Experiment set5IT038 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_12070 -4.5 -9.2 imidazoleglycerol-phosphate dehydratase compare
AO353_20635 -4.4 -14.8 3-isopropylmalate dehydrogenase compare
AO353_13165 -4.3 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_05115 -4.3 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13070 -4.2 -9.5 phosphoserine phosphatase compare
AO353_07230 -4.1 -19.0 anthranilate synthase compare
AO353_08475 -4.1 -11.0 phosphoserine phosphatase compare
AO353_12085 -4.1 -10.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07220 -4.1 -9.9 anthranilate synthase compare
AO353_12520 -4.1 -13.7 glutamate synthase compare
AO353_20665 -4.1 -12.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20625 -4.1 -6.2 3-isopropylmalate dehydratase compare
AO353_20695 -4.0 -8.6 O-succinylhomoserine sulfhydrylase compare
AO353_20540 -4.0 -9.6 aromatic amino acid aminotransferase compare
AO353_02075 -4.0 -13.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12090 -3.9 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08185 -3.9 -12.3 methionine biosynthesis protein MetW compare
AO353_14505 -3.9 -14.7 ketol-acid reductoisomerase compare
AO353_12115 -3.9 -2.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08685 -3.9 -8.2 N-acetylglutamate synthase compare
AO353_02710 -3.9 -13.0 (p)ppGpp synthetase compare
AO353_00310 -3.8 -12.2 transaldolase compare
AO353_12515 -3.8 -24.1 glutamate synthase compare
AO353_12500 -3.8 -2.6 shikimate kinase compare
AO353_07210 -3.7 -6.7 indole-3-glycerol-phosphate synthase compare
AO353_14500 -3.7 -8.5 acetolactate synthase 3 regulatory subunit compare
AO353_08345 -3.6 -10.5 dihydroxy-acid dehydratase compare
AO353_08180 -3.6 -15.3 homoserine O-acetyltransferase compare
AO353_03360 -3.6 -10.5 glucose-6-phosphate dehydrogenase compare
AO353_14495 -3.5 -13.7 acetolactate synthase 3 catalytic subunit compare
AO353_02070 -3.5 -9.1 prephenate dehydratase compare
AO353_16450 -3.5 -15.9 protein-PII uridylyltransferase compare
AO353_10025 -3.5 -17.3 pyruvate carboxylase subunit B compare
AO353_12075 -3.5 -10.7 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20620 -3.4 -7.7 isopropylmalate isomerase compare
AO353_09240 -3.3 -2.3 acetylglutamate kinase compare
AO353_10670 -3.3 -8.1 shikimate dehydrogenase compare
AO353_04105 -3.2 -10.4 argininosuccinate synthase compare
AO353_05110 -3.2 -12.1 histidinol dehydrogenase compare
AO353_07215 -3.2 -9.4 anthranilate phosphoribosyltransferase compare
AO353_08780 -3.2 -9.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_10710 -3.2 -6.0 tryptophan synthase subunit beta compare
AO353_07505 -3.1 -11.5 dethiobiotin synthetase compare
AO353_10030 -3.1 -12.6 pyruvate carboxylase subunit A compare
AO353_06495 -3.1 -7.1 gamma-glutamyl phosphate reductase compare
AO353_08165 -3.1 -4.2 pyrroline-5-carboxylate reductase compare
AO353_14595 -3.1 -12.2 carbonate dehydratase compare
AO353_07525 -3.1 -16.0 biotin synthase compare
AO353_15925 -3.0 -11.8 2-isopropylmalate synthase compare
AO353_07155 -3.0 -8.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12360 -3.0 -9.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_00810 -2.9 -5.5 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_09000 -2.9 -7.3 argininosuccinate lyase compare
AO353_07510 -2.9 -12.2 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_04155 -2.9 -13.0 ornithine carbamoyltransferase compare
AO353_14400 -2.9 -6.0 Fis family transcriptional regulator compare
AO353_12365 -2.8 -4.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_16940 -2.8 -7.8 deoxycytidine triphosphate deaminase compare
AO353_07520 -2.8 -13.9 8-amino-7-oxononanoate synthase compare
AO353_04650 -2.8 -4.6 molybdenum cofactor biosynthesis protein MoaE compare
AO353_00790 -2.8 -8.9 histidine kinase conserved
AO353_12150 -2.8 -5.9 histidine kinase compare
AO353_14115 -2.7 -9.0 gamma-glutamyl kinase compare
AO353_08510 -2.7 -6.8 3-phosphoglycerate dehydrogenase compare
