Experiment set5IT039 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium nitrite nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
AO353_21830 +1.7 14.5 chemotaxis protein CheY compare
AO353_02735 +1.6 14.8 chemotaxis protein CheY compare
AO353_07610 +1.5 4.0 hypothetical protein compare
AO353_07105 +1.3 2.9 biotin--protein ligase compare
AO353_26100 +1.2 3.2 lysozyme compare
AO353_11190 +1.1 8.5 ABC transporter compare
AO353_11185 +1.0 8.9 channel protein TolC compare
AO353_11180 +1.0 9.5 large adhesive protein compare
AO353_06710 +1.0 1.9 riboflavin synthase subunit alpha compare
AO353_19340 +1.0 8.3 amino acid ABC transporter substrate-binding protein compare
AO353_23400 +0.9 3.1 hypothetical protein compare
AO353_11340 +0.9 1.5 MarR family transcriptional regulator compare
AO353_00760 +0.9 2.9 hypothetical protein compare
AO353_11195 +0.9 7.9 hemolysin secretion protein D compare
AO353_12690 +0.9 1.4 acyl carrier protein compare
AO353_11170 +0.8 6.8 hypothetical protein compare
AO353_27500 +0.8 2.3 hypothetical protein compare
AO353_15665 +0.8 3.1 chemotaxis protein CheY compare
AO353_09945 +0.8 3.5 LysR family transcriptional regulator compare
AO353_00185 +0.8 1.7 phage tail protein compare
AO353_10990 +0.8 5.7 glutamate:protein symporter compare
AO353_09060 +0.8 2.4 hypothetical protein compare
AO353_13585 +0.8 3.2 predicted copper homeostasis protein (from data) compare
AO353_16615 +0.8 6.5 RNA polymerase sigma factor RpoS compare
AO353_26055 +0.8 1.9 hypothetical protein compare
AO353_14590 +0.8 2.2 serine kinase/phosphatase compare
AO353_25925 +0.8 1.5 hypothetical protein compare
AO353_26525 +0.7 1.3 hypothetical protein compare
AO353_06275 +0.7 2.2 DNA polymerase III subunit epsilon compare
AO353_14990 +0.7 1.5 hypothetical protein compare
AO353_23415 +0.7 3.8 lysine transporter LysE compare
AO353_19070 +0.7 2.1 hypothetical protein compare
AO353_15490 +0.7 1.6 hypothetical protein compare
AO353_16530 +0.7 1.3 ribonuclease HII compare
AO353_19605 +0.7 1.3 hypothetical protein compare
AO353_02480 +0.7 4.7 peptidylprolyl isomerase compare
AO353_04190 +0.7 1.5 glycerol-3-phosphate dehydrogenase compare
AO353_23335 +0.6 2.5 MATE family efflux transporter compare
AO353_23165 +0.6 2.1 cupin compare
AO353_01705 +0.6 2.9 alpha/beta hydrolase compare
AO353_20410 +0.6 2.0 hypothetical protein compare
AO353_16055 +0.6 2.0 hypothetical protein compare
AO353_27890 +0.6 2.9 RpiR family transcriptional regulator compare
AO353_09250 +0.6 1.9 exodeoxyribonuclease III compare
AO353_11155 +0.6 5.0 thioesterase compare
AO353_17850 +0.6 2.0 SAM-dependent methyltransferase compare
AO353_13300 +0.6 1.3 LOG family protein compare
AO353_21410 +0.6 1.5 hypothetical protein compare
AO353_29005 +0.6 1.9 hypothetical protein compare
AO353_26115 +0.6 1.1 hypothetical protein compare
AO353_12540 +0.6 2.2 hypothetical protein compare
AO353_04800 +0.6 1.9 short-chain dehydrogenase compare
AO353_02175 +0.6 1.9 carbon storage regulator compare
AO353_29365 +0.6 1.7 paraquat-inducible protein A compare
AO353_13050 +0.5 2.3 DNA topoisomerase IV compare
AO353_28015 +0.5 1.6 hypothetical protein compare
AO353_25820 +0.5 2.8 hypothetical protein compare
AO353_08645 +0.5 1.1 transporter compare
AO353_22985 +0.5 1.5 hypothetical protein compare
AO353_21180 +0.5 2.6 transposase compare
AO353_02570 +0.5 1.3 hypothetical protein compare
AO353_13480 +0.5 3.1 chaperone modulatory protein CbpM compare
AO353_04810 +0.5 0.9 hypothetical protein compare
AO353_04035 +0.5 1.7 exclusion suppressor FxsA compare
AO353_03860 +0.5 2.6 aldehyde dehydrogenase compare
AO353_12565 +0.5 1.0 type II secretion system protein GspH compare
