Experiment set5IT037 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -5.2 -6.2 O-succinylhomoserine sulfhydrylase compare
AO353_12070 -4.7 -7.3 imidazoleglycerol-phosphate dehydratase compare
AO353_13070 -4.5 -9.2 phosphoserine phosphatase compare
AO353_20625 -4.5 -4.4 3-isopropylmalate dehydratase compare
AO353_05115 -4.5 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13165 -4.4 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20620 -4.3 -8.7 isopropylmalate isomerase compare
AO353_08185 -4.2 -10.6 methionine biosynthesis protein MetW compare
AO353_00310 -4.2 -11.2 transaldolase compare
AO353_02070 -4.2 -8.1 prephenate dehydratase compare
AO353_12520 -4.2 -12.9 glutamate synthase compare
AO353_20665 -4.2 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08475 -4.2 -10.4 phosphoserine phosphatase compare
AO353_14505 -4.1 -13.0 ketol-acid reductoisomerase compare
AO353_07230 -4.1 -18.2 anthranilate synthase compare
AO353_20635 -4.1 -14.6 3-isopropylmalate dehydrogenase compare
AO353_20540 -4.0 -9.3 aromatic amino acid aminotransferase compare
AO353_07220 -4.0 -9.3 anthranilate synthase compare
AO353_12085 -4.0 -10.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07210 -3.9 -6.0 indole-3-glycerol-phosphate synthase compare
AO353_10670 -3.9 -9.3 shikimate dehydrogenase compare
AO353_02075 -3.9 -13.0 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12090 -3.8 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12515 -3.8 -23.2 glutamate synthase compare
AO353_07215 -3.7 -8.9 anthranilate phosphoribosyltransferase compare
AO353_08345 -3.7 -10.6 dihydroxy-acid dehydratase compare
AO353_05110 -3.7 -12.4 histidinol dehydrogenase compare
AO353_12500 -3.6 -2.5 shikimate kinase compare
AO353_08180 -3.6 -14.9 homoserine O-acetyltransferase compare
AO353_12075 -3.6 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14495 -3.5 -12.9 acetolactate synthase 3 catalytic subunit compare
AO353_07510 -3.5 -12.3 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_08685 -3.4 -9.1 N-acetylglutamate synthase compare
AO353_08510 -3.4 -6.5 3-phosphoglycerate dehydrogenase compare
AO353_22800 -3.4 -4.5 sulfite reductase compare
AO353_09000 -3.3 -6.0 argininosuccinate lyase compare
AO353_10025 -3.3 -16.6 pyruvate carboxylase subunit B compare
AO353_03415 -3.3 -7.7 glucokinase compare
AO353_07505 -3.3 -11.1 dethiobiotin synthetase compare
AO353_02710 -3.3 -14.3 (p)ppGpp synthetase compare
AO353_07525 -3.2 -16.2 biotin synthase compare
AO353_09240 -3.2 -2.2 acetylglutamate kinase compare
AO353_12360 -3.2 -10.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_03360 -3.2 -10.6 glucose-6-phosphate dehydrogenase compare
AO353_16940 -3.1 -7.0 deoxycytidine triphosphate deaminase compare
AO353_07520 -3.1 -15.3 8-amino-7-oxononanoate synthase compare
AO353_10030 -3.1 -12.8 pyruvate carboxylase subunit A compare
AO353_07155 -3.0 -8.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14400 -3.0 -5.6 Fis family transcriptional regulator compare
AO353_14115 -2.9 -8.4 gamma-glutamyl kinase compare
AO353_08045 -2.9 -16.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_04155 -2.9 -13.9 ornithine carbamoyltransferase compare
AO353_14500 -2.9 -8.8 acetolactate synthase 3 regulatory subunit compare
AO353_14595 -2.9 -11.5 carbonate dehydratase compare
AO353_09285 -2.9 -11.4 reactive intermediate/imine deaminase compare
AO353_04105 -2.8 -10.2 argininosuccinate synthase compare
AO353_15925 -2.8 -10.7 2-isopropylmalate synthase compare
AO353_12115 -2.7 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_10035 -2.7 -8.5 LysR family transcriptional regulator compare
AO353_10710 -2.6 -6.1 tryptophan synthase subunit beta compare
AO353_06495 -2.6 -5.5 gamma-glutamyl phosphate reductase compare
AO353_08780 -2.6 -8.1 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08015 -2.6 -9.1 5,10-methylenetetrahydrofolate reductase compare
