Experiment set5IT035 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS04605 -8.7 -3.2 cobalt ECF transporter T component CbiQ compare
MMP_RS05500 -8.0 -6.1 2-isopropylmalate synthase compare
MMP_RS07845 -7.3 -2.1 LL-diaminopimelate aminotransferase compare
MMP_RS03450 -7.1 -2.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS04620 -6.9 -10.6 cobalt transporter CbiM compare
MMP_RS04615 -6.8 -2.9 PDGLE domain-containing protein compare
MMP_RS01455 -6.8 -5.0 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06270 -6.3 -3.5 TIGR00300 family protein compare
MMP_RS06375 -5.9 -4.0 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS04215 -5.9 -6.2 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06350 -5.8 -4.5 HesA/MoeB/ThiF family protein compare
MMP_RS07345 -5.7 -3.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS08105 -5.5 -5.7 6-carboxyhexanoate--CoA ligase compare
MMP_RS04685 -5.4 -2.4 DUF126 domain-containing protein compare
MMP_RS06370 -5.4 -3.3 biotin synthase BioB compare
MMP_RS05080 -5.4 -9.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS02135 -5.4 -3.9 DUF5612 domain-containing protein compare
MMP_RS06400 -5.4 -1.5 4Fe-4S binding protein compare
MMP_RS05925 -5.4 -2.8 small nuclear ribonucleoprotein compare
MMP_RS01795 -5.3 -1.5 methanogenesis marker 6 protein compare
MMP_RS05100 -5.3 -16.0 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS01020 -5.3 -0.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03445 -5.3 -0.9 methanogenesis marker 17 protein compare
MMP_RS06120 -5.2 -1.7 UPF0147 family protein compare
MMP_RS00130 -5.2 -0.8 nickel-responsive transcriptional regulator NikR compare
MMP_RS05930 -5.1 -1.8 3-isopropylmalate dehydratase large subunit compare
MMP_RS04710 -5.0 -1.4 hypothetical protein compare
MMP_RS01175 -5.0 -3.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS02280 -5.0 -0.8 DUF211 domain-containing protein compare
MMP_RS08100 -5.0 -5.8 8-amino-7-oxononanoate synthase compare
MMP_RS07185 -5.0 -10.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06625 -4.9 -1.6 DNA primase compare
MMP_RS07355 -4.9 -0.8 transcription factor S compare
MMP_RS07630 -4.8 -1.4 ATP-binding cassette domain-containing protein compare
MMP_RS04500 -4.8 -13.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06975 -4.8 -1.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS05075 -4.7 -14.5 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS08460 -4.7 -1.9 proteasome-activating nucleotidase compare
MMP_RS03600 -4.6 -1.7 triose-phosphate isomerase compare
MMP_RS03435 -4.6 -1.5 ketol-acid reductoisomerase compare
MMP_RS05095 -4.6 -4.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS06730 -4.6 -1.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS04790 -4.6 -9.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS05515 -4.5 -3.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS05070 -4.5 -6.5 4Fe-4S dicluster domain-containing protein compare
MMP_RS03580 -4.5 -2.9 signal recognition particle-docking protein FtsY compare
MMP_RS05065 -4.5 -4.0 CooT family nickel-binding protein compare
MMP_RS07390 -4.5 -1.8 cell division protein FtsZ compare
MMP_RS05060 -4.4 -7.8 AAA family ATPase compare
MMP_RS03960 -4.4 -0.7 hypothetical protein compare
MMP_RS07635 -4.4 -6.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03025 -4.4 -5.2 molybdenum cofactor guanylyltransferase compare
MMP_RS04775 -4.3 -2.9 adenosylhomocysteinase compare
MMP_RS05085 -4.3 -7.5 AAA family ATPase compare
MMP_RS03035 -4.3 -3.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02195 -4.2 -3.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06475 -4.2 -3.8 FAD-dependent oxidoreductase compare
MMP_RS05090 -4.1 -5.6 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS07195 -4.1 -7.2 M20 family metallo-hydrolase compare
MMP_RS01005 -4.1 -1.0 riboflavin synthase compare
MMP_RS03700 -4.1 -8.7 sodium:proton antiporter compare
MMP_RS07555 -4.1 -0.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS08745 -4.1 -5.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07750 -4.1 -3.6 DUF357 domain-containing protein compare
MMP_RS03015 -4.0 -7.0 GTP 3' 8-cyclase MoaA compare