AO353_12145 -2.7 -5.5 nitrogen regulation protein NR(I) compare
AO353_05520 -2.7 -7.3 nicotinate-nucleotide pyrophosphorylase compare
AO353_27650 -2.7 -6.8 cell division protein FtsK compare
AO353_00805 -2.7 -15.5 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
AO353_08015 -2.6 -9.8 5,10-methylenetetrahydrofolate reductase compare
AO353_03415 -2.6 -7.8 glucokinase compare
AO353_03020 -2.6 -10.2 arginine N-succinyltransferase compare
AO353_08045 -2.6 -15.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_10035 -2.5 -7.3 LysR family transcriptional regulator compare
AO353_14370 -2.4 -8.6 glucose-6-phosphate isomerase compare
AO353_09285 -2.3 -11.3 reactive intermediate/imine deaminase compare
AO353_00815 -2.3 -14.3 Nitrate reductase (EC 1.7.99.4) (from data) conserved
AO353_06040 -2.3 -5.1 exodeoxyribonuclease V subunit alpha compare
AO353_00825 -2.3 -5.6 porin compare
AO353_08885 -2.2 -14.8 polyphosphate kinase compare
AO353_14795 -2.1 -5.5 molybdopterin-synthase adenylyltransferase compare
AO353_03410 -2.1 -3.8 chemotaxis protein CheY compare
AO353_14420 -2.1 -5.3 molecular chaperone DnaK compare
AO353_19250 -2.0 -2.7 molybdenum cofactor guanylyltransferase compare
AO353_17650 -2.0 -6.0 response regulator SirA compare
AO353_03245 -2.0 -9.0 permease DsdX compare
AO353_10455 -1.9 -2.2 tRNA modification GTPase MnmE compare
AO353_07315 -1.8 -2.7 rRNA methyltransferase compare
AO353_22800 -1.8 -4.1 sulfite reductase compare
AO353_03525 -1.8 -9.5 quinolinate synthase A compare
AO353_01375 -1.8 -6.5 phosphate acyltransferase compare
AO353_24130 -1.8 -3.4 hypothetical protein compare
AO353_00795 -1.7 -9.0 MFS transporter conserved
AO353_04565 -1.7 -6.5 nucleoid-associated protein compare
AO353_03580 -1.7 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_03775 -1.7 -7.7 pyruvate kinase compare
AO353_04055 -1.7 -2.4 methionine--tRNA ligase compare
AO353_05690 -1.7 -3.8 SsrA-binding protein compare
AO353_03250 -1.6 -2.3 gluconokinase compare
AO353_05105 -1.6 -9.1 histidinol-phosphate aminotransferase compare
AO353_02250 -1.6 -2.8 chorismate synthase compare
AO353_11770 -1.5 -2.0 molecular chaperone Hsp33 compare
AO353_10705 -1.5 -3.5 tryptophan synthase subunit alpha compare
AO353_23410 -1.5 -2.6 hypothetical protein compare
AO353_00750 -1.5 -4.2 GntR family transcriptional regulator compare
AO353_19310 -1.4 -2.2 enoyl-CoA hydratase compare
AO353_15185 -1.4 -5.0 ATPase compare
AO353_07355 -1.4 -5.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_04355 -1.4 -2.6 homoserine dehydrogenase compare
AO353_13640 -1.4 -3.7 histidine kinase compare
AO353_12105 -1.4 -6.1 peptidase S41 compare
AO353_06045 -1.4 -5.9 exodeoxyribonuclease V subunit beta compare
AO353_22645 -1.4 -2.4 hypothetical protein compare
AO353_07515 -1.4 -2.0 transporter compare
AO353_02685 -1.4 -3.9 phosphoribosylglycinamide formyltransferase compare
AO353_10445 -1.4 -2.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_03590 -1.3 -3.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_21905 -1.3 -3.5 hypothetical protein compare
AO353_02810 -1.3 -6.9 histidine kinase compare
AO353_03390 -1.3 -8.8 sugar ABC transporter permease compare
AO353_14405 -1.3 -7.9 ATPase compare
AO353_09070 -1.3 -8.3 ammonia channel protein compare
AO353_03395 -1.3 -6.5 sugar ABC transporter substrate-binding protein compare
AO353_02720 -1.3 -4.6 cysteine synthase compare
AO353_03420 -1.3 -3.2 phosphogluconate dehydratase compare
AO353_11165 -1.2 -6.4 hypothetical protein compare
AO353_04220 -1.2 -4.2 chemotaxis protein CheY compare
AO353_13100 -1.2 -1.6 GTPase RsgA compare
AO353_26045 -1.2 -2.4 hypothetical protein compare
AO353_08265 -1.2 -5.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_17620 -1.2 -9.2 L-aspartate oxidase compare
AO353_16805 -1.2 -4.5 recombinase RecA compare
AO353_04500 -1.2 -2.1 DNA repair protein RecO compare
AO353_03380 -1.1 -4.2 sugar ABC transporter ATP-binding protein compare
