Experiment set5IT039 for Pseudomonas fluorescens SBW25-INTG

Compare to:

N-Acetyl-D-Glucosamine carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.3 -4.4 tetratricopeptide repeat protein compare
PFLU_RS01645 -6.1 -4.2 S41 family peptidase compare
PFLU_RS04385 -5.6 -5.4 RNase adapter RapZ compare
PFLU_RS28645 -5.4 -17.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS07650 -5.4 -8.3 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS01605 -5.2 -6.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27365 -5.1 -7.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS24655 -5.1 -7.8 phosphoenolpyruvate--protein phosphotransferase conserved
PFLU_RS27620 -5.1 -19.9 acyl-CoA dehydrogenase compare
PFLU_RS04465 -5.1 -6.0 ATP phosphoribosyltransferase compare
PFLU_RS29875 -5.0 -9.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS29885 -5.0 -9.5 LysR family transcriptional regulator compare
PFLU_RS22095 -4.9 -12.0 GTP diphosphokinase compare
PFLU_RS02365 -4.9 -11.0 glycosyltransferase compare
PFLU_RS24650 -4.9 -10.4 SIS domain-containing protein conserved
PFLU_RS24645 -4.9 -9.9 N-acetylglucosamine-6-phosphate deacetylase conserved
PFLU_RS28535 -4.9 -11.3 dihydroxy-acid dehydratase compare
PFLU_RS04660 -4.8 -3.3 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS20580 -4.8 -10.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS23680 -4.8 -18.4 long-chain fatty acid--CoA ligase compare
PFLU_RS29095 -4.8 -30.2 polyphosphate kinase 1 compare
PFLU_RS25640 -4.7 -6.5 ketol-acid reductoisomerase compare
PFLU_RS26545 -4.7 -15.1 sel1 repeat family protein compare
PFLU_RS28695 -4.7 -7.2 phosphoglycerate dehydrogenase compare
PFLU_RS29880 -4.7 -12.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS24660 -4.7 -12.5 PTS transporter subunit IIBC conserved
PFLU_RS11525 -4.7 -3.2 GntR family transcriptional regulator compare
PFLU_RS27440 -4.7 -4.6 nucleotidyltransferase family protein compare
PFLU_RS27370 -4.6 -10.2 anthranilate phosphoribosyltransferase compare
PFLU_RS28385 -4.6 -12.1 homoserine O-acetyltransferase compare
PFLU_RS10325 -4.5 -8.7 MFS transporter compare
PFLU_RS20565 -4.5 -11.6 3-isopropylmalate dehydrogenase compare
PFLU_RS08065 -4.5 -8.1 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS24765 -4.4 -19.8 2-isopropylmalate synthase compare
PFLU_RS14550 -4.4 -10.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS25760 -4.4 -11.7 glucose-6-phosphate isomerase compare
PFLU_RS00180 -4.3 -5.9 tryptophan synthase subunit beta compare
PFLU_RS20575 -4.3 -6.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28165 -4.3 -9.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS24125 -4.3 -3.0 cold-shock protein compare
PFLU_RS28390 -4.2 -11.9 methionine biosynthesis protein MetW compare
PFLU_RS21300 -4.2 -7.6 cysteine hydrolase compare
PFLU_RS22105 -4.2 -2.9 cysteine synthase CysM compare
PFLU_RS04470 -4.2 -10.4 histidinol dehydrogenase compare
PFLU_RS26735 -4.1 -11.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS07655 -4.1 -7.3 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS20540 -4.1 -11.7 phosphoribosylanthranilate isomerase compare
PFLU_RS04715 -4.1 -7.7 D-alanine--D-alanine ligase compare
PFLU_RS02490 -4.1 -14.1 phosphoserine phosphatase SerB compare
PFLU_RS01620 -4.0 -9.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS25360 -4.0 -7.7 glutamate 5-kinase compare
PFLU_RS25750 -4.0 -6.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS03970 -3.9 -12.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS01320 -3.9 -6.5 phosphoenolpyruvate carboxykinase compare
PFLU_RS25735 -3.9 -3.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04220 -3.9 -7.4 FadR family transcriptional regulator compare
PFLU_RS18505 -3.9 -9.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS22835 -3.9 -10.8 amidotransferase compare
PFLU_RS22740 -3.8 -5.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS22195 -3.8 -4.5 DEAD/DEAH box helicase compare
PFLU_RS02590 -3.8 -10.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25755 -3.8 -2.6 pantoate--beta-alanine ligase compare
PFLU_RS23725 -3.7 -13.9 glucose-6-phosphate dehydrogenase compare
PFLU_RS01610 -3.7 -13.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS12980 -3.7 -9.8 nitrite/sulfite reductase compare
