Experiment set5IT039 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium molybdate 0.25 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4414 +2.5 12.9 FIG00953808: hypothetical protein compare
Pf6N2E2_4077 +2.0 5.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3062 +1.9 6.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2438 +1.9 4.3 hypothetical protein compare
Pf6N2E2_4152 +1.8 11.1 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_622 +1.8 8.6 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5255 +1.7 13.0 Outer membrane stress sensor protease DegS compare
Pf6N2E2_5703 +1.7 4.1 outer membrane protein H1 compare
Pf6N2E2_3349 +1.6 3.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5865 +1.6 12.7 Chaperone protein HtpG compare
Pf6N2E2_621 +1.6 10.3 TPR domain protein in aerotolerance operon compare
Pf6N2E2_813 +1.5 5.6 Response regulator compare
Pf6N2E2_2727 +1.5 9.5 Ribonuclease D (EC 3.1.26.3) compare
Pf6N2E2_4365 +1.5 8.5 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_4072 +1.5 6.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_624 +1.4 6.4 hypothetical protein PA3071 compare
Pf6N2E2_3198 +1.4 2.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4075 +1.4 6.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2518 +1.4 4.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3283 +1.4 7.2 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_2465 +1.4 8.5 Cys regulon transcriptional activator CysB compare
Pf6N2E2_625 +1.4 5.1 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2605 +1.3 6.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2535 +1.3 5.8 FIG00954136: hypothetical protein compare
Pf6N2E2_4374 +1.3 9.6 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2) compare
Pf6N2E2_3876 +1.3 6.4 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4635 +1.2 6.9 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_620 +1.2 8.1 BatD compare
Pf6N2E2_5704 +1.2 5.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2217 +1.2 4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4415 +1.2 3.3 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_2405 +1.2 6.8 Hypothetical protein PvdY @ Siderophore synthetase small component, acetyltransferase compare
Pf6N2E2_4773 +1.2 1.7 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2436 +1.2 3.3 DNA-binding response regulator, LuxR family compare
Pf6N2E2_4074 +1.2 9.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2394 +1.1 4.3 FIG006220: Hypothetical MbtH-like protein compare
Pf6N2E2_331 +1.1 3.4 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_1504 +1.1 2.7 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_754 +1.1 2.4 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_2200 +1.1 0.9 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5545 +1.1 5.0 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_5720 +1.1 8.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_962 +1.1 2.8 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_2404 +1.1 5.6 Sigma factor PvdS, controling pyoverdin biosynthesis compare
Pf6N2E2_4435 +1.1 7.7 Regulator of sigma D compare
Pf6N2E2_2646 +1.1 2.3 FIG00953416: hypothetical protein compare
Pf6N2E2_822 +1.1 4.5 TPR domain protein compare
Pf6N2E2_3264 +1.0 2.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5406 +1.0 2.9 FIG00958224: hypothetical protein compare
Pf6N2E2_2447 +1.0 5.0 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4057 +1.0 1.0 lipoprotein, putative compare
Pf6N2E2_4063 +1.0 3.0 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_37 +1.0 3.9 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3624 +1.0 5.7 Flagellar motor rotation protein MotB compare
Pf6N2E2_733 +1.0 2.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_647 +1.0 1.8 General secretion pathway protein G compare
Pf6N2E2_2373 +1.0 3.5 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_4150 +1.0 3.3 probable exported protein YPO0432 compare
Pf6N2E2_5084 +1.0 7.1 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_2388 +1.0 4.5 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_2074 +1.0 1.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2474 +1.0 6.6 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5388 +1.0 7.2 GDP-mannose 6-dehydrogenase (EC 1.1.1.132) compare
Pf6N2E2_6047 +1.0 1.5 hypothetical protein compare
Pf6N2E2_3199 +1.0 5.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_1315 +1.0 1.2 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_5382 +1.0 6.8 Alginate biosynthesis protein AlgX compare
