Experiment set5IT039 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium nitrite nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -4.9 -3.4 3-isopropylmalate dehydratase compare
AO353_12085 -4.6 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07220 -4.6 -7.7 anthranilate synthase compare
AO353_20695 -4.5 -7.5 O-succinylhomoserine sulfhydrylase compare
AO353_13070 -4.5 -9.5 phosphoserine phosphatase compare
AO353_20620 -4.4 -8.8 isopropylmalate isomerase compare
AO353_02075 -4.4 -11.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_05115 -4.3 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07210 -4.3 -5.1 indole-3-glycerol-phosphate synthase compare
AO353_07230 -4.3 -17.4 anthranilate synthase compare
AO353_20635 -4.2 -14.5 3-isopropylmalate dehydrogenase compare
AO353_12070 -4.1 -10.2 imidazoleglycerol-phosphate dehydratase compare
AO353_10670 -4.1 -9.5 shikimate dehydrogenase compare
AO353_12520 -4.1 -13.4 glutamate synthase compare
AO353_16210 -4.0 -14.9 XRE family transcriptional regulator compare
AO353_14505 -3.9 -13.1 ketol-acid reductoisomerase compare
AO353_05110 -3.9 -12.0 histidinol dehydrogenase compare
AO353_12515 -3.8 -24.0 glutamate synthase compare
AO353_08780 -3.8 -9.2 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08185 -3.8 -11.9 methionine biosynthesis protein MetW compare
AO353_00310 -3.8 -11.5 transaldolase compare
AO353_20665 -3.7 -12.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12365 -3.7 -5.6 phosphoribosyl-AMP cyclohydrolase compare
AO353_08510 -3.7 -6.2 3-phosphoglycerate dehydrogenase compare
AO353_12500 -3.6 -2.5 shikimate kinase compare
AO353_12075 -3.6 -10.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_16450 -3.6 -15.2 protein-PII uridylyltransferase compare
AO353_14495 -3.6 -12.3 acetolactate synthase 3 catalytic subunit compare
AO353_14400 -3.6 -4.9 Fis family transcriptional regulator compare
AO353_08475 -3.6 -10.9 phosphoserine phosphatase compare
AO353_02710 -3.5 -13.4 (p)ppGpp synthetase compare
AO353_08345 -3.5 -10.4 dihydroxy-acid dehydratase compare
AO353_02070 -3.5 -8.9 prephenate dehydratase compare
AO353_07215 -3.4 -9.4 anthranilate phosphoribosyltransferase compare
AO353_12150 -3.4 -6.9 histidine kinase compare
AO353_04155 -3.4 -13.7 ornithine carbamoyltransferase compare
AO353_08180 -3.4 -14.6 homoserine O-acetyltransferase compare
AO353_03360 -3.4 -10.2 glucose-6-phosphate dehydrogenase compare
AO353_10030 -3.4 -13.4 pyruvate carboxylase subunit A compare
AO353_07510 -3.3 -12.5 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07515 -3.3 -3.2 transporter compare
AO353_10025 -3.3 -16.8 pyruvate carboxylase subunit B compare
AO353_10035 -3.3 -9.6 LysR family transcriptional regulator compare
AO353_00810 -3.3 -3.7 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_12360 -3.3 -10.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_00495 -3.3 -3.8 DNA topoisomerase I compare
AO353_20540 -3.3 -9.3 aromatic amino acid aminotransferase compare
AO353_09240 -3.2 -2.2 acetylglutamate kinase compare
AO353_07525 -3.2 -16.0 biotin synthase compare
AO353_13165 -3.2 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
AO353_00805 -3.2 -15.0 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
AO353_10710 -3.2 -5.7 tryptophan synthase subunit beta compare
AO353_12090 -3.2 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07505 -3.1 -11.2 dethiobiotin synthetase compare
AO353_14500 -3.1 -8.5 acetolactate synthase 3 regulatory subunit compare
AO353_04105 -3.1 -10.1 argininosuccinate synthase compare
AO353_08685 -3.1 -9.2 N-acetylglutamate synthase compare
AO353_06495 -3.1 -7.6 gamma-glutamyl phosphate reductase compare
AO353_03590 -3.0 -5.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_14115 -3.0 -8.4 gamma-glutamyl kinase compare
AO353_07520 -3.0 -14.3 8-amino-7-oxononanoate synthase compare
AO353_16940 -3.0 -7.1 deoxycytidine triphosphate deaminase compare
AO353_08015 -3.0 -8.7 5,10-methylenetetrahydrofolate reductase compare
