Experiment set5IT035 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Inosine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_07210 -4.1 -6.3 indole-3-glycerol-phosphate synthase compare
AO353_13395 -4.0 -3.9 protein hupE compare
AO353_20625 -3.7 -6.1 3-isopropylmalate dehydratase compare
AO353_20635 -3.6 -14.1 3-isopropylmalate dehydrogenase compare
AO353_05115 -3.6 -13.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12070 -3.4 -11.7 imidazoleglycerol-phosphate dehydratase compare
AO353_00310 -3.4 -11.6 transaldolase compare
AO353_08685 -3.4 -9.2 N-acetylglutamate synthase compare
AO353_13070 -3.3 -11.1 phosphoserine phosphatase compare
AO353_12520 -3.3 -14.0 glutamate synthase compare
AO353_20665 -3.2 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07215 -3.2 -9.3 anthranilate phosphoribosyltransferase compare
AO353_12075 -3.2 -10.5 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14505 -3.2 -14.7 ketol-acid reductoisomerase compare
AO353_06495 -3.2 -7.6 gamma-glutamyl phosphate reductase compare
AO353_14220 -3.1 -2.9 ribosomal large subunit pseudouridine synthase D compare
AO353_13520 -3.1 -7.8 urease accessory protein UreD conserved
AO353_08345 -3.1 -11.0 dihydroxy-acid dehydratase compare
AO353_08185 -3.0 -12.3 methionine biosynthesis protein MetW compare
AO353_14420 -3.0 -5.4 molecular chaperone DnaK compare
AO353_20695 -3.0 -6.6 O-succinylhomoserine sulfhydrylase compare
AO353_07230 -3.0 -17.5 anthranilate synthase compare
AO353_12515 -3.0 -21.4 glutamate synthase compare
AO353_22945 -2.9 -14.5 glycogen branching protein compare
AO353_02075 -2.9 -13.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12085 -2.9 -10.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_02710 -2.8 -13.8 (p)ppGpp synthetase compare
AO353_13165 -2.8 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
AO353_02320 -2.8 -9.6 allantoinase compare
AO353_12365 -2.8 -4.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_12145 -2.8 -5.7 nitrogen regulation protein NR(I) compare
AO353_02330 -2.8 -4.0 allantoicase compare
AO353_13495 -2.7 -12.2 Urease (EC 3.5.1.5) (from data) conserved
AO353_05110 -2.7 -12.3 histidinol dehydrogenase compare
AO353_07220 -2.7 -9.9 anthranilate synthase compare
AO353_02070 -2.7 -8.4 prephenate dehydratase compare
AO353_08475 -2.7 -9.2 phosphoserine phosphatase compare
AO353_10710 -2.6 -6.3 tryptophan synthase subunit beta compare
AO353_08510 -2.6 -7.2 3-phosphoglycerate dehydrogenase compare
AO353_20620 -2.6 -6.8 isopropylmalate isomerase compare
AO353_13400 -2.6 -10.3 urease accessory protein UreG conserved
AO353_16450 -2.6 -12.7 protein-PII uridylyltransferase compare
AO353_13410 -2.6 -7.6 urease accessory protein UreE conserved
AO353_12090 -2.6 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07155 -2.5 -8.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_04105 -2.5 -10.0 argininosuccinate synthase compare
AO353_14500 -2.5 -8.5 acetolactate synthase 3 regulatory subunit compare
AO353_14495 -2.5 -12.4 acetolactate synthase 3 catalytic subunit compare
AO353_08180 -2.5 -13.5 homoserine O-acetyltransferase compare
AO353_09240 -2.5 -4.0 acetylglutamate kinase compare
AO353_08015 -2.4 -9.4 5,10-methylenetetrahydrofolate reductase compare
AO353_03590 -2.4 -4.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_08165 -2.4 -4.3 pyrroline-5-carboxylate reductase compare
AO353_12360 -2.4 -8.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_13160 -2.4 -3.6 membrane protease HflC compare
AO353_14115 -2.4 -7.2 gamma-glutamyl kinase compare
AO353_15925 -2.3 -11.4 2-isopropylmalate synthase compare
AO353_04155 -2.3 -12.1 ornithine carbamoyltransferase compare
AO353_00825 -2.3 -4.9 porin compare
AO353_04220 -2.2 -6.8 chemotaxis protein CheY compare
AO353_12150 -2.2 -7.1 histidine kinase compare
AO353_27650 -2.2 -5.6 cell division protein FtsK compare
AO353_13515 -2.2 -4.5 Urease (EC 3.5.1.5) (from data) compare