PFLU_RS26020 -3.7 -12.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS22595 -3.7 -2.6 OmpA family protein compare
PFLU_RS20510 -3.7 -14.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS18940 -3.7 -11.0 acyl-CoA dehydrogenase compare
PFLU_RS28965 -3.7 -11.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS01625 -3.6 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS07695 -3.6 -4.9 beta-N-acetylhexosaminidase compare
PFLU_RS01900 -3.6 -9.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS02370 -3.6 -13.3 glycosyltransferase compare
PFLU_RS00175 -3.6 -8.0 tryptophan synthase subunit alpha compare
PFLU_RS28650 -3.6 -9.2 RNA pyrophosphohydrolase compare
PFLU_RS03770 -3.5 -15.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS08505 -3.5 -8.5 protease HtpX compare
PFLU_RS03980 -3.5 -9.6 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS04070 -3.5 -5.3 peptide chain release factor 3 compare
PFLU_RS14820 -3.5 -5.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS01895 -3.5 -8.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS12975 -3.4 -6.8 DUF934 domain-containing protein compare
PFLU_RS19165 -3.4 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS15410 -3.4 -2.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS26770 -3.4 -14.6 DedA family protein compare
PFLU_RS08155 -3.3 -2.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS21965 -3.3 -16.5 transporter compare
PFLU_RS28655 -3.3 -14.6 HAD family hydrolase compare
PFLU_RS23305 -3.3 -12.5 arginine N-succinyltransferase compare
PFLU_RS24025 -3.3 -13.0 quinolinate synthase NadA compare
PFLU_RS22070 -3.3 -6.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS09055 -3.3 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS25730 -3.3 -19.3 PAS domain S-box protein compare
PFLU_RS27305 -3.3 -9.3 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS29215 -3.3 -14.4 response regulator transcription factor compare
PFLU_RS22630 -3.3 -20.1 phosphoenolpyruvate synthase compare
PFLU_RS21060 -3.2 -5.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS29735 -3.2 -12.8 HlyC/CorC family transporter compare
PFLU_RS04315 -3.2 -4.8 rod shape-determining protein MreD compare
PFLU_RS14810 -3.2 -3.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS18530 -3.2 -4.8 DNA translocase FtsK compare
PFLU_RS27445 -3.2 -17.0 phosphotransferase compare
PFLU_RS03765 -3.2 -12.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS30345 -3.2 -3.1 DUF2559 family protein compare
PFLU_RS12580 -3.2 -10.2 MurR/RpiR family transcriptional regulator compare
PFLU_RS24790 -3.1 -6.6 tetratricopeptide repeat protein compare
PFLU_RS07785 -3.1 -11.2 VacJ family lipoprotein compare
PFLU_RS24485 -3.1 -12.3 hypothetical protein compare
PFLU_RS23310 -3.1 -10.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS13485 -3.1 -17.4 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS18645 -3.0 -2.1 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS22645 -3.0 -16.0 EamA family transporter compare
PFLU_RS21495 -3.0 -2.9 TlpA family protein disulfide reductase compare
PFLU_RS19550 -3.0 -1.5 ABC transporter ATP-binding protein compare
PFLU_RS04435 -3.0 -8.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS26905 -2.9 -12.2 transcriptional regulator NrdR compare
PFLU_RS25715 -2.9 -12.4 RNA polymerase-binding protein DksA compare
PFLU_RS07805 -2.9 -18.9 transaldolase compare
PFLU_RS20515 -2.9 -2.0 amidophosphoribosyltransferase compare
PFLU_RS25225 -2.9 -12.1 disulfide bond formation protein B compare
PFLU_RS28310 -2.8 -2.7 response regulator compare
PFLU_RS01965 -2.8 -1.9 ATP-dependent protease subunit HslV compare
PFLU_RS18640 -2.8 -1.9 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS18395 -2.8 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS18625 -2.8 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS25815 -2.8 -2.2 transcription termination/antitermination protein NusA compare
PFLU_RS06055 -2.7 -1.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS09980 -2.7 -16.8 peptidase S41 compare
PFLU_RS23355 -2.7 -23.6 acetate--CoA ligase compare
PFLU_RS04325 -2.7 -16.9 ribonuclease G compare
PFLU_RS24335 -2.7 -14.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS18615 -2.7 -2.5 NADH-quinone oxidoreductase subunit A compare