AO353_05280 +0.5 1.7 4-carboxymuconolactone decarboxylase compare
AO353_07850 +0.5 2.3 ATP-dependent RNA helicase compare
AO353_08440 +0.5 1.3 hypothetical protein compare
AO353_09440 +0.5 1.4 type VI secretion protein compare
AO353_23910 +0.5 1.8 response regulator compare
AO353_21935 +0.5 1.0 nitrite reductase compare
AO353_26260 +0.5 2.5 hypothetical protein compare
AO353_24175 +0.5 1.7 hypothetical protein compare
AO353_24595 +0.5 1.2 hypothetical protein compare
AO353_28815 +0.5 1.2 hypothetical protein compare
AO353_28960 +0.5 1.5 Fis family transcriptional regulator compare
AO353_23930 +0.5 1.9 chemotaxis protein CheY compare
AO353_26390 +0.5 1.3 glyoxalase compare
AO353_03520 +0.5 1.6 hypothetical protein compare
AO353_02465 +0.5 1.2 hypothetical protein compare
AO353_26310 +0.5 2.5 hypothetical protein compare
AO353_15565 +0.5 2.2 hypothetical protein compare
AO353_20765 +0.5 2.1 NADPH-dependent FMN reductase compare
AO353_24260 +0.5 0.8 hypothetical protein compare
AO353_25305 +0.5 1.9 malonate transporter compare
AO353_13660 +0.5 2.6 tRNA-dihydrouridine synthase B compare
AO353_20980 +0.5 2.1 hypothetical protein compare
AO353_01105 +0.5 2.3 hypothetical protein compare
AO353_13580 +0.5 1.5 copper resistance protein CopZ compare
AO353_14635 +0.5 2.3 cupin compare
AO353_25315 +0.5 1.6 malonate decarboxylase subunit epsilon compare
AO353_19685 +0.5 2.0 alkylhydroperoxidase compare
AO353_28850 +0.5 2.5 LysR family transcriptional regulator compare
AO353_03330 +0.5 1.9 aldehyde dehydrogenase compare
AO353_29280 +0.5 1.3 hypothetical protein compare
AO353_18655 +0.5 1.5 flagellar assembly protein FliT compare
AO353_09030 +0.5 1.0 iron donor protein CyaY compare
AO353_07875 +0.4 1.4 hypothetical protein compare
AO353_08865 +0.4 2.0 ABC transporter permease compare
AO353_15585 +0.4 2.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_24200 +0.4 1.9 serine--tRNA ligase compare
AO353_00385 +0.4 2.0 glycerophosphodiester phosphodiesterase compare
AO353_09265 +0.4 1.0 hypothetical protein compare
AO353_27215 +0.4 1.2 hypothetical protein compare
AO353_02225 +0.4 1.4 LuxR family transcriptional regulator compare
AO353_02815 +0.4 2.0 transcriptional regulator compare
AO353_22520 +0.4 1.3 hypothetical protein compare
AO353_22580 +0.4 1.8 3-demethylubiquinone-9 3-methyltransferase compare
AO353_10780 +0.4 0.9 DNA-binding protein compare
AO353_01325 +0.4 1.8 hydrolase TatD compare
AO353_15560 +0.4 2.2 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_03125 +0.4 2.0 LysR family transcriptional regulator compare
AO353_20495 +0.4 1.1 NUDIX hydrolase compare
AO353_24275 +0.4 1.0 transcriptional regulator compare
AO353_12915 +0.4 2.9 carbamoyltransferase compare
AO353_20065 +0.4 2.0 hypothetical protein compare
AO353_03175 +0.4 2.0 hypothetical protein compare
AO353_00455 +0.4 1.4 beta-hexosaminidase compare
AO353_03010 +0.4 2.1 succinylglutamate-semialdehyde dehydrogenase compare
AO353_12935 +0.4 1.6 glycosyltransferase compare
AO353_21825 +0.4 2.4 GNAT family acetyltransferase compare
AO353_11945 +0.4 0.8 4-oxalocrotonate tautomerase compare
AO353_21380 +0.4 1.8 rhizopine-binding protein compare
AO353_13130 +0.4 1.3 N-acetylmuramoyl-L-alanine amidase compare
AO353_22850 +0.4 1.7 hypothetical protein compare
AO353_03820 +0.4 1.7 Asp/Glu/hydantoin racemase compare
AO353_20480 +0.4 1.8 hypothetical protein compare
AO353_28385 +0.4 2.0 twitching motility protein PilT compare
AO353_03140 +0.4 1.9 hypothetical protein compare
AO353_12720 +0.4 1.7 hypothetical protein compare
AO353_17300 +0.4 2.2 antibiotic transporter compare
AO353_27050 +0.4 2.0 hypothetical protein compare
AO353_18925 +0.4 1.4 ATPase compare