AO353_02325 -2.2 -5.7 OHCU decarboxylase conserved
AO353_20540 -2.1 -6.2 aromatic amino acid aminotransferase compare
AO353_05055 -2.1 -7.6 peptidylprolyl isomerase conserved
AO353_03360 -2.1 -7.9 glucose-6-phosphate dehydrogenase compare
AO353_09000 -2.0 -6.5 argininosuccinate lyase compare
AO353_06040 -2.0 -4.6 exodeoxyribonuclease V subunit alpha compare
AO353_10670 -2.0 -5.5 shikimate dehydrogenase compare
AO353_06045 -1.9 -8.1 exodeoxyribonuclease V subunit beta compare
AO353_08465 -1.9 -12.7 phosphoenolpyruvate-protein phosphotransferase compare
AO353_14150 -1.9 -2.6 peptidylprolyl isomerase compare
AO353_00490 -1.9 -3.7 PasA protein compare
AO353_13405 -1.9 -3.0 urease accessory protein UreF compare
AO353_20565 -1.9 -2.3 tRNA-Ala compare
AO353_03580 -1.9 -4.0 ATP-dependent DNA helicase RuvB compare
AO353_03970 -1.8 -10.9 diguanylate cyclase compare
AO353_06050 -1.8 -7.5 exodeoxyribonuclease V subunit gamma compare
AO353_23495 -1.7 -2.3 SAM-dependent methyltransferase compare
AO353_03020 -1.7 -7.3 arginine N-succinyltransferase compare
AO353_05550 -1.7 -6.6 pseudouridine synthase compare
AO353_01375 -1.7 -5.3 phosphate acyltransferase compare
AO353_05420 -1.6 -2.4 peptide chain release factor 3 compare
AO353_07250 -1.6 -2.5 polyamine ABC transporter permease compare
AO353_14400 -1.6 -4.7 Fis family transcriptional regulator compare
AO353_28425 -1.6 -3.9 TetR family transcriptional regulator compare
AO353_10025 -1.6 -10.2 pyruvate carboxylase subunit B compare
AO353_02280 -1.6 -2.5 DNA mismatch repair protein MutS compare
AO353_12500 -1.6 -2.3 shikimate kinase compare
AO353_08265 -1.6 -5.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_14370 -1.5 -6.1 glucose-6-phosphate isomerase compare
AO353_14595 -1.5 -7.5 carbonate dehydratase compare
AO353_11165 -1.5 -8.0 hypothetical protein compare
AO353_11850 -1.5 -4.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_15410 -1.5 -1.7 hypothetical protein compare
AO353_10030 -1.5 -8.1 pyruvate carboxylase subunit A compare
AO353_11940 -1.5 -2.3 hypothetical protein compare
AO353_18540 -1.5 -3.0 pseudouridine synthase compare
AO353_10035 -1.4 -6.6 LysR family transcriptional regulator compare
AO353_02250 -1.4 -2.3 chorismate synthase compare
AO353_08885 -1.4 -9.8 polyphosphate kinase compare
AO353_26195 -1.4 -2.6 hypothetical protein compare
AO353_19145 -1.4 -4.5 protease HtpX compare
AO353_02940 -1.4 -2.9 DNA-binding protein compare
AO353_08470 -1.4 -3.6 RNA pyrophosphohydrolase compare
AO353_13155 -1.4 -3.7 hypothetical protein compare
AO353_11770 -1.4 -2.0 molecular chaperone Hsp33 compare
AO353_10705 -1.4 -3.1 tryptophan synthase subunit alpha compare
AO353_07645 -1.4 -1.3 sarcosine oxidase subunit gamma compare
AO353_08485 -1.4 -9.0 threonine dehydratase compare
AO353_14930 -1.3 -3.1 GntR family transcriptional regulator compare
AO353_06320 -1.3 -4.2 AsnC family transcriptional regulator compare
AO353_20185 -1.3 -4.7 DNA-binding protein compare
AO353_24130 -1.3 -2.5 hypothetical protein compare
AO353_19670 -1.3 -3.8 nicotinamidase compare
AO353_06720 -1.3 -2.1 NrdR family transcriptional regulator compare
AO353_27550 -1.3 -1.6 hypothetical protein compare
AO353_07525 -1.3 -8.0 biotin synthase compare
AO353_03150 -1.3 -3.0 peptidase M4 compare
AO353_03615 -1.2 -3.0 cold-shock protein compare
AO353_27380 -1.2 -1.0 pyocin R2, holin compare
AO353_03585 -1.2 -2.5 ATP-dependent DNA helicase RuvA compare
AO353_04175 -1.2 -4.3 glycerol uptake facilitator GlpF compare
AO353_02315 -1.2 -5.5 5-hydroxyisourate hydrolase conserved
AO353_02975 -1.2 -2.4 aspartate kinase compare
AO353_16940 -1.2 -4.6 deoxycytidine triphosphate deaminase compare
AO353_12665 -1.2 -2.5 glycosyl transferase compare
AO353_19530 -1.2 -1.5 quinohemoprotein amine dehydrogenase compare
AO353_24340 -1.2 -1.5 TetR family transcriptional regulator compare
AO353_13225 -1.2 -3.1 50S ribosomal protein L9 compare
AO353_21430 -1.2 -2.4 hypothetical protein compare