AO353_13160 -1.1 -2.3 membrane protease HflC compare
AO353_19090 -1.1 -1.5 MarR family transcriptional regulator compare
AO353_05420 -1.1 -1.7 peptide chain release factor 3 compare
AO353_20095 -1.1 -3.7 histidine kinase compare
AO353_14775 -1.1 -5.1 hypothetical protein compare
AO353_10040 -1.1 -5.9 transcriptional regulator compare
AO353_09890 -1.1 -4.0 phosphate ABC transporter ATP-binding protein compare
AO353_03605 -1.1 -1.6 FmdB family transcriptional regulator compare
AO353_07075 -1.1 -3.7 elongation factor Tu compare
AO353_20170 -1.1 -4.5 trigger factor compare
AO353_10730 -1.1 -1.1 hypothetical protein compare
AO353_00495 -1.1 -1.5 DNA topoisomerase I compare
AO353_02280 -1.1 -1.4 DNA mismatch repair protein MutS compare
AO353_03385 -1.1 -5.9 sugar ABC transporter permease compare
AO353_19360 -1.1 -2.3 peroxiredoxin compare
AO353_13140 -1.0 -4.2 tRNA dimethylallyltransferase compare
AO353_04325 -1.0 -2.4 hypothetical protein compare
AO353_06050 -1.0 -5.2 exodeoxyribonuclease V subunit gamma compare
AO353_05625 -1.0 -1.5 transcription elongation factor GreA compare
AO353_09050 -1.0 -2.9 recombinase XerC compare
AO353_14945 -1.0 -1.6 hypothetical protein compare
AO353_17410 -1.0 -2.3 arylsulfate sulfotransferase compare
AO353_05415 -1.0 -1.8 hypothetical protein compare
AO353_03015 -1.0 -3.8 arginine N-succinyltransferase compare
AO353_02975 -1.0 -1.7 aspartate kinase compare
AO353_13610 -1.0 -2.5 precorrin isomerase compare
AO353_00785 -1.0 -5.1 nitrate transporter compare
AO353_06320 -1.0 -3.0 AsnC family transcriptional regulator compare
AO353_09040 -1.0 -0.9 diaminopimelate epimerase compare
AO353_06720 -0.9 -2.1 NrdR family transcriptional regulator compare
AO353_15170 -0.9 -2.7 cytochrome D ubiquinol oxidase subunit III compare
AO353_11850 -0.9 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14150 -0.9 -1.4 peptidylprolyl isomerase compare
AO353_15725 -0.9 -2.9 hypothetical protein compare
AO353_01780 -0.9 -5.6 heat-shock protein Hsp90 compare
AO353_21630 -0.9 -2.5 precorrin-4 C11-methyltransferase compare
AO353_08600 -0.9 -2.5 TetR family transcriptional regulator compare
AO353_13245 -0.9 -4.7 hypothetical protein compare
AO353_12015 -0.9 -2.1 antitoxin compare
AO353_20185 -0.9 -4.2 DNA-binding protein compare
AO353_00105 -0.9 -1.5 hypothetical protein compare
AO353_13620 -0.9 -6.2 precorrin-3B C17-methyltransferase compare
AO353_08485 -0.9 -6.6 threonine dehydratase compare
AO353_16375 -0.9 -2.1 hypothetical protein compare
AO353_00355 -0.9 -1.7 transcriptional regulator compare
AO353_13600 -0.9 -2.5 precorrin-6Y C5,15-methyltransferase compare
AO353_01220 -0.9 -2.2 hypothetical protein compare
AO353_03795 -0.9 -2.6 fumarate hydratase compare
AO353_21640 -0.9 -1.2 cobalt transporter compare
AO353_12420 -0.9 -2.5 predicted FeS cluster maintenance protein (from data) compare
AO353_03615 -0.8 -1.8 cold-shock protein compare
AO353_02715 -0.8 -3.1 23S rRNA methyltransferase compare
AO353_00700 -0.8 -4.6 Cro/Cl family transcriptional regulator compare
AO353_16440 -0.8 -1.8 ArsC family transcriptional regulator compare
AO353_25680 -0.8 -3.3 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) compare
AO353_08465 -0.8 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
AO353_00650 -0.8 -2.1 cytochrome biogenesis protein compare
AO353_19060 -0.8 -3.3 CysB family transcriptional regulator compare
AO353_18745 -0.8 -2.2 flagellar biosynthesis protein flip compare
AO353_00515 -0.8 -2.5 hypothetical protein compare
AO353_01310 -0.8 -3.4 radical SAM protein compare
AO353_09475 -0.8 -2.6 hypothetical protein compare
AO353_03830 -0.8 -1.4 antibiotic biosynthesis monooxygenase compare
AO353_02615 -0.8 -4.7 cobyric acid synthase compare
AO353_18715 -0.8 -0.9 histidine kinase compare
AO353_04285 -0.8 -2.9 spermidine/putrescine ABC transporter permease compare
AO353_13420 -0.8 -1.6 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Sodium nitrate across organisms