Pf6N2E2_2473 +1.0 1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_1014 +1.0 1.2 Nitrate/nitrite transporter compare
Pf6N2E2_3620 +0.9 5.8 Epoxyqueuosine (oQ) reductase QueG compare
Pf6N2E2_2286 +0.9 1.6 FIG00953287: hypothetical protein compare
Pf6N2E2_1932 +0.9 3.4 Transcriptional regulator, IclR family compare
Pf6N2E2_5430 +0.9 5.6 Transglycosylase, Slt family compare
Pf6N2E2_4048 +0.9 5.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_623 +0.9 1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_2381 +0.9 4.0 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5377 +0.9 6.7 Mannose-6-phosphate isomerase (EC 5.3.1.8) / Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) compare
Pf6N2E2_2694 +0.9 5.4 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_2845 +0.9 4.7 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_2973 +0.9 3.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_6063 +0.9 4.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2022 +0.9 3.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_4982 +0.9 3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_5237 +0.8 2.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_6064 +0.8 3.6 2-methylaconitate isomerase compare
Pf6N2E2_525 +0.8 3.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_146 +0.8 2.0 Transcriptional regulator, MarR family compare
Pf6N2E2_831 +0.8 1.9 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_4825 +0.8 4.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_500 +0.8 2.3 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_2630 +0.8 4.1 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
Pf6N2E2_961 +0.8 1.9 FIG00954712: hypothetical protein compare
Pf6N2E2_818 +0.8 3.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5088 +0.8 2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3 +0.8 7.0 Non-ribosomal peptide synthetase modules, pyoverdine compare
Pf6N2E2_3505 +0.8 1.7 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1676 +0.8 2.0 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_5025 +0.8 7.2 Sensor histidine kinase compare
Pf6N2E2_4640 +0.8 1.4 hypothetical protein compare
Pf6N2E2_2386 +0.8 2.4 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_5 +0.8 6.4 Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules compare
Pf6N2E2_5188 +0.8 2.7 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_928 +0.8 1.1 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_1502 +0.8 1.3 Two-component system regulatory protein compare
Pf6N2E2_6075 +0.8 2.2 Chromosome segregation ATPases compare
Pf6N2E2_1136 +0.8 1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_68 +0.8 2.3 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_1040 +0.8 1.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4 +0.8 5.8 Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules compare
Pf6N2E2_5386 +0.7 3.2 Alginate biosynthesis protein Alg44 compare
Pf6N2E2_4168 +0.7 3.4 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_2833 +0.7 2.8 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_71 +0.7 3.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5387 +0.7 4.7 Alginate biosynthesis protein Alg8 compare
Pf6N2E2_2403 +0.7 6.8 Pyoverdine chromophore precursor synthetase PvdL compare
Pf6N2E2_3725 +0.7 1.4 FIG085779: Lipoprotein compare
Pf6N2E2_2106 +0.7 1.6 hypothetical protein compare
Pf6N2E2_5380 +0.7 4.8 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) compare
Pf6N2E2_5546 +0.7 4.1 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_2387 +0.7 2.4 Ribonuclease E inhibitor RraA compare
Pf6N2E2_3077 +0.7 1.9 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_4615 +0.7 1.3 type IV pili signal transduction protein PilI compare
Pf6N2E2_180 +0.7 2.1 Transcriptional regulator, MerR family compare
Pf6N2E2_1683 +0.7 1.3 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_2629 +0.7 4.6 Phenylalanine hydroxylase transcriptional activator PhhR compare
Pf6N2E2_596 +0.7 3.2 Arsenic efflux pump protein compare
Pf6N2E2_5534 +0.7 2.6 FIG000859: hypothetical protein YebC compare
Pf6N2E2_5610 +0.7 3.7 two-component system sensor protein compare
Pf6N2E2_6065 +0.7 1.7 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2003 +0.7 1.4 hypothetical protein compare
Pf6N2E2_3180 +0.7 4.3 Type IV pilus biogenesis protein PilF compare
Pf6N2E2_2936 +0.7 3.6 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_22 +0.7 4.6 L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis compare
Pf6N2E2_3625 +0.7 5.0 Flagellar motor rotation protein MotA compare