AO353_08115 -1.2 -4.1 energy transducer TonB compare
AO353_23785 -1.2 -2.2 hypothetical protein compare
AO353_00650 -1.2 -2.1 cytochrome biogenesis protein compare
AO353_20175 -1.1 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_22215 -1.1 -1.9 hypothetical protein compare
AO353_04520 -1.1 -3.6 elongation factor 4 compare
AO353_08780 -1.1 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_07555 -1.1 -3.3 glycine cleavage system protein R compare
AO353_08025 -1.1 -5.7 amino acid ABC transporter substrate-binding protein compare
AO353_18325 -1.1 -2.0 hypothetical protein compare
AO353_08880 -1.1 -2.3 exopolyphosphatase compare
AO353_18500 -1.1 -1.9 chemotaxis protein CheY compare
AO353_03815 -1.1 -2.1 heme utilization protein compare
AO353_26810 -1.0 -3.7 (2Fe-2S)-binding protein compare
AO353_03795 -1.0 -2.9 fumarate hydratase compare
AO353_09690 -1.0 -2.2 hypothetical protein compare
AO353_01080 -1.0 -5.7 hypothetical protein compare
AO353_20340 -1.0 -2.9 gamma-carboxygeranoyl-CoA hydratase compare
AO353_13140 -1.0 -4.4 tRNA dimethylallyltransferase compare
AO353_07315 -1.0 -1.5 rRNA methyltransferase compare
AO353_10455 -1.0 -1.7 tRNA modification GTPase MnmE compare
AO353_02640 -1.0 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_10430 -1.0 -2.2 chromosome partitioning protein ParB compare
AO353_19610 -1.0 -2.4 hypothetical protein compare
AO353_15480 -1.0 -2.3 hypothetical protein compare
AO353_04565 -1.0 -3.5 nucleoid-associated protein compare
AO353_17885 -1.0 -1.2 hypothetical protein compare
AO353_02335 -1.0 -4.1 ureidoglycolate hydrolase compare
AO353_02720 -0.9 -3.1 cysteine synthase compare
AO353_19180 -0.9 -2.7 GAF domain-containing protein compare
AO353_20835 -0.9 -3.1 Ribokinase (EC 2.7.1.15) (from data) compare
AO353_10435 -0.9 -5.2 chromosome partitioning protein compare
AO353_24255 -0.9 -2.9 hypothetical protein compare
AO353_14740 -0.9 -2.9 GTP-binding protein compare
AO353_20660 -0.9 -2.6 pseudouridine synthase compare
AO353_20860 -0.9 -1.7 hypothetical protein compare
AO353_24830 -0.9 -2.7 enoyl-CoA hydratase compare
AO353_07355 -0.9 -4.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_16740 -0.9 -1.8 phage tail protein compare
AO353_04090 -0.9 -1.5 leucyl-tRNA synthetase compare
AO353_23215 -0.9 -2.7 calpastatin compare
AO353_12935 -0.9 -2.9 glycosyltransferase compare
AO353_05060 -0.9 -2.5 pressure-regulated protein compare
AO353_10630 -0.9 -3.1 16S rRNA methyltransferase compare
AO353_09405 -0.9 -3.3 type VI secretion protein compare
AO353_02570 -0.9 -2.1 hypothetical protein compare
AO353_05105 -0.9 -5.3 histidinol-phosphate aminotransferase compare
AO353_09155 -0.9 -4.6 amino acid dehydrogenase compare
AO353_11530 -0.9 -4.0 diguanylate cyclase compare
AO353_00750 -0.9 -3.1 GntR family transcriptional regulator compare
AO353_22025 -0.9 -1.5 iron-sulfur cluster repair di-iron protein compare
AO353_10440 -0.9 -3.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_21830 -0.9 -6.0 chemotaxis protein CheY compare
AO353_24915 -0.8 -1.7 hypothetical protein compare
AO353_16795 -0.8 -2.6 lysozyme compare
AO353_03420 -0.8 -2.7 phosphogluconate dehydratase compare
AO353_09265 -0.8 -2.1 hypothetical protein compare
AO353_28495 -0.8 -1.9 hypothetical protein compare
AO353_03100 -0.8 -1.9 XRE family transcriptional regulator compare
AO353_09060 -0.8 -1.6 hypothetical protein compare
AO353_15265 -0.8 -2.9 peptidase compare
AO353_12080 -0.8 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_18775 -0.8 -3.6 flagellar biosynthesis protein FlhF compare
AO353_15250 -0.8 -2.0 cytochrome B compare
AO353_18130 -0.8 -1.8 hypothetical protein compare
AO353_00740 -0.8 -3.9 molybdenum cofactor sulfurylase compare
AO353_14340 -0.8 -2.2 phospholipid-binding protein compare
AO353_28700 -0.8 -2.1 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source Inosine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Inosine across organisms