK conserved
AO353_00750 -2.6 -5.0 GntR family transcriptional regulator compare
AO353_18825 -2.6 -9.3 chemotaxis protein CheW conserved
AO353_02520 -2.5 -2.2 sodium transporter compare
AO353_18745 -2.5 -2.5 flagellar biosynthesis protein flip compare
AO353_14150 -2.5 -1.7 peptidylprolyl isomerase compare
AO353_08880 -2.5 -1.7 exopolyphosphatase compare
AO353_18685 -2.5 -7.5 flagellar motor switch protein FliG compare
AO353_18960 -2.5 -1.8 terminase compare
AO353_04110 -2.5 -4.5 hypothetical protein compare
AO353_18730 -2.5 -6.2 flagellar motor switch protein FliM conserved
AO353_02855 -2.4 -6.0 flagellar basal-body rod protein FlgC compare
AO353_18675 -2.4 -5.3 flagellar hook-basal body protein FliE compare
AO353_15830 -2.4 -2.8 transcriptional regulator compare
AO353_18720 -2.4 -8.9 flagellar hook-length control protein conserved
AO353_14230 -2.4 -11.2 ATP-dependent chaperone ClpB conserved
AO353_11775 -2.4 -7.8 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_25585 -2.4 -2.4 argininosuccinate lyase compare
AO353_14775 -2.4 -6.6 hypothetical protein compare
AO353_26070 -2.4 -2.7 hypothetical protein compare
AO353_18670 -2.4 -7.2 Fis family transcriptional regulator conserved
AO353_12105 -2.4 -5.9 peptidase S41 compare
AO353_01305 -2.3 -8.7 hypothetical protein conserved
AO353_05420 -2.3 -2.0 peptide chain release factor 3 compare
AO353_07355 -2.3 -5.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_05130 -2.3 -1.9 anti-anti-sigma factor compare
AO353_04565 -2.3 -5.6 nucleoid-associated protein compare
AO353_21400 -2.3 -3.1 conjugal transfer protein TraR compare
AO353_18645 -2.3 -12.1 flagellar cap protein FliD conserved
AO353_19270 -2.3 -6.8 LuxR family transcriptional regulator compare
AO353_18770 -2.3 -9.1 flagellar biosynthesis protein FlhA conserved
AO353_20785 -2.3 -6.2 carbon storage regulator CsrA compare
AO353_18610 -2.3 -4.5 flagellar biosynthesis protein FlgI compare
AO353_12850 -2.3 -12.5 diguanylate cyclase compare
AO353_18785 -2.3 -8.8 flagellar biosynthesis sigma factor conserved
AO353_04810 -2.3 -1.6 hypothetical protein compare
AO353_15560 -2.2 -5.3 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_18810 -2.2 -4.5 flagellar motor protein conserved
AO353_20175 -2.2 -3.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_06415 -2.2 -4.7 hypothetical protein compare
AO353_19285 -2.1 -8.9 chemotaxis protein CheW compare
AO353_22215 -2.1 -2.8 hypothetical protein compare
AO353_06850 -2.1 -4.9 MFS transporter compare
AO353_05690 -2.1 -3.5 SsrA-binding protein compare
AO353_22920 -2.1 -5.3 GntR family transcriptional regulator compare
AO353_18750 -2.1 -5.3 flagellar biosynthetic protein FliQ compare
AO353_01975 -2.1 -7.9 glycosyl transferase compare
AO353_10055 -2.1 -10.6 DNA helicase II compare
AO353_07155 -2.1 -6.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07900 -2.1 -2.6 hypothetical protein compare
AO353_18595 -2.1 -5.1 flagellar biosynthesis protein FlgF conserved
AO353_15905 -2.1 -7.7 outer membrane protein assembly factor BamB compare
AO353_18800 -2.1 -5.5 chemotaxis protein CheA conserved
AO353_08115 -2.1 -5.9 energy transducer TonB compare
AO353_08835 -2.1 -9.2 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_06585 -2.1 -5.5 hypothetical protein compare
AO353_08685 -2.0 -7.5 N-acetylglutamate synthase compare
AO353_15185 -2.0 -4.8 ATPase compare
AO353_16925 -2.0 -10.9 AmpG family muropeptide MFS transporter compare
AO353_06455 -2.0 -2.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_11530 -2.0 -7.3 diguanylate cyclase compare
AO353_18700 -2.0 -2.6 flagellar biogenesis protein compare
AO353_06050 -2.0 -6.7 exodeoxyribonuclease V subunit gamma compare
AO353_06045 -2.0 -7.3 exodeoxyribonuclease V subunit beta compare
AO353_16940 -2.0 -5.6 deoxycytidine triphosphate deaminase compare
AO353_18690 -2.0 -5.2 flagellar assembly protein FliH compare
