Experiment set5IT039 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium molybdate 0.25 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4584 -5.5 -3.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3617 -5.3 -3.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5006 -4.8 -8.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3834 -4.7 -7.8 Lipoprotein NlpD compare
Pf6N2E2_5956 -4.6 -4.5 FIG004453: protein YceG like compare
Pf6N2E2_3833 -4.6 -7.0 hypothetical protein compare
Pf6N2E2_2278 -4.5 -16.1 Transcription-repair coupling factor compare
Pf6N2E2_4585 -4.3 -12.5 Cell division protein FtsX compare
Pf6N2E2_773 -4.3 -7.1 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_5150 -4.0 -6.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1087 -3.8 -9.1 Iron siderophore sensor protein compare
Pf6N2E2_2754 -3.8 -4.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_5245 -3.8 -8.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1633 -3.7 -5.0 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_1625 -3.7 -4.3 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3252 -3.6 -7.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2574 -3.5 -2.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_445 -3.4 -7.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3282 -3.3 -2.3 FIG005080: Possible exported protein compare
Pf6N2E2_3253 -3.3 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3665 -3.2 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3842 -3.2 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2753 -3.2 -2.2 HtrA protease/chaperone protein compare
Pf6N2E2_3839 -3.1 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3179 -3.1 -4.5 FIG021952: putative membrane protein compare
Pf6N2E2_156 -3.1 -2.9 Carbon storage regulator compare
Pf6N2E2_5069 -3.0 -6.4 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2825 -2.8 -3.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_1636 -2.8 -9.5 Ferrichrome-iron receptor compare
Pf6N2E2_451 -2.8 -3.8 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3661 -2.8 -4.6 hypothetical protein compare
Pf6N2E2_2824 -2.7 -10.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_1632 -2.7 -5.5 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_3841 -2.6 -5.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5771 -2.6 -7.8 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5342 -2.6 -3.1 21 kDa hemolysin precursor compare
Pf6N2E2_1626 -2.6 -6.9 Putative ATP-binding component of a transport system compare
Pf6N2E2_5001 -2.6 -1.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2586 -2.5 -2.9 Hpt domain protein compare
Pf6N2E2_3610 -2.5 -5.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3521 -2.5 -8.4 Sensor histidine kinase/response regulator compare
Pf6N2E2_3461 -2.5 -2.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2755 -2.5 -1.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4187 -2.5 -4.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3941 -2.4 -3.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5544 -2.4 -7.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_4181 -2.4 -1.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_4153 -2.4 -1.6 Sensory box histidine kinase compare
Pf6N2E2_1984 -2.4 -3.8 probable exported protein STY4558 compare
Pf6N2E2_3460 -2.3 -2.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3791 -2.3 -9.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2506 -2.3 -11.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_1635 -2.3 -4.9 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_2514 -2.3 -5.3 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2311 -2.3 -7.4 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5172 -2.2 -4.2 FOG: TPR repeat compare
Pf6N2E2_2513 -2.2 -4.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3658 -2.2 -5.8 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4556 -2.1 -3.3 FIG00953078: hypothetical protein compare
Pf6N2E2_5068 -2.1 -11.0 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3122 -2.0 -3.1 Chemotaxis signal transduction protein compare
Pf6N2E2_4071 -2.0 -4.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2510 -2.0 -4.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3782 -2.0 -3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1838 -2.0 -3.4 6-hexanolactone hydrolase compare
Pf6N2E2_3301 -2.0 -9.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_5128 -1.9 -3.8 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_2010 -1.9 -1.7 hypothetical protein compare
Pf6N2E2_3792 -1.9 -5.0 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5014 -1.9 -1.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2274 -1.9 -5.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2320 -1.8 -2.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2938 -1.8 -3.6 Outer membrane lipoprotein compare
Pf6N2E2_2313 -1.8 -3.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4454 -1.8 -5.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2823 -1.8 -4.5 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_292 -1.8 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_4803 -1.8 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3251 -1.8 -8.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_855 -1.8 -3.0 Transcriptional regulator, IclR family compare
Pf6N2E2_2714 -1.8 -1.7 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_1056 -1.8 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4416 -1.8 -2.6 Tyrosine recombinase XerC compare
Pf6N2E2_4710 -1.8 -1.8 hypothetical protein compare
Pf6N2E2_819 -1.8 -2.7 Response regulator compare
Pf6N2E2_945 -1.7 -3.0 Transcriptional regulator, TetR family compare
Pf6N2E2_2080 -1.7 -1.8 hypothetical protein compare
Pf6N2E2_1805 -1.7 -3.3 Multidrug resistance protein B compare
Pf6N2E2_5252 -1.7 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_2201 -1.7 -3.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_3285 -1.7 -2.1 Rod shape-determining protein MreD compare
Pf6N2E2_3696 -1.7 -1.2 hypothetical protein compare
Pf6N2E2_4204 -1.7 -1.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2682 -1.6 -2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_1006 -1.6 -3.4 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_5662 -1.6 -6.7 L-Arginine ABC transporter, permease protein AotM (from data) compare
Pf6N2E2_3611 -1.6 -1.4 HflC protein compare
Pf6N2E2_170 -1.6 -2.3 lipoprotein, putative compare
Pf6N2E2_5346 -1.6 -3.1 rRNA small subunit methyltransferase I compare