MMP_RS05265 -4.0 -1.6 2-isopropylmalate synthase compare
MMP_RS08095 -4.0 -5.7 dethiobiotin synthase compare
MMP_RS05425 -4.0 -4.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06925 -3.9 -1.9 ribonuclease VapC4 compare
MMP_RS06285 -3.9 -1.9 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06355 -3.9 -1.9 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS02245 -3.8 -2.8 hypothetical protein compare
MMP_RS08210 -3.8 -1.9 phosphatidylglycerophosphatase A compare
MMP_RS01800 -3.8 -3.1 TIGR00303 family protein compare
MMP_RS06230 -3.8 -1.6 helix-turn-helix domain-containing protein compare
MMP_RS00300 -3.8 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03205 -3.7 -0.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01610 -3.7 -2.2 hypothetical protein compare
MMP_RS01905 -3.7 -14.8 glycosyltransferase compare
MMP_RS08650 -3.7 -2.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS09020 -3.7 -1.4 hypothetical protein compare
MMP_RS05055 -3.7 -9.2 DUF166 domain-containing protein compare
MMP_RS00305 -3.7 -1.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS07755 -3.7 -0.8 DUF555 domain-containing protein compare
MMP_RS08720 -3.6 -1.2 4Fe-4S binding protein compare
MMP_RS07380 -3.6 -1.8 transcription elongation factor Spt5 compare
MMP_RS07955 -3.6 -4.3 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS06895 -3.6 -1.4 selenocysteine-specific translation elongation factor compare
MMP_RS07200 -3.6 -6.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05555 -3.6 -1.2 DUF4040 domain-containing protein compare
MMP_RS03475 -3.5 -0.6 hypothetical protein compare
MMP_RS01650 -3.5 -0.8 sulfurtransferase TusA family protein compare
MMP_RS00750 -3.5 -2.0 fumarate hydratase compare
MMP_RS01225 -3.5 -4.0 DUF5379 domain-containing protein compare
MMP_RS07730 -3.5 -1.8 pyruvate synthase subunit beta compare
MMP_RS01900 -3.5 -14.9 hypothetical protein compare
MMP_RS03640 -3.5 -2.9 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06670 -3.5 -5.5 glucose-6-phosphate isomerase compare
MMP_RS06940 -3.5 -3.5 polyprenyl diphosphate synthase compare
MMP_RS04780 -3.5 -2.7 ribonuclease P compare
MMP_RS07075 -3.5 -3.4 phosphomannomutase/phosphoglucomutase compare
MMP_RS07600 -3.4 -2.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06295 -3.4 -5.6 methanogenesis marker 14 protein compare
MMP_RS02010 -3.4 -6.8 PHP domain-containing protein compare
MMP_RS02145 -3.4 -8.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS02900 -3.4 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS00515 -3.4 -0.8 DUF655 domain-containing protein compare
MMP_RS03390 -3.4 -5.0 malate dehydrogenase compare
MMP_RS06340 -3.4 -5.3 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00110 -3.4 -2.6 hypothetical protein compare
MMP_RS01865 -3.3 -1.1 GPR1/FUN34/YaaH family transporter compare
MMP_RS03145 -3.3 -4.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01725 -3.3 -3.0 class I SAM-dependent methyltransferase family protein compare
MMP_RS05845 -3.3 -1.4 tRNA-intron lyase compare
MMP_RS07005 -3.3 -0.5 4Fe-4S binding protein compare
MMP_RS01540 -3.3 -1.8 DUF504 domain-containing protein compare
MMP_RS08330 -3.2 -4.0 NADH-quinone oxidoreductase subunit H compare
MMP_RS08635 -3.2 -1.3 UbiA family prenyltransferase compare
MMP_RS08715 -3.2 -1.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07645 -3.2 -3.1 aldehyde dehydrogenase family protein compare
MMP_RS06020 -3.2 -4.0 archaeoflavoprotein AfpA compare
MMP_RS00685 -3.2 -3.0 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01910 -3.2 -8.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS03400 -3.2 -2.1 archease compare
MMP_RS06315 -3.1 -0.7 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS02345 -3.1 -2.8 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06630 -3.1 -0.7 UPF0058 family protein compare
MMP_RS01265 -3.1 -1.6 hypothetical protein compare
MMP_RS00695 -3.0 -0.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01880 -3.0 -6.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS07735 -3.0 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01830 -2.9 -1.2 tRNA-Val compare