PFLU_RS19170 -2.7 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS17545 -2.7 -1.9 DUF465 domain-containing protein compare
PFLU_RS24785 -2.7 -13.1 outer membrane protein assembly factor BamB compare
PFLU_RS00415 -2.6 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS13540 -2.6 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS29785 -2.6 -16.1 D-hexose-6-phosphate mutarotase conserved
PFLU_RS18655 -2.6 -1.7 NADH-quinone oxidoreductase subunit J compare
PFLU_RS26640 -2.6 -13.3 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS28690 -2.6 -14.2 FAD-binding oxidoreductase compare
PFLU_RS24330 -2.6 -7.7 phosphogluconate dehydratase compare
PFLU_RS19175 -2.5 -10.4 trigger factor compare
PFLU_RS07640 -2.5 -10.7 universal stress protein compare
PFLU_RS30165 -2.5 -9.8 ParA family protein compare
PFLU_RS28725 -2.5 -12.4 DUF2059 domain-containing protein compare
PFLU_RS18670 -2.5 -1.7 NADH-quinone oxidoreductase subunit M compare
PFLU_RS24640 -2.4 -8.1 GntR family transcriptional regulator conserved
PFLU_RS18635 -2.4 -2.3 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS15610 -2.4 -6.3 helix-turn-helix transcriptional regulator compare
PFLU_RS18620 -2.4 -3.6 NADH-quinone oxidoreductase subunit B compare
PFLU_RS19160 -2.4 -12.5 endopeptidase La compare
PFLU_RS09575 -2.4 -6.4 FadR family transcriptional regulator compare
PFLU_RS24085 -2.4 -3.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS21665 -2.4 -7.8 MinD/ParA family protein compare
PFLU_RS04440 -2.4 -10.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS27685 -2.3 -13.5 malate synthase G compare
PFLU_RS07970 -2.3 -12.9 LOG family protein compare
PFLU_RS26595 -2.3 -1.6 lipoprotein compare
PFLU_RS27650 -2.3 -13.5 biotin synthase BioB compare
PFLU_RS24095 -2.3 -2.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS14775 -2.3 -2.3 enoyl-CoA hydratase compare
PFLU_RS29310 -2.3 -1.7 accessory factor UbiK family protein compare
PFLU_RS22725 -2.3 -3.5 transcriptional regulator compare
PFLU_RS04430 -2.3 -9.5 ATP-binding cassette domain-containing protein compare
PFLU_RS24805 -2.2 -6.0 helix-turn-helix domain-containing protein compare
PFLU_RS18665 -2.2 -3.0 NADH-quinone oxidoreductase subunit L compare
PFLU_RS12660 -2.2 -7.4 hypothetical protein compare
PFLU_RS13475 -2.2 -12.8 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS16935 -2.2 -4.2 CoA ester lyase compare
PFLU_RS28785 -2.2 -11.4 glutamine synthetase compare
PFLU_RS15065 -2.2 -5.8 IclR family transcriptional regulator compare
PFLU_RS20625 -2.2 -3.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS27475 -2.2 -4.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS08160 -2.1 -9.1 sugar transferase compare
PFLU_RS02460 -2.1 -10.8 alpha/beta fold hydrolase compare
PFLU_RS18550 -2.1 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS27465 -2.1 -3.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS18610 -2.1 -12.5 isocitrate lyase compare
PFLU_RS05250 -2.1 -5.5 elongation factor 4 compare
PFLU_RS23920 -2.0 -2.7 septation protein A compare
PFLU_RS25305 -2.0 -8.9 dihydromonapterin reductase compare
PFLU_RS06555 -2.0 -9.1 OmpA family protein compare
PFLU_RS18675 -2.0 -1.4 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS02280 -2.0 -10.5 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS24000 -2.0 -13.9 aminomethyl-transferring glycine dehydrogenase compare
PFLU_RS24090 -2.0 -3.0 Holliday junction branch migration protein RuvA compare
PFLU_RS07225 -2.0 -13.0 L-aspartate oxidase compare
PFLU_RS06320 -2.0 -3.8 OmpH family outer membrane protein compare
PFLU_RS25645 -2.0 -1.3 acetolactate synthase small subunit compare
PFLU_RS30160 -2.0 -3.5 ParB/RepB/Spo0J family partition protein compare
PFLU_RS25920 -2.0 -2.9 outer membrane protein assembly factor BamE compare
PFLU_RS08925 -1.9 -14.4 cation acetate symporter compare
PFLU_RS06955 -1.9 -5.8 helix-turn-helix domain-containing protein compare
PFLU_RS04445 -1.9 -6.9 ABC transporter substrate-binding protein compare
PFLU_RS07645 -1.9 -4.9 hypothetical protein compare
PFLU_RS04835 -1.8 -1.3 hypothetical protein compare
PFLU_RS27020 -1.8 -10.0 MFS transporter compare
PFLU_RS31530 -1.8 -1.1 transposase compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source N-Acetyl-D-Glucosamine in Pseudomonas fluorescens SBW25-INTG

For carbon source N-Acetyl-D-Glucosamine across organisms