Pf6N2E2_2317 -1.6 -3.9 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3940 -1.6 -7.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5664 -1.6 -5.2 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_1634 -1.5 -3.5 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_4206 -1.5 -2.0 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_919 -1.5 -2.3 FIG00954373: hypothetical protein compare
Pf6N2E2_2546 -1.5 -3.2 Carbon storage regulator compare
Pf6N2E2_2344 -1.5 -6.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2211 -1.4 -6.2 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_2509 -1.4 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5536 -1.4 -1.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2675 -1.4 -1.2 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4451 -1.4 -5.3 FIG139438: lipoprotein B compare
Pf6N2E2_3243 -1.4 -9.0 FIG067310: hypothetical protein compare
Pf6N2E2_4477 -1.4 -3.2 Z-ring-associated protein ZapA compare
Pf6N2E2_160 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_2181 -1.4 -1.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5780 -1.4 -5.9 Periplasmic protease compare
Pf6N2E2_4636 -1.4 -5.1 periplasmic binding protein, putative compare
Pf6N2E2_4352 -1.4 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3206 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_4601 -1.3 -2.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5316 -1.3 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5794 -1.3 -2.3 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_145 -1.3 -5.4 putative exported protein compare
Pf6N2E2_4045 -1.3 -2.3 FIG00953248: hypothetical protein compare
Pf6N2E2_2261 -1.3 -4.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_5235 -1.3 -5.4 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Pf6N2E2_2582 -1.3 -2.7 Flagellar motor switch protein FliN compare
Pf6N2E2_4146 -1.3 -1.9 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_2507 -1.3 -3.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4996 -1.3 -2.7 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_144 -1.2 -8.5 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4046 -1.2 -9.2 FIG00953482: hypothetical protein compare
Pf6N2E2_2384 -1.2 -2.5 CmpX compare
Pf6N2E2_48 -1.2 -3.0 FIG00955661: hypothetical protein compare
Pf6N2E2_3659 -1.2 -2.9 Protein fixF compare
Pf6N2E2_4993 -1.2 -2.0 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_42 -1.2 -3.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_361 -1.2 -2.1 Peptide ABC transporter, permease protein compare
Pf6N2E2_1825 -1.2 -2.9 FOG: EAL domain protein compare
Pf6N2E2_2152 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_4359 -1.1 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2111 -1.1 -2.6 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_1376 -1.1 -3.1 probable transmembrane protein compare
Pf6N2E2_5733 -1.1 -2.3 NLP/P60 family protein compare
Pf6N2E2_5339 -1.1 -4.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2310 -1.1 -5.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2318 -1.1 -5.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4381 -1.1 -3.8 hypothetical protein compare
Pf6N2E2_4579 -1.1 -1.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_1243 -1.1 -3.6 FIG00953437: hypothetical protein compare
Pf6N2E2_5584 -1.1 -1.6 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_1089 -1.1 -2.1 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1116 -1.1 -0.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2117 -1.1 -7.0 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_3786 -1.1 -2.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_3060 -1.1 -2.7 Outer membrane protein H precursor compare
Pf6N2E2_5640 -1.1 -1.4 FIG00955597: hypothetical protein compare
Pf6N2E2_546 -1.1 -1.5 FIG00966904: hypothetical protein compare
Pf6N2E2_2253 -1.1 -2.9 hypothetical protein compare
Pf6N2E2_3634 -1.1 -1.4 Transporter compare
Pf6N2E2_52 -1.1 -6.6 Excinuclease ABC subunit B compare
Pf6N2E2_5663 -1.1 -1.9 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_344 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_5869 -1.0 -2.2 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_5133 -1.0 -2.3 FIG00953980: hypothetical protein compare
Pf6N2E2_5734 -1.0 -4.8 NLP/P60 family protein compare
Pf6N2E2_2335 -1.0 -3.9 Transcriptional regulator, GntR family compare
Pf6N2E2_865 -1.0 -1.1 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_4499 -1.0 -1.2 protein of unknown function DUF86 compare
Pf6N2E2_2218 -1.0 -2.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4611 -1.0 -2.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3201 -1.0 -2.0 Transcriptional regulator, MerR family compare
Pf6N2E2_5974 -1.0 -2.8 Uncharacterized glutathione S-transferase-like protein compare
Pf6N2E2_5103 -1.0 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5455 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_3783 -1.0 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5605 -1.0 -2.5 FxsA protein compare
Pf6N2E2_2634 -1.0 -5.5 Potassium uptake protein TrkH compare
Pf6N2E2_142 -1.0 -3.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_923 -1.0 -1.5 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_5647 -1.0 -2.9 Transcriptional regulator, TetR family compare
Pf6N2E2_3293 -1.0 -1.7 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_3024 -1.0 -1.2 Phage tail fibers compare
Pf6N2E2_5660 -1.0 -2.8 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare
Pf6N2E2_5862 -1.0 -1.2 Lipoprotein, putative compare
Pf6N2E2_4059 -1.0 -0.9 DNA-binding protein HU-alpha compare
Pf6N2E2_2340 -1.0 -2.5 Transcriptional regulator, GntR family compare
Pf6N2E2_5059 -1.0 -4.6 Transcriptional regulator, TetR family compare
Pf6N2E2_673 -1.0 -1.9 Probable permease of ABC transporter compare
Pf6N2E2_3763 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_737 -0.9 -0.8 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_3373 -0.9 -2.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_1463 -0.9 -1.7 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_4647 -0.9 -6.4 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_5646 -0.9 -0.8 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_40 -0.9 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5160 -0.9 -1.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2885 -0.9 -3.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3260 -0.9 -2.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare


Specific Phenotypes

For 9 genes in this experiment

For stress Sodium molybdate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium molybdate across organisms