MMP_RS01955 -2.9 -2.1 hypothetical protein compare
MMP_RS03315 -2.9 -1.1 ferrous iron transport protein A compare
MMP_RS08440 -2.9 -1.8 cell division protein SepF compare
MMP_RS01925 -2.8 -6.8 DUF1616 domain-containing protein compare
MMP_RS01890 -2.8 -3.3 nucleotide sugar dehydrogenase compare
MMP_RS05640 -2.8 -5.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS07625 -2.7 -2.6 cobalt ECF transporter T component CbiQ compare
MMP_RS07710 -2.6 -5.1 cell division protein FtsZ compare
MMP_RS06105 -2.6 -6.8 hydrogenase maturation peptidase HycI compare
MMP_RS01220 -2.6 -5.2 hypothetical protein compare
MMP_RS06130 -2.6 -2.3 peptidylprolyl isomerase compare
MMP_RS03140 -2.6 -7.1 hypothetical protein compare
MMP_RS05550 -2.6 -0.6 cation:proton antiporter compare
MMP_RS01500 -2.6 -1.5 CBS domain-containing protein compare
MMP_RS01885 -2.5 -6.0 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS01525 -2.5 -1.2 nucleoside-diphosphate kinase compare
MMP_RS06310 -2.5 -3.2 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS06155 -2.5 -1.7 DUF4186 domain-containing protein compare
MMP_RS02875 -2.5 -5.3 chorismate pyruvate-lyase family protein compare
MMP_RS07365 -2.4 -6.4 2-phosphoglycerate kinase compare
MMP_RS07605 -2.4 -1.8 diadenylate cyclase compare
MMP_RS01665 -2.4 -2.7 DUF2111 domain-containing protein compare
MMP_RS07525 -2.4 -5.6 4Fe-4S binding protein compare
MMP_RS02240 -2.4 -2.1 methanogenesis marker 7 protein compare
MMP_RS00895 -2.4 -2.3 hypothetical protein compare
MMP_RS07620 -2.3 -3.4 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS02190 -2.3 -1.9 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS08435 -2.3 -1.3 Era-like GTP-binding protein compare
MMP_RS01960 -2.3 -0.5 hypothetical protein compare
MMP_RS01970 -2.3 -9.0 TIGR04279 domain-containing protein compare
MMP_RS07425 -2.3 -3.5 GTP-binding protein compare
MMP_RS06725 -2.2 -6.5 hypothetical protein compare
MMP_RS07435 -2.2 -1.3 GMP synthase subunit A compare
MMP_RS08300 -2.1 -0.8 metal-sulfur cluster assembly factor compare
MMP_RS01915 -2.1 -8.9 DUF354 domain-containing protein compare
MMP_RS01920 -2.1 -9.1 glycosyltransferase family 2 protein compare
MMP_RS02885 -2.1 -9.9 molybdopterin biosynthesis protein compare
MMP_RS01700 -2.0 -0.7 dihydroxy-acid dehydratase compare
MMP_RS08165 -2.0 -1.7 phosphoglycerate dehydrogenase compare
MMP_RS08595 -2.0 -0.7 flagellar protein C compare
MMP_RS01380 -2.0 -2.5 PHP domain-containing protein compare
MMP_RS00985 -2.0 -2.8 CDC48 family AAA ATPase compare
MMP_RS08240 -2.0 -3.5 methanogenesis marker 16 metalloprotein compare
MMP_RS07615 -2.0 -3.6 energy-coupling factor ABC transporter permease compare
MMP_RS01385 -2.0 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07875 -2.0 -2.8 hypothetical protein compare
MMP_RS00810 -2.0 -4.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS08320 -2.0 -3.6 molybdopterin molybdotransferase MoeA compare
MMP_RS07385 -1.9 -1.9 protein translocase SEC61 complex subunit gamma compare
MMP_RS01545 -1.9 -0.5 CBS domain-containing protein compare
MMP_RS02340 -1.9 -1.1 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01975 -1.8 -9.5 hypothetical protein compare
MMP_RS01600 -1.8 -1.6 50S ribosomal protein L15e compare
MMP_RS04720 -1.7 -1.5 DedA family protein compare
MMP_RS01895 -1.7 -7.1 flippase compare
MMP_RS01240 -1.7 -1.2 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS04785 -1.7 -5.5 hypothetical protein compare
MMP_RS01250 -1.7 -2.4 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS05875 -1.7 -3.4 hydroxyethylthiazole kinase compare
MMP_RS04875 -1.7 -4.1 energy-converting hydrogenase B subunit P compare
MMP_RS08820 -1.6 -3.3 hypothetical protein compare
MMP_RS07575 -1.6 -2.0 RNA ligase partner protein compare
MMP_RS00315 -1.6 -3.3 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS03095 -1.6 -3.3 diphthine synthase compare
MMP_RS08645 -1.6 -3.5 UPF0179 family protein compare
MMP_RS08335 -1.6 -3.3 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS08445 -1.5 -2.2 DUF2099 family protein compare
MMP_RS07445 -1.5 -2.4 helix-turn-helix domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Mc_vitamins across organisms