Pf6N2E2_5210 +0.7 1.5 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) compare
Pf6N2E2_1972 +0.7 1.1 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_3619 +0.7 3.3 NAD(P)HX epimerase / NAD(P)HX dehydratase compare
Pf6N2E2_6 +0.7 4.8 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) compare
Pf6N2E2_698 +0.7 1.6 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_5153 +0.7 3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_2395 +0.7 2.6 Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf6N2E2_3305 +0.7 1.7 hypothetical protein compare
Pf6N2E2_4907 +0.7 4.6 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_1293 +0.7 0.9 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_1455 +0.7 2.7 Xylose ABC transporter, periplasmic xylose-binding protein XylF compare
Pf6N2E2_3171 +0.7 1.1 hypothetical protein compare
Pf6N2E2_3504 +0.7 4.9 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_1425 +0.7 2.3 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_5379 +0.7 2.8 alginate biosynthesis protein AlgJ compare
Pf6N2E2_9 +0.7 5.5 Pyoverdine sidechain non-ribosomal peptide synthetase PvdD @ Siderophore biosynthesis non-ribosomal peptide synthetase modules compare
Pf6N2E2_4630 +0.7 2.2 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_5378 +0.7 4.3 alginate o-acetyltransferase AlgF compare
Pf6N2E2_5183 +0.7 5.2 Paraquat-inducible protein B compare
Pf6N2E2_4618 +0.7 2.7 Chemotaxis signal transduction protein compare
Pf6N2E2_2988 +0.7 2.9 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_6001 +0.7 3.8 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_1821 +0.7 1.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2472 +0.7 2.3 hypothetical protein compare
Pf6N2E2_460 +0.7 2.3 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_1434 +0.7 1.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_1506 +0.7 1.7 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_2084 +0.7 4.6 sensory box histidine kinase/response regulator compare
Pf6N2E2_2861 +0.6 2.2 hypothetical protein compare
Pf6N2E2_3109 +0.6 4.5 Outer membrane lipoprotein omp16 precursor compare
Pf6N2E2_4679 +0.6 3.7 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf6N2E2_5384 +0.6 3.0 outer membrane protein AlgE compare
Pf6N2E2_168 +0.6 2.4 hypothetical protein compare
Pf6N2E2_15 +0.6 2.2 Pyoverdine biosynthesis related protein PvdP compare
Pf6N2E2_5793 +0.6 3.1 Aspartyl aminopeptidase compare
Pf6N2E2_2219 +0.6 1.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_1536 +0.6 2.1 Permeases of the major facilitator superfamily compare
Pf6N2E2_1238 +0.6 1.5 hypothetical protein compare
Pf6N2E2_1876 +0.6 1.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_481 +0.6 3.3 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) compare
Pf6N2E2_6070 +0.6 1.1 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_5599 +0.6 1.9 Electron transport complex protein RnfA compare
Pf6N2E2_2606 +0.6 3.0 hypothetical protein compare
Pf6N2E2_2195 +0.6 1.6 cI compare
Pf6N2E2_211 +0.6 3.2 SanC compare
Pf6N2E2_3559 +0.6 3.6 Putative heat shock protein YegD compare
Pf6N2E2_5999 +0.6 1.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf6N2E2_4169 +0.6 3.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1530 +0.6 2.4 Flagellar regulatory protein FleQ compare
Pf6N2E2_5182 +0.6 3.1 Paraquat-inducible protein A compare
Pf6N2E2_1631 +0.6 2.9 SyrP-like protein compare
Pf6N2E2_5258 +0.6 3.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5181 +0.6 3.8 Paraquat-inducible protein A compare
Pf6N2E2_715 +0.6 2.2 putative membrane protein compare
Pf6N2E2_3344 +0.6 2.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_3346 +0.6 2.2 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2641 +0.6 2.6 SelT/selW/selH selenoprotein domain compare
Pf6N2E2_5741 +0.6 3.1 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_1288 +0.6 1.2 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_4955 +0.6 2.5 acetyltransferase, GNAT family compare
Pf6N2E2_199 +0.6 1.1 hypothetical protein compare
Pf6N2E2_4992 +0.6 5.0 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf6N2E2_5381 +0.6 2.6 Alginate lyase precursor (EC 4.2.2.3) compare
Pf6N2E2_5705 +0.6 0.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2140 +0.6 2.6 Paraquat-inducible protein A compare
Pf6N2E2_815 +0.6 3.5 Signal transduction histidine kinase compare


Specific Phenotypes

For 9 genes in this experiment

For stress Sodium molybdate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium molybdate across organisms