Experiment set5IT037 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium selenite pentahydrate 0.0025 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5069 -5.2 -5.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5068 -4.3 -12.1 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5014 -4.1 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4678 -4.1 -2.0 hypothetical protein compare
Pf6N2E2_4059 -4.0 -1.9 DNA-binding protein HU-alpha compare
Pf6N2E2_5527 -3.9 -2.7 Cold shock protein CspC compare
Pf6N2E2_3782 -3.6 -4.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5430 -3.2 -9.2 Transglycosylase, Slt family compare
Pf6N2E2_5671 -3.2 -3.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3658 -3.1 -7.0 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3240 -3.0 -2.1 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3835 -2.9 -4.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3661 -2.9 -3.9 hypothetical protein compare
Pf6N2E2_5219 -2.7 -9.5 FIG140336: TPR domain protein compare
Pf6N2E2_5006 -2.6 -8.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4352 -2.6 -3.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4418 -2.6 -1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3941 -2.6 -3.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3659 -2.4 -5.7 Protein fixF compare
Pf6N2E2_623 -2.4 -1.9 FIG00954674: hypothetical protein compare
Pf6N2E2_4369 -2.3 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3303 -2.3 -4.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3460 -2.3 -2.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_58 -2.2 -2.8 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2674 -2.2 -1.8 FIG00953856: hypothetical protein compare
Pf6N2E2_3607 -2.2 -8.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2507 -2.2 -6.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4153 -2.2 -1.5 Sensory box histidine kinase compare
Pf6N2E2_2340 -2.2 -5.3 Transcriptional regulator, GntR family compare
Pf6N2E2_4803 -2.1 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2080 -2.0 -2.1 hypothetical protein compare
Pf6N2E2_971 -2.0 -2.9 hypothetical protein compare
Pf6N2E2_3475 -2.0 -1.6 hypothetical protein compare
Pf6N2E2_2506 -2.0 -11.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4148 -2.0 -5.7 Glutamate-aspartate carrier protein compare
Pf6N2E2_4204 -2.0 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1705 -1.9 -1.8 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3461 -1.9 -2.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2514 -1.8 -4.7 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5727 -1.8 -5.8 FIG00955360: hypothetical protein compare
Pf6N2E2_4077 -1.8 -1.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2473 -1.8 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_5242 -1.8 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5536 -1.7 -2.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4162 -1.7 -2.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3264 -1.7 -2.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3252 -1.7 -5.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4416 -1.7 -2.5 Tyrosine recombinase XerC compare
Pf6N2E2_2152 -1.7 -1.9 hypothetical protein compare
Pf6N2E2_6140 -1.7 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2010 -1.6 -1.8 hypothetical protein compare
Pf6N2E2_241 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_2753 -1.6 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_122 -1.6 -2.9 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5523 -1.6 -4.4 Small-conductance mechanosensitive channel compare
Pf6N2E2_446 -1.6 -6.5 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_3373 -1.6 -3.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3198 -1.6 -1.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5555 -1.5 -1.4 Cold shock protein CspA compare
Pf6N2E2_5339 -1.5 -5.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1034 -1.5 -2.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5155 -1.5 -2.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3062 -1.5 -2.8 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3095 -1.5 -1.2 hypothetical protein compare
Pf6N2E2_1162 -1.5 -1.3 Transmembrane amino acid efflux protein compare
Pf6N2E2_3611 -1.5 -1.3 HflC protein compare
Pf6N2E2_4084 -1.4 -4.9 Transcriptional regulator compare
Pf6N2E2_2217 -1.4 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2219 -1.4 -1.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4611 -1.4 -2.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2700 -1.4 -5.8 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_4691 -1.4 -2.2 hypothetical protein compare
Pf6N2E2_3828 -1.4 -2.8 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_3534 -1.4 -2.5 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2218 -1.4 -3.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4159 -1.4 -2.7 Cytochrome c4 compare
Pf6N2E2_70 -1.4 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5613 -1.4 -2.3 FIG00953674: hypothetical protein compare
Pf6N2E2_2317 -1.3 -3.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2756 -1.3 -4.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4562 -1.3 -3.0 L-cystine uptake protein TcyP compare
Pf6N2E2_5841 -1.3 -1.2 GlcG protein compare
Pf6N2E2_5720 -1.3 -7.9 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2264 -1.3 -2.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2938 -1.3 -3.1 Outer membrane lipoprotein compare
Pf6N2E2_2973 -1.3 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2022 -1.3 -5.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_3021 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_5316 -1.3 -1.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3834 -1.3 -4.8 Lipoprotein NlpD compare
Pf6N2E2_4206 -1.3 -1.3 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4092 -1.2 -2.2 FIG00954395: hypothetical protein compare
Pf6N2E2_640 -1.2 -3.2 Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system compare
Pf6N2E2_2752 -1.2 -5.1 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_300 -1.2 -2.5 CrcB protein compare
Pf6N2E2_1783 -1.2 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5406 -1.2 -1.8 FIG00958224: hypothetical protein compare
Pf6N2E2_384 -1.2 -2.7 Glycine cleavage system transcriptional activator compare
Pf6N2E2_1797 -1.2 -2.4 Transcriptional regulator compare
Pf6N2E2_5573 -1.2 -3.3 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_2318 -1.2 -4.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_1814 -1.2 -2.7 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_3328 -1.2 -2.1 transcriptional regulator compare
Pf6N2E2_3454 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_127 -1.1 -1.4 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3627 -1.1 -5.1 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Pf6N2E2_5178 -1.1 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3282 -1.1 -1.8 FIG005080: Possible exported protein compare
Pf6N2E2_5703 -1.1 -2.5 outer membrane protein H1 compare
Pf6N2E2_2261 -1.1 -4.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_3179 -1.1 -2.6 FIG021952: putative membrane protein compare
Pf6N2E2_3610 -1.1 -2.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5342 -1.1 -1.4 21 kDa hemolysin precursor compare
Pf6N2E2_3617 -1.1 -3.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1652 -1.1 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3713 -1.1 -1.4 Acyl carrier protein compare
Pf6N2E2_625 -1.1 -3.3 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_4448 -1.1 -2.9 probable P23 protein compare
Pf6N2E2_5088 -1.1 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1043 -1.1 -3.0 Transcriptional regulator, IclR family compare
Pf6N2E2_288 -1.1 -1.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_413 -1.1 -2.2 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_1441 -1.1 -1.9 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5338 -1.1 -4.9 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2509 -1.0 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4187 -1.0 -2.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2574 -1.0 -1.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_4160 -1.0 -1.0 Cytochrome c5 compare
Pf6N2E2_2474 -1.0 -4.9 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2508 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_4498 -1.0 -7.0 Outer membrane porin, OprD family compare
Pf6N2E2_4372 -1.0 -3.3 FIG00460773: hypothetical protein compare
Pf6N2E2_600 -1.0 -2.5 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_1343 -1.0 -2.9 Transcriptional regulator compare
Pf6N2E2_3908 -1.0 -3.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2274 -1.0 -3.6 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_1667 -1.0 -2.0 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_622 -1.0 -3.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_4551 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_81 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_2413 -1.0 -0.8 FIG074102: hypothetical protein compare
Pf6N2E2_5986 -1.0 -1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3251 -1.0 -5.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2325 -1.0 -3.1 Recombination protein RecR compare
Pf6N2E2_4918 -1.0 -1.6 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_2755 -1.0 -1.3 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1920 -1.0 -1.8 Rubredoxin compare
Pf6N2E2_5428 -0.9 -3.1 DNA recombination and repair protein RecO compare
Pf6N2E2_3192 -0.9 -2.7 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_621 -0.9 -3.9 TPR domain protein in aerotolerance operon compare
Pf6N2E2_5103 -0.9 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3791 -0.9 -5.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2313 -0.9 -1.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_1886 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_142 -0.9 -2.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2479 -0.9 -1.5 Transcription elongation factor GreB compare
Pf6N2E2_2278 -0.9 -6.5 Transcription-repair coupling factor compare
Pf6N2E2_5730 -0.9 -2.4 FIG00954480: hypothetical protein compare
Pf6N2E2_349 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_1371 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_4990 -0.9 -2.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_4556 -0.9 -2.5 FIG00953078: hypothetical protein compare
Pf6N2E2_5843 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_1545 -0.9 -2.6 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4749 -0.9 -2.8 DNA polymerase III epsilon subunit (EC 2.7.7.7) compare
Pf6N2E2_2870 -0.9 -2.1 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_3261 -0.9 -2.9 hypothetical protein compare
Pf6N2E2_1089 -0.9 -1.2 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1935 -0.9 -2.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5646 -0.9 -1.2 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2527 -0.9 -2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3663 -0.9 -4.3 Glycosyl transferase compare
Pf6N2E2_923 -0.9 -1.7 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_613 -0.9 -1.1 lipoprotein, putative compare
Pf6N2E2_5531 -0.9 -2.5 hypothetical protein compare
Pf6N2E2_2323 -0.9 -1.7 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_3762 -0.9 -3.9 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_624 -0.9 -3.1 hypothetical protein PA3071 compare
Pf6N2E2_6087 -0.9 -1.3 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_4197 -0.9 -4.1 DNA recombination and repair protein RecF compare
Pf6N2E2_4276 -0.9 -2.9 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3667 -0.9 -2.1 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3300 -0.9 -2.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3039 -0.9 -3.2 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1081 -0.8 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_2827 -0.8 -0.5 hypothetical protein compare
Pf6N2E2_2510 -0.8 -2.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5341 -0.8 -2.3 Stringent starvation protein B compare
Pf6N2E2_339 -0.8 -2.0 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_5705 -0.8 -1.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3603 -0.8 -3.0 FIG003573: hypothetical protein compare
Pf6N2E2_3253 -0.8 -2.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2472 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_3498 -0.8 -2.4 FIG00953349: hypothetical protein compare
Pf6N2E2_5740 -0.8 -2.4 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_64 -0.8 -2.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2113 -0.8 -3.0 Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf6N2E2_396 -0.8 -2.8 hypothetical protein compare
Pf6N2E2_3258 -0.8 -2.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5476 -0.8 -2.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium selenite pentahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium selenite pentahydrate across organisms