AO353_07155 -2.9 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_08045 -2.9 -16.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_14595 -2.9 -11.0 carbonate dehydratase compare
AO353_12145 -2.9 -6.3 nitrogen regulation protein NR(I) compare
AO353_21630 -2.9 -4.3 precorrin-4 C11-methyltransferase compare
AO353_09000 -2.8 -6.4 argininosuccinate lyase compare
AO353_00790 -2.8 -8.0 histidine kinase conserved
AO353_08165 -2.7 -4.2 pyrroline-5-carboxylate reductase compare
AO353_15925 -2.7 -10.8 2-isopropylmalate synthase compare
AO353_08885 -2.6 -15.3 polyphosphate kinase compare
AO353_12115 -2.6 -3.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03415 -2.5 -7.3 glucokinase compare
AO353_00815 -2.5 -13.5 Nitrate reductase (EC 1.7.99.4) (from data) conserved
AO353_02685 -2.4 -5.0 phosphoribosylglycinamide formyltransferase compare
AO353_02720 -2.4 -7.5 cysteine synthase compare
AO353_14150 -2.4 -2.8 peptidylprolyl isomerase compare
AO353_03245 -2.3 -9.5 permease DsdX compare
AO353_14220 -2.3 -2.3 ribosomal large subunit pseudouridine synthase D compare
AO353_03525 -2.3 -10.5 quinolinate synthase A compare
AO353_14420 -2.3 -5.7 molecular chaperone DnaK compare
AO353_00825 -2.3 -5.1 porin compare
AO353_03020 -2.2 -8.9 arginine N-succinyltransferase compare
AO353_22800 -2.0 -3.8 sulfite reductase compare
AO353_00750 -2.0 -5.0 GntR family transcriptional regulator compare
AO353_10705 -2.0 -4.9 tryptophan synthase subunit alpha compare
AO353_04565 -2.0 -6.8 nucleoid-associated protein compare
AO353_21625 -2.0 -2.5 Fe/S biogenesis protein NfuA compare
AO353_03250 -2.0 -2.7 gluconokinase compare
AO353_03420 -2.0 -5.3 phosphogluconate dehydratase compare
AO353_03585 -1.9 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_04355 -1.9 -2.8 homoserine dehydrogenase compare
AO353_06045 -1.9 -7.8 exodeoxyribonuclease V subunit beta compare
AO353_03615 -1.8 -3.8 cold-shock protein compare
AO353_02040 -1.8 -2.9 integration host factor subunit beta compare
AO353_13605 -1.8 -8.2 oxidoreductase compare
AO353_05520 -1.8 -5.6 nicotinate-nucleotide pyrophosphorylase compare
AO353_08620 -1.8 -3.0 hypothetical protein compare
AO353_06050 -1.7 -7.1 exodeoxyribonuclease V subunit gamma compare
AO353_07075 -1.7 -5.3 elongation factor Tu compare
AO353_09040 -1.7 -2.2 diaminopimelate epimerase compare
AO353_14370 -1.7 -6.0 glucose-6-phosphate isomerase compare
AO353_27650 -1.6 -4.8 cell division protein FtsK compare
AO353_03795 -1.6 -4.6 fumarate hydratase compare
AO353_02600 -1.6 -2.2 alpha-ribazole phosphatase compare
AO353_03605 -1.6 -1.8 FmdB family transcriptional regulator compare
AO353_05420 -1.5 -2.0 peptide chain release factor 3 compare
AO353_09285 -1.5 -7.8 reactive intermediate/imine deaminase compare
AO353_07645 -1.5 -1.6 sarcosine oxidase subunit gamma compare
AO353_02250 -1.5 -2.0 chorismate synthase compare
AO353_03775 -1.5 -7.4 pyruvate kinase compare
AO353_13640 -1.5 -3.5 histidine kinase compare
AO353_11850 -1.5 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_10455 -1.4 -1.9 tRNA modification GTPase MnmE compare
AO353_21655 -1.4 -2.7 cobalamin biosynthesis protein CobW compare
AO353_09070 -1.4 -8.8 ammonia channel protein compare
AO353_06040 -1.4 -3.6 exodeoxyribonuclease V subunit alpha compare
AO353_10040 -1.3 -6.4 transcriptional regulator compare
AO353_11165 -1.3 -7.2 hypothetical protein compare
AO353_21660 -1.3 -8.7 cobalamin biosynthesis protein CobN compare
AO353_02595 -1.3 -2.8 cobalamin synthase compare
AO353_12105 -1.3 -5.4 peptidase S41 compare
AO353_03395 -1.3 -5.8 sugar ABC transporter substrate-binding protein compare
AO353_15250 -1.3 -3.4 cytochrome B compare
AO353_08880 -1.3 -2.4 exopolyphosphatase compare
AO353_07445 -1.3 -1.6 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_15185 -1.2 -4.2 ATPase compare
AO353_03410 -1.2 -1.4 chemotaxis protein CheY compare
AO353_02615 -1.2 -5.6 cobyric acid synthase compare
AO353_09890 -1.2 -4.0 phosphate ABC transporter ATP-binding protein compare