AO353_12365 -2.5 -3.4 phosphoribosyl-AMP cyclohydrolase compare
AO353_03020 -2.5 -10.1 arginine N-succinyltransferase compare
AO353_00495 -2.4 -2.8 DNA topoisomerase I compare
AO353_08165 -2.3 -4.1 pyrroline-5-carboxylate reductase compare
AO353_02685 -2.3 -4.7 phosphoribosylglycinamide formyltransferase compare
AO353_03580 -2.3 -4.5 ATP-dependent DNA helicase RuvB compare
AO353_19060 -2.2 -6.8 CysB family transcriptional regulator compare
AO353_10705 -2.2 -5.1 tryptophan synthase subunit alpha compare
AO353_15250 -2.2 -4.9 cytochrome B compare
AO353_02250 -2.2 -3.8 chorismate synthase compare
AO353_05520 -2.1 -5.7 nicotinate-nucleotide pyrophosphorylase compare
AO353_01375 -2.1 -7.7 phosphate acyltransferase compare
AO353_03585 -2.1 -3.8 ATP-dependent DNA helicase RuvA compare
AO353_00825 -2.0 -4.8 porin compare
AO353_07355 -2.0 -6.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03525 -1.9 -9.8 quinolinate synthase A compare
AO353_02060 -1.9 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_21625 -1.8 -3.2 Fe/S biogenesis protein NfuA compare
AO353_02975 -1.8 -4.0 aspartate kinase compare
AO353_13600 -1.8 -4.2 precorrin-6Y C5,15-methyltransferase compare
AO353_13640 -1.8 -5.1 histidine kinase compare
AO353_08265 -1.8 -6.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_04355 -1.8 -2.2 homoserine dehydrogenase compare
AO353_05105 -1.7 -8.5 histidinol-phosphate aminotransferase compare
AO353_12420 -1.7 -3.8 predicted FeS cluster maintenance protein (from data) compare
AO353_14370 -1.7 -5.7 glucose-6-phosphate isomerase compare
AO353_08885 -1.7 -11.6 polyphosphate kinase compare
AO353_02940 -1.7 -3.9 DNA-binding protein compare
AO353_11165 -1.6 -8.0 hypothetical protein compare
AO353_07515 -1.6 -2.3 transporter compare
AO353_27650 -1.5 -3.7 cell division protein FtsK compare
AO353_03250 -1.5 -1.9 gluconokinase compare
AO353_03615 -1.5 -3.5 cold-shock protein compare
AO353_00490 -1.5 -3.3 PasA protein compare
AO353_06050 -1.5 -6.5 exodeoxyribonuclease V subunit gamma compare
AO353_21665 -1.5 -5.3 magnesium chelatase compare
AO353_05690 -1.4 -3.5 SsrA-binding protein compare
AO353_04565 -1.4 -5.3 nucleoid-associated protein compare
AO353_00355 -1.4 -2.7 transcriptional regulator compare
AO353_02005 -1.4 -1.2 hypothetical protein compare
AO353_13140 -1.4 -5.1 tRNA dimethylallyltransferase compare
AO353_23730 -1.3 -3.5 hypothetical protein compare
AO353_01780 -1.3 -7.8 heat-shock protein Hsp90 compare
AO353_03390 -1.3 -9.1 sugar ABC transporter permease compare
AO353_12145 -1.3 -3.9 nitrogen regulation protein NR(I) compare
AO353_06040 -1.3 -3.6 exodeoxyribonuclease V subunit alpha compare
AO353_07075 -1.3 -4.7 elongation factor Tu compare
AO353_14420 -1.3 -3.4 molecular chaperone DnaK compare
AO353_03425 -1.3 -6.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_14220 -1.3 -1.1 ribosomal large subunit pseudouridine synthase D compare
AO353_03420 -1.2 -3.8 phosphogluconate dehydratase compare
AO353_07315 -1.2 -2.3 rRNA methyltransferase compare
AO353_10455 -1.2 -1.8 tRNA modification GTPase MnmE compare
AO353_24130 -1.2 -2.6 hypothetical protein compare
AO353_20175 -1.2 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_03245 -1.2 -5.9 permease DsdX compare
AO353_03590 -1.2 -2.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_16805 -1.2 -4.5 recombinase RecA compare
AO353_16530 -1.2 -1.7 ribonuclease HII compare
AO353_20170 -1.2 -4.4 trigger factor compare
AO353_13605 -1.2 -6.3 oxidoreductase compare
AO353_27550 -1.1 -1.6 hypothetical protein compare
AO353_12105 -1.1 -5.0 peptidase S41 compare
AO353_03775 -1.1 -6.1 pyruvate kinase compare
AO353_09345 -1.1 -2.2 hypothetical protein compare
AO353_06045 -1.1 -5.4 exodeoxyribonuclease V subunit beta compare
AO353_11850 -1.1 -3.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14405 -1.1 -6.4 ATPase compare