AO353_21400 +0.4 1.2 conjugal transfer protein TraR compare
AO353_08040 +0.4 2.6 cytochrome B compare
AO353_20285 +0.4 2.3 molecular chaperone compare
AO353_01595 +0.4 1.3 Flp pilus assembly protein CpaB compare
AO353_06345 +0.4 3.8 histidine kinase compare
AO353_20800 +0.4 0.6 hypothetical protein compare
AO353_09660 +0.4 0.5 hypothetical protein compare
AO353_09835 +0.4 1.8 rubredoxin compare
AO353_12625 +0.4 1.6 hypothetical protein compare
AO353_01725 +0.4 1.2 phosphohistidine phosphatase compare
AO353_19335 +0.4 2.8 TetR family transcriptional regulator compare
AO353_05490 +0.4 2.0 transcriptional regulator compare
AO353_12575 +0.4 1.6 type II secretion system protein GspJ compare
AO353_08380 +0.4 1.7 GTPase SAR1 compare
AO353_18630 +0.4 2.3 beta-ketoacyl-ACP synthase compare
AO353_27435 +0.4 1.0 hypothetical protein compare
AO353_04230 +0.4 1.7 chemotaxis protein CheW compare
AO353_19750 +0.4 0.9 diaminopimelate epimerase compare
AO353_08435 +0.4 1.0 phosphatidylglycerophosphatase compare
AO353_21895 +0.4 1.4 molybdenum cofactor biosynthesis protein MoaD compare
AO353_27935 +0.4 1.2 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_22250 +0.4 1.9 NADPH-dependent FMN reductase compare
AO353_25050 +0.4 1.8 AraC family transcriptional regulator compare
AO353_07625 +0.4 1.3 RNA polymerase subunit sigma-70 compare
AO353_00105 +0.4 1.1 hypothetical protein compare
AO353_13505 +0.4 2.2 acetyltransferase compare
AO353_09875 +0.4 1.0 hypothetical protein compare
AO353_01885 +0.4 2.4 hypothetical protein compare
AO353_23270 +0.4 1.4 hypothetical protein compare
AO353_07915 +0.4 1.5 hypothetical protein compare
AO353_03230 +0.4 1.7 lysine transporter LysE compare
AO353_22960 +0.4 2.0 transcriptional regulator compare
AO353_18585 +0.4 2.6 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
AO353_19310 +0.4 0.8 enoyl-CoA hydratase compare
AO353_06100 +0.4 1.0 thymidylate synthase compare
AO353_19575 +0.4 1.8 dimethylglycine dehydrogenase compare
AO353_12140 +0.4 1.7 hypothetical protein compare
AO353_10085 +0.4 1.0 pyridoxamine kinase compare
AO353_12895 +0.4 1.6 lipopolysaccharide kinase compare
AO353_00275 +0.4 2.5 hypothetical protein compare
AO353_25660 +0.4 1.2 ABC transporter substrate-binding protein compare
AO353_20300 +0.4 2.4 anti-sigma factor compare
AO353_20870 +0.4 2.1 hypothetical protein compare
AO353_06540 +0.4 1.0 hypothetical protein compare
AO353_17025 +0.4 3.0 beta-agarase compare
AO353_07770 +0.4 1.7 AraC family transcriptional regulator compare
AO353_23465 +0.4 1.9 ABC transporter permease compare
AO353_00610 +0.4 0.7 cytochrome C oxidase Cbb3 compare
AO353_25720 +0.4 1.3 peroxidase compare
AO353_16725 +0.4 1.7 hypothetical protein compare
AO353_02150 +0.4 1.4 fumarate hydratase compare
AO353_15930 +0.4 2.1 peptidase M23 compare
AO353_19580 +0.4 1.0 AraC family transcriptional regulator compare
AO353_09570 +0.4 2.1 type VI secretion protein ImpA compare
AO353_25680 +0.4 1.8 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) compare
AO353_00250 +0.4 1.0 hypothetical protein compare
AO353_12460 +0.4 2.3 malate dehydrogenase compare
AO353_12535 +0.4 1.5 hypothetical protein compare
AO353_21780 +0.4 1.3 Fis family transcriptional regulator compare
AO353_14925 +0.4 1.5 hydroxyproline-2-epimerase compare
AO353_22020 +0.4 2.2 hypothetical protein compare
AO353_28930 +0.4 0.8 hypothetical protein compare
AO353_09135 +0.4 0.5 cytochrome C compare
AO353_09405 +0.4 1.5 type VI secretion protein compare
AO353_00590 +0.4 1.3 cytochrome C oxidase Cbb3 compare
AO353_26450 +0.3 1.5 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Sodium nitrite across organisms