Experiment set5IT036 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Thymine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20665 -4.7 -11.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12070 -4.7 -7.2 imidazoleglycerol-phosphate dehydratase compare
AO353_12085 -4.6 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07220 -4.6 -8.3 anthranilate synthase compare
AO353_26570 -4.6 -7.0 Dihydropyrimidinase (EC 3.5.2.2) (from data) conserved
AO353_13070 -4.5 -9.2 phosphoserine phosphatase compare
AO353_12520 -4.4 -12.4 glutamate synthase compare
AO353_05115 -4.4 -12.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20635 -4.4 -14.7 3-isopropylmalate dehydrogenase compare
AO353_00310 -4.3 -11.0 transaldolase compare
AO353_07230 -4.2 -17.9 anthranilate synthase compare
AO353_12515 -4.2 -22.6 glutamate synthase compare
AO353_12365 -4.2 -5.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_20625 -4.1 -4.9 3-isopropylmalate dehydratase compare
AO353_13165 -4.1 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_22945 -4.1 -15.6 glycogen branching protein compare
AO353_02075 -3.9 -13.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_26560 -3.9 -8.5 Beta-ureidopropionase (EC 3.5.1.6) (from data) conserved
AO353_14505 -3.8 -13.8 ketol-acid reductoisomerase compare
AO353_12145 -3.8 -5.2 nitrogen regulation protein NR(I) compare
AO353_08345 -3.8 -10.6 dihydroxy-acid dehydratase compare
AO353_05110 -3.8 -12.9 histidinol dehydrogenase compare
AO353_08185 -3.7 -12.3 methionine biosynthesis protein MetW compare
AO353_12500 -3.7 -2.5 shikimate kinase compare
AO353_10710 -3.6 -5.0 tryptophan synthase subunit beta compare
AO353_02710 -3.6 -14.8 (p)ppGpp synthetase compare
AO353_12150 -3.5 -7.9 histidine kinase compare
AO353_20695 -3.5 -8.1 O-succinylhomoserine sulfhydrylase compare
AO353_04155 -3.5 -14.1 ornithine carbamoyltransferase compare
AO353_14495 -3.5 -12.8 acetolactate synthase 3 catalytic subunit compare
AO353_14500 -3.5 -8.6 acetolactate synthase 3 regulatory subunit compare
AO353_12075 -3.4 -10.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07215 -3.3 -9.5 anthranilate phosphoribosyltransferase compare
AO353_08015 -3.3 -8.3 5,10-methylenetetrahydrofolate reductase compare
AO353_06495 -3.3 -7.3 gamma-glutamyl phosphate reductase compare
AO353_16450 -3.3 -13.6 protein-PII uridylyltransferase compare
AO353_09240 -3.3 -2.2 acetylglutamate kinase compare
AO353_08180 -3.3 -14.4 homoserine O-acetyltransferase compare
AO353_08885 -3.2 -17.8 polyphosphate kinase compare
AO353_15295 -3.1 -8.7 division/cell wall cluster transcriptional repressor MraZ compare
AO353_07210 -3.1 -6.0 indole-3-glycerol-phosphate synthase compare
AO353_26565 -3.1 -8.9 nitrate reductase conserved
AO353_20620 -3.1 -6.7 isopropylmalate isomerase compare
AO353_08685 -3.0 -9.7 N-acetylglutamate synthase compare
AO353_09155 -3.0 -10.0 amino acid dehydrogenase compare
AO353_20175 -3.0 -4.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_02070 -2.9 -9.3 prephenate dehydratase compare
AO353_08165 -2.8 -3.9 pyrroline-5-carboxylate reductase compare
AO353_13100 -2.8 -2.6 GTPase RsgA compare
AO353_04105 -2.8 -10.9 argininosuccinate synthase compare
AO353_14150 -2.7 -2.6 peptidylprolyl isomerase compare
AO353_08510 -2.7 -6.7 3-phosphoglycerate dehydrogenase compare
AO353_06085 -2.7 -12.3 omega amino acid--pyruvate aminotransferase conserved
AO353_07155 -2.6 -7.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12090 -2.5 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12115 -2.4 -3.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_06045 -2.4 -9.1 exodeoxyribonuclease V subunit beta compare
AO353_00825 -2.4 -5.2 porin compare
AO353_15925 -2.4 -8.6 2-isopropylmalate synthase compare
AO353_09000 -2.3 -6.3 argininosuccinate lyase compare
AO353_14420 -2.3 -5.7 molecular chaperone DnaK compare
AO353_06090 -2.3 -9.8 LysR family transcriptional regulator conserved
AO353_06050 -2.3 -8.3 exodeoxyribonuclease V subunit gamma compare
AO353_10025 -2.2 -13.6 pyruvate carboxylase subunit B compare
AO353_10705 -2.2 -5.1 tryptophan synthase subunit alpha compare
AO353_08465 -2.1 -11.5 phosphoenolpyruvate-protein phosphotransferase compare
AO353_08475 -2.1 -8.1 phosphoserine phosphatase compare
AO353_07315 -2.1 -2.9 rRNA methyltransferase compare
AO353_10030 -2.1 -9.7 pyruvate carboxylase subunit A compare
AO353_05690 -2.1 -4.8 SsrA-binding protein compare
AO353_03580 -2.1 -4.7 ATP-dependent DNA helicase RuvB compare
AO353_02250 -2.1 -3.4 chorismate synthase compare
AO353_27550 -2.0 -2.3 hypothetical protein compare
AO353_04220 -2.0 -6.5 chemotaxis protein CheY compare
AO353_09040 -2.0 -2.4 diaminopimelate epimerase compare
AO353_21625 -2.0 -3.4 Fe/S biogenesis protein NfuA compare
AO353_06040 -2.0 -4.5 exodeoxyribonuclease V subunit alpha compare
AO353_02040 -1.9 -2.7 integration host factor subunit beta compare
AO353_00495 -1.9 -2.4 DNA topoisomerase I compare
AO353_20540 -1.9 -7.6 aromatic amino acid aminotransferase compare
AO353_12345 -1.8 -2.7 twin-arginine protein translocation system subunit TatC compare
AO353_16425 -1.8 -1.7 Fe-S metabolism protein SufE compare
AO353_23495 -1.8 -2.2 SAM-dependent methyltransferase compare
AO353_12105 -1.8 -6.5 peptidase S41 compare
AO353_00890 -1.8 -5.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_20370 -1.8 -4.0 MerR family transcriptional regulator compare
AO353_01550 -1.8 -5.8 hypothetical protein compare
AO353_03360 -1.8 -8.0 glucose-6-phosphate dehydrogenase compare
AO353_14115 -1.7 -5.9 gamma-glutamyl kinase compare
AO353_03020 -1.7 -7.4 arginine N-succinyltransferase compare
AO353_12360 -1.7 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_01375 -1.7 -4.5 phosphate acyltransferase compare
AO353_18780 -1.7 -6.4 cobyrinic acid a,c-diamide synthase compare
AO353_14775 -1.7 -5.6 hypothetical protein compare
AO353_10985 -1.7 -2.9 hypothetical protein compare
AO353_08115 -1.6 -6.4 energy transducer TonB compare
AO353_04355 -1.6 -2.6 homoserine dehydrogenase compare
AO353_25585 -1.6 -1.9 argininosuccinate lyase compare
AO353_10035 -1.5 -6.2 LysR family transcriptional regulator compare
AO353_14400 -1.5 -4.7 Fis family transcriptional regulator compare
AO353_11750 -1.5 -2.2 ATPase compare
AO353_08780 -1.5 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_20095 -1.4 -4.2 histidine kinase compare
AO353_12390 -1.4 -3.8 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_19090 -1.4 -2.1 MarR family transcriptional regulator compare
AO353_15445 -1.3 -3.5 disulfide bond formation protein B compare
AO353_07525 -1.3 -8.3 biotin synthase compare
AO353_12790 -1.3 -2.4 hypothetical protein compare
AO353_07445 -1.3 -2.1 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_14370 -1.3 -5.0 glucose-6-phosphate isomerase compare
AO353_04055 -1.3 -1.2 methionine--tRNA ligase compare
AO353_10435 -1.3 -6.9 chromosome partitioning protein compare
AO353_12395 -1.3 -3.3 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_02020 -1.3 -4.1 hypothetical protein compare
AO353_13640 -1.3 -3.6 histidine kinase compare
AO353_09070 -1.2 -6.9 ammonia channel protein compare
AO353_10670 -1.2 -5.0 shikimate dehydrogenase compare
AO353_19085 -1.2 -2.7 organic hydroperoxide resistance protein compare
AO353_23385 -1.2 -5.6 trans-2-enoyl-CoA reductase compare
AO353_00750 -1.2 -3.7 GntR family transcriptional regulator compare
AO353_02720 -1.2 -3.7 cysteine synthase compare
AO353_19055 -1.2 -5.6 universal stress protein UspA compare
AO353_00885 -1.2 -3.0 3-methylitaconate isomerase compare
AO353_01190 -1.2 -1.8 hypothetical protein compare
AO353_01080 -1.2 -6.8 hypothetical protein compare
AO353_00900 -1.2 -5.5 2-methylisocitrate lyase compare
AO353_24260 -1.2 -1.1 hypothetical protein compare
AO353_19295 -1.2 -1.3 hypothetical protein compare
AO353_24130 -1.2 -2.8 hypothetical protein compare
AO353_12455 -1.2 -3.1 nuclease compare
AO353_15725 -1.1 -3.4 hypothetical protein compare
AO353_14990 -1.1 -1.3 hypothetical protein compare
AO353_16710 -1.1 -2.7 hypothetical protein compare
AO353_22800 -1.1 -2.3 sulfite reductase compare
AO353_20170 -1.1 -3.4 trigger factor compare
AO353_12015 -1.1 -2.0 antitoxin compare
AO353_16745 -1.1 -2.0 ArsR family transcriptional regulator compare
AO353_24255 -1.1 -2.7 hypothetical protein compare
AO353_09050 -1.1 -2.2 recombinase XerC compare
AO353_15250 -1.1 -2.9 cytochrome B compare
AO353_27675 -1.1 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_09060 -1.1 -1.6 hypothetical protein compare
AO353_05225 -1.1 -7.9 hypothetical protein compare
AO353_03630 -1.1 -7.0 porin compare
AO353_03615 -1.0 -2.8 cold-shock protein compare
AO353_28425 -1.0 -2.4 TetR family transcriptional regulator compare
AO353_08470 -1.0 -3.2 RNA pyrophosphohydrolase compare
AO353_27680 -1.0 -4.5 ATP-dependent Clp protease adaptor ClpS compare
AO353_03590 -1.0 -1.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_16940 -1.0 -3.7 deoxycytidine triphosphate deaminase compare
AO353_27720 -1.0 -2.8 cupin compare
AO353_04520 -1.0 -3.7 elongation factor 4 compare
AO353_01015 -1.0 -1.6 hypothetical protein compare
AO353_06720 -1.0 -2.0 NrdR family transcriptional regulator compare
AO353_24700 -1.0 -2.8 peptidase compare
AO353_10455 -0.9 -1.3 tRNA modification GTPase MnmE compare
AO353_27130 -0.9 -1.9 hypothetical protein compare
AO353_11165 -0.9 -4.6 hypothetical protein compare
AO353_10040 -0.9 -5.0 transcriptional regulator compare
AO353_28930 -0.9 -2.4 hypothetical protein compare
AO353_02195 -0.9 -3.5 spermidine synthase compare
AO353_04365 -0.9 -4.0 recombinase XerD compare
AO353_07730 -0.9 -2.2 hypothetical protein compare
AO353_01970 -0.9 -5.6 hypothetical protein compare
AO353_19145 -0.9 -2.7 protease HtpX compare
AO353_10430 -0.9 -2.1 chromosome partitioning protein ParB compare
AO353_27185 -0.9 -3.2 hypothetical protein compare
AO353_10445 -0.9 -1.3 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_27650 -0.9 -2.7 cell division protein FtsK compare
AO353_04500 -0.9 -1.6 DNA repair protein RecO compare
AO353_12930 -0.8 -1.7 GlcNAc-PI de-N-acetylase compare
AO353_15390 -0.8 -4.8 histidine kinase compare
AO353_01975 -0.8 -4.7 glycosyl transferase compare
AO353_09705 -0.8 -1.8 hypothetical protein compare
AO353_14740 -0.8 -2.1 GTP-binding protein compare
AO353_11850 -0.8 -2.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_13245 -0.8 -4.5 hypothetical protein compare
AO353_06405 -0.8 -3.0 hypothetical protein compare
AO353_18135 -0.8 -1.2 hypothetical protein compare
AO353_01780 -0.8 -4.8 heat-shock protein Hsp90 compare
AO353_16070 -0.8 -2.5 PadR family transcriptional regulator compare
AO353_07355 -0.8 -3.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_02940 -0.8 -1.6 DNA-binding protein compare
AO353_20185 -0.8 -3.9 DNA-binding protein compare
AO353_12260 -0.8 -2.2 ABC transporter permease compare
AO353_08265 -0.8 -3.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_26235 -0.8 -3.0 hypothetical protein compare
AO353_03245 -0.8 -3.8 permease DsdX compare
AO353_06455 -0.8 -1.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_13290 -0.8 -3.0 transglutaminase compare
AO353_08170 -0.8 -2.7 hypothetical protein compare
AO353_24440 -0.8 -2.1 reactive intermediate/imine deaminase compare
AO353_13160 -0.8 -1.6 membrane protease HflC compare
AO353_08645 -0.8 -1.7 transporter compare
AO353_03515 -0.8 -1.2 cold-shock protein compare
AO353_03000 -0.8 -2.3 topoisomerase II compare
AO353_24745 -0.8 -1.2 hypothetical protein compare
AO353_10940 -0.8 -2.5 cytochrome compare
AO353_15555 -0.8 -2.7 fumarylacetoacetase compare
AO353_22395 -0.8 -2.5 pyrroloquinoline quinone biosynthesis protein PqqB compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Thymine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Thymine across organisms