AO353_17620 -1.2 -9.5 L-aspartate oxidase compare
AO353_22745 -1.2 -6.8 LysR family transcriptional regulator conserved
AO353_03380 -1.2 -5.1 sugar ABC transporter ATP-binding protein compare
AO353_02625 -1.2 -7.2 cobalamin biosynthesis protein CobD compare
AO353_03390 -1.2 -7.6 sugar ABC transporter permease compare
AO353_01375 -1.2 -4.6 phosphate acyltransferase compare
AO353_13615 -1.2 -8.2 precorrin-2 C20-methyltransferase compare
AO353_07315 -1.2 -2.0 rRNA methyltransferase compare
AO353_02605 -1.2 -5.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_06320 -1.2 -3.0 AsnC family transcriptional regulator compare
AO353_03385 -1.2 -6.1 sugar ABC transporter permease compare
AO353_02005 -1.2 -1.2 hypothetical protein compare
AO353_15830 -1.2 -1.8 transcriptional regulator compare
AO353_05105 -1.2 -6.0 histidinol-phosphate aminotransferase compare
AO353_14405 -1.1 -6.9 ATPase compare
AO353_02635 -1.1 -4.9 cobyrinic acid a,c-diamide synthase compare
AO353_22695 -1.1 -3.8 LysR family transcriptional regulator compare
AO353_06720 -1.1 -1.8 NrdR family transcriptional regulator compare
AO353_14775 -1.1 -4.1 hypothetical protein compare
AO353_01135 -1.1 -2.8 enoyl-CoA hydratase compare
AO353_00785 -1.1 -5.0 nitrate transporter compare
AO353_23220 -1.1 -2.4 hypothetical protein compare
AO353_05690 -1.1 -2.9 SsrA-binding protein compare
AO353_21665 -1.1 -3.2 magnesium chelatase compare
AO353_13620 -1.1 -6.1 precorrin-3B C17-methyltransferase compare
AO353_13600 -1.1 -2.9 precorrin-6Y C5,15-methyltransferase compare
AO353_24255 -1.1 -3.1 hypothetical protein compare
AO353_25585 -1.1 -2.4 argininosuccinate lyase compare
AO353_13200 -1.1 -6.7 exoribonuclease R compare
AO353_07355 -1.0 -4.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_20170 -1.0 -3.3 trigger factor compare
AO353_26830 -1.0 -3.6 histidine kinase compare
AO353_23405 -1.0 -2.1 hypothetical protein compare
AO353_08485 -1.0 -7.2 threonine dehydratase compare
AO353_21635 -1.0 -3.7 cobalamin biosynthesis protein CobE compare
AO353_09260 -1.0 -4.9 ribonuclease PH compare
AO353_13610 -1.0 -2.4 precorrin isomerase compare
AO353_19360 -1.0 -2.4 peroxiredoxin compare
AO353_19145 -1.0 -3.4 protease HtpX compare
AO353_02640 -1.0 -1.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_27585 -1.0 -1.5 DNA repair protein compare
AO353_15170 -1.0 -1.9 cytochrome D ubiquinol oxidase subunit III compare
AO353_18540 -1.0 -2.1 pseudouridine synthase compare
AO353_29000 -1.0 -3.0 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_11730 -0.9 -5.6 glutamate--cysteine ligase compare
AO353_15725 -0.9 -3.0 hypothetical protein compare
AO353_25220 -0.9 -2.6 hypothetical protein compare
AO353_18325 -0.9 -1.9 hypothetical protein compare
AO353_27550 -0.9 -1.7 hypothetical protein compare
AO353_00460 -0.9 -2.2 TetR family transcriptional regulator compare
AO353_13590 -0.9 -3.3 cobalt-precorrin-6X reductase compare
AO353_13245 -0.9 -4.3 hypothetical protein compare
AO353_04175 -0.9 -3.2 glycerol uptake facilitator GlpF compare
AO353_12420 -0.9 -2.2 predicted FeS cluster maintenance protein (from data) compare
AO353_13140 -0.9 -3.4 tRNA dimethylallyltransferase compare
AO353_17205 -0.9 -2.2 beta-ketoadipyl CoA thiolase compare
AO353_02000 -0.9 -2.1 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_19060 -0.9 -3.4 CysB family transcriptional regulator compare
AO353_21100 -0.9 -1.6 DNA-binding protein compare
AO353_01780 -0.9 -5.1 heat-shock protein Hsp90 compare
AO353_19810 -0.9 -2.4 filamentous hemagglutinin compare
AO353_02220 -0.9 -1.4 hypothetical protein compare
AO353_01190 -0.9 -1.0 hypothetical protein compare
AO353_03670 -0.8 -3.3 ornithine acetyltransferase compare
AO353_04365 -0.8 -3.1 recombinase XerD compare
AO353_08115 -0.8 -3.8 energy transducer TonB compare
AO353_20270 -0.8 -2.2 spore coat protein compare
AO353_04240 -0.8 -1.4 chemotaxis protein CheW compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Sodium nitrite across organisms