AO353_06720 -2.0 -2.0 NrdR family transcriptional regulator compare
AO353_02865 -2.0 -6.5 chemotaxis protein conserved
AO353_26810 -2.0 -3.9 (2Fe-2S)-binding protein compare
AO353_27855 -1.9 -1.6 MarR family transcriptional regulator compare
AO353_18630 -1.9 -6.5 beta-ketoacyl-ACP synthase compare
AO353_16530 -1.9 -1.5 ribonuclease HII compare
AO353_10950 -1.9 -9.0 thiol:disulfide interchange protein compare
AO353_02250 -1.9 -3.5 chorismate synthase compare
AO353_15170 -1.9 -3.1 cytochrome D ubiquinol oxidase subunit III compare
AO353_11750 -1.9 -2.6 ATPase compare
AO353_18715 -1.9 -1.2 histidine kinase compare
AO353_27090 -1.9 -1.4 hypothetical protein compare
AO353_26595 -1.9 -3.2 copper resistance protein CopD compare
AO353_08350 -1.9 -6.7 hypothetical protein compare
AO353_22855 -1.9 -2.5 hypothetical protein compare
AO353_19290 -1.9 -2.2 molybdenum cofactor sulfurase compare
AO353_17290 -1.9 -4.7 multidrug transporter compare
AO353_29340 -1.9 -2.6 transporter compare
AO353_27720 -1.9 -3.2 cupin compare
AO353_28210 -1.9 -2.6 2-haloalkanoic acid dehalogenase compare
AO353_00185 -1.9 -1.7 phage tail protein compare
AO353_16040 -1.9 -1.8 hypothetical protein compare
AO353_19250 -1.9 -1.9 molybdenum cofactor guanylyltransferase compare
AO353_28055 -1.9 -2.8 hypothetical protein compare
AO353_06365 -1.9 -10.1 hypothetical protein compare
AO353_03710 -1.9 -3.0 formyltetrahydrofolate deformylase compare
AO353_11945 -1.8 -1.0 4-oxalocrotonate tautomerase compare
AO353_06460 -1.8 -5.4 hypothetical protein compare
AO353_10430 -1.8 -3.0 chromosome partitioning protein ParB compare
AO353_18820 -1.8 -6.3 cobalamin biosynthesis protein CobQ conserved
AO353_04135 -1.8 -5.2 bacterioferritin compare
AO353_13130 -1.8 -2.8 N-acetylmuramoyl-L-alanine amidase compare
AO353_03615 -1.8 -3.4 cold-shock protein compare
AO353_02195 -1.8 -4.6 spermidine synthase compare
AO353_04220 -1.8 -4.4 chemotaxis protein CheY compare
AO353_19360 -1.8 -2.0 peroxiredoxin compare
AO353_10825 -1.8 -9.1 hypothetical protein compare
AO353_18485 -1.8 -4.2 nitroreductase compare
AO353_13945 -1.8 -4.5 ubiquinol oxidase subunit II compare
AO353_14400 -1.8 -4.3 Fis family transcriptional regulator compare
AO353_27635 -1.8 -5.2 camphor resistance protein CrcB compare
AO353_21355 -1.8 -1.6 xylose isomerase compare
AO353_07270 -1.8 -3.0 transcriptional regulator compare
AO353_17025 -1.8 -8.1 beta-agarase conserved
AO353_15555 -1.7 -4.1 fumarylacetoacetase compare
AO353_11920 -1.7 -2.0 hypothetical protein compare
AO353_01780 -1.7 -6.8 heat-shock protein Hsp90 compare
AO353_00510 -1.7 -3.8 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_13205 -1.7 -4.8 23S rRNA methyltransferase compare
AO353_11770 -1.7 -1.2 molecular chaperone Hsp33 compare
AO353_08265 -1.7 -5.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_03520 -1.7 -2.0 hypothetical protein compare
AO353_02660 -1.7 -2.8 peptidase P60 compare
AO353_15260 -1.7 -4.0 stringent starvation protein A compare
AO353_21055 -1.7 -3.2 glycosyl hydrolase compare
AO353_05510 -1.7 -4.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_02515 -1.6 -5.6 recombination-associated protein RdgC compare
AO353_20170 -1.6 -4.0 trigger factor compare
AO353_02000 -1.6 -3.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_18555 -1.6 -8.3 aromatic amino acid transporter compare
AO353_20650 -1.6 -4.4 peptidoglycan-binding protein conserved
AO353_29095 -1.6 -4.6 addiction module toxin RelE compare
AO353_00635 -1.6 -2.5 hypothetical protein compare
AO353_06750 -1.6 -4.1 methionine ABC transporter ATP-binding protein compare
AO353_00505 -1.6 -4.3 3-ketoacyl-CoA thiolase compare
AO353_11305 -1.6 -3.6 adenylylsulfate kinase compare
AO353_12115 -1.6 -2.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare


Specific Phenotypes

For 74 genes in this experiment

For motility Agar in Pseudomonas fluorescens FW300-N2E3

For motility Agar across organisms