AO353_02595 -1.1 -2.7 cobalamin synthase compare
AO353_15480 -1.1 -2.3 hypothetical protein compare
AO353_12240 -1.1 -3.2 histidine utilization repressor compare
AO353_09890 -1.1 -3.7 phosphate ABC transporter ATP-binding protein compare
AO353_14775 -1.0 -3.6 hypothetical protein compare
AO353_10430 -1.0 -2.7 chromosome partitioning protein ParB compare
AO353_21615 -1.0 -6.8 methionine synthase compare
AO353_02640 -1.0 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_00860 -1.0 -3.6 EstX protein compare
AO353_03815 -1.0 -1.3 heme utilization protein compare
AO353_13620 -1.0 -5.9 precorrin-3B C17-methyltransferase compare
AO353_08470 -1.0 -3.3 RNA pyrophosphohydrolase compare
AO353_03430 -1.0 -2.3 methylglyoxal synthase compare
AO353_19770 -1.0 -1.4 peptidase compare
AO353_19360 -1.0 -1.6 peroxiredoxin compare
AO353_27365 -1.0 -2.8 hypothetical protein compare
AO353_00750 -1.0 -3.5 GntR family transcriptional regulator compare
AO353_04220 -1.0 -3.4 chemotaxis protein CheY compare
AO353_02635 -0.9 -4.7 cobyrinic acid a,c-diamide synthase compare
AO353_02810 -0.9 -4.7 histidine kinase compare
AO353_11770 -0.9 -1.3 molecular chaperone Hsp33 compare
AO353_15610 -0.9 -3.3 chemotaxis protein CheY compare
AO353_20095 -0.9 -3.7 histidine kinase compare
AO353_14740 -0.9 -2.7 GTP-binding protein compare
AO353_15170 -0.9 -2.3 cytochrome D ubiquinol oxidase subunit III compare
AO353_06320 -0.9 -3.0 AsnC family transcriptional regulator compare
AO353_01410 -0.9 -2.5 ribonuclease E compare
AO353_02610 -0.8 -3.8 adenosylcobinamide kinase compare
AO353_11750 -0.8 -1.9 ATPase compare
AO353_28425 -0.8 -2.4 TetR family transcriptional regulator compare
AO353_08980 -0.8 -2.4 heme biosynthesis operon protein HemX compare
AO353_13100 -0.8 -1.0 GTPase RsgA compare
AO353_20630 -0.8 -4.3 SAM-dependent methyltransferase compare
AO353_02720 -0.8 -3.3 cysteine synthase compare
AO353_03410 -0.8 -1.7 chemotaxis protein CheY compare
AO353_15725 -0.8 -2.5 hypothetical protein compare
AO353_28680 -0.8 -2.8 transposase compare
AO353_03605 -0.8 -1.2 FmdB family transcriptional regulator compare
AO353_12395 -0.8 -2.1 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_23945 -0.8 -1.1 hypothetical protein compare
AO353_13200 -0.8 -5.3 exoribonuclease R compare
AO353_03795 -0.8 -2.2 fumarate hydratase compare
AO353_24440 -0.8 -2.1 reactive intermediate/imine deaminase compare
AO353_00515 -0.8 -2.4 hypothetical protein compare
AO353_19295 -0.8 -1.3 hypothetical protein compare
AO353_23785 -0.8 -1.4 hypothetical protein compare
AO353_13155 -0.8 -2.4 hypothetical protein compare
AO353_10985 -0.8 -1.9 hypothetical protein compare
AO353_21660 -0.8 -5.3 cobalamin biosynthesis protein CobN compare
AO353_04365 -0.8 -3.1 recombinase XerD compare
AO353_03395 -0.7 -3.8 sugar ABC transporter substrate-binding protein compare
AO353_18540 -0.7 -1.8 pseudouridine synthase compare
AO353_12510 -0.7 -4.8 cell division protein compare
AO353_14485 -0.7 -1.0 pseudouridine synthase compare
AO353_26830 -0.7 -2.7 histidine kinase compare
AO353_27155 -0.7 -1.8 hypothetical protein compare
AO353_16210 -0.7 -5.4 XRE family transcriptional regulator compare
AO353_03385 -0.7 -3.8 sugar ABC transporter permease compare
AO353_12790 -0.7 -1.0 hypothetical protein compare
AO353_15490 -0.7 -1.5 hypothetical protein compare
AO353_13615 -0.7 -5.8 precorrin-2 C20-methyltransferase compare
AO353_08505 -0.7 -5.0 FAD-linked oxidase compare
AO353_22500 -0.7 -1.0 hypothetical protein compare
AO353_13245 -0.7 -3.5 hypothetical protein compare
AO353_07250 -0.7 -1.6 polyamine ABC transporter permease compare
AO353_24190 -0.7 -2.2 hypothetical protein compare
AO353_05420 -0.7 -1.0 peptide chain release factor 3 compare
AO353_02605 -0.7 -3.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_12880 -0.7 -1.3 ADP-heptose--LPS heptosyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms