Experiment set5IT034 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with 4-Hydroxyacetophenone 0.00025 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3842 -5.3 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3666 -4.8 -3.3 InaA protein compare
Pf6N2E2_3782 -4.4 -3.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5027 -4.1 -12.4 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_1617 -3.9 -1.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_5337 -3.7 -4.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5527 -3.7 -2.5 Cold shock protein CspC compare
Pf6N2E2_2311 -3.7 -6.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3941 -3.6 -2.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2080 -3.5 -2.4 hypothetical protein compare
Pf6N2E2_5150 -3.4 -5.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2447 -3.4 -5.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2755 -3.4 -2.3 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5321 -3.4 -9.8 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2752 -3.3 -6.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5319 -3.3 -8.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2574 -3.3 -2.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_4187 -3.2 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3839 -3.2 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5242 -3.2 -2.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3251 -3.1 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2313 -3.1 -3.7 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4584 -3.1 -2.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3665 -3.0 -1.5 serine/threonine protein kinase compare
Pf6N2E2_4451 -3.0 -6.7 FIG139438: lipoprotein B compare
Pf6N2E2_3612 -3.0 -2.1 HflK protein compare
Pf6N2E2_3461 -3.0 -2.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5178 -3.0 -2.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2384 -2.9 -4.4 CmpX compare
Pf6N2E2_2473 -2.9 -2.0 Major outer membrane lipoprotein I compare
Pf6N2E2_5338 -2.9 -7.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3610 -2.9 -6.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3253 -2.9 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5318 -2.8 -17.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2527 -2.8 -5.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2274 -2.8 -5.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2310 -2.8 -9.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5339 -2.8 -6.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3171 -2.8 -1.9 hypothetical protein compare
Pf6N2E2_2261 -2.8 -4.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_5006 -2.8 -7.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5320 -2.8 -8.0 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3258 -2.7 -1.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3834 -2.7 -7.8 Lipoprotein NlpD compare
Pf6N2E2_2318 -2.6 -8.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5727 -2.6 -7.0 FIG00955360: hypothetical protein compare
Pf6N2E2_3260 -2.6 -3.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4611 -2.6 -3.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2218 -2.6 -4.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2219 -2.5 -2.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4276 -2.5 -5.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5014 -2.5 -1.7 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3841 -2.5 -4.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4369 -2.4 -1.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4372 -2.4 -5.3 FIG00460773: hypothetical protein compare
Pf6N2E2_3252 -2.4 -6.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_760 -2.4 -10.8 Na+/H+ antiporter NhaB compare
Pf6N2E2_3770 -2.4 -2.8 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3257 -2.3 -2.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3303 -2.3 -4.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3783 -2.3 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2189 -2.3 -4.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4159 -2.3 -3.8 Cytochrome c4 compare
Pf6N2E2_3658 -2.3 -6.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2317 -2.3 -3.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2706 -2.2 -3.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3607 -2.2 -8.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3940 -2.2 -8.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5494 -2.2 -5.2 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4585 -2.2 -10.5 Cell division protein FtsX compare
Pf6N2E2_5956 -2.2 -6.1 FIG004453: protein YceG like compare
Pf6N2E2_4764 -2.2 -5.6 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_5317 -2.1 -10.7 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_5536 -2.1 -2.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3617 -2.1 -5.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_144 -2.1 -12.9 Uncharacterized protein YtfM precursor compare
Pf6N2E2_282 -2.1 -1.8 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4987 -2.1 -1.4 MaoC-like domain protein compare
Pf6N2E2_3786 -2.1 -3.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_2938 -2.0 -4.3 Outer membrane lipoprotein compare
Pf6N2E2_2152 -2.0 -2.0 hypothetical protein compare
Pf6N2E2_4607 -2.0 -4.2 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_5316 -2.0 -1.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2282 -2.0 -3.3 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2428 -2.0 -2.9 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_5068 -2.0 -9.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_4205 -2.0 -3.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4391 -1.9 -5.4 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_4759 -1.9 -10.0 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2312 -1.9 -2.3 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5671 -1.9 -3.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_145 -1.9 -6.0 putative exported protein compare
Pf6N2E2_6058 -1.8 -4.9 FIG139976: hypothetical protein compare
Pf6N2E2_3282 -1.8 -2.4 FIG005080: Possible exported protein compare
Pf6N2E2_3198 -1.8 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5733 -1.8 -4.5 NLP/P60 family protein compare
Pf6N2E2_4761 -1.8 -7.7 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5647 -1.8 -4.9 Transcriptional regulator, TetR family compare
Pf6N2E2_5523 -1.8 -3.6 Small-conductance mechanosensitive channel compare
Pf6N2E2_3833 -1.8 -5.2 hypothetical protein compare
Pf6N2E2_2201 -1.8 -3.5 Transmembrane regulator protein PrtR compare
Pf6N2E2_4638 -1.7 -2.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_828 -1.7 -4.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5155 -1.7 -2.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1625 -1.7 -3.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2278 -1.6 -10.9 Transcription-repair coupling factor compare
Pf6N2E2_5705 -1.6 -2.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2552 -1.6 -5.1 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4763 -1.6 -5.5 Biotin synthesis protein BioC compare
Pf6N2E2_3271 -1.6 -2.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1056 -1.6 -0.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2487 -1.6 -1.3 FIG00956090: hypothetical protein compare
Pf6N2E2_2127 -1.5 -3.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2320 -1.5 -2.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2217 -1.5 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3270 -1.5 -3.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4631 -1.5 -5.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_1626 -1.5 -5.3 Putative ATP-binding component of a transport system compare
Pf6N2E2_2258 -1.5 -7.1 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5508 -1.4 -2.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3285 -1.4 -3.7 Rod shape-determining protein MreD compare
Pf6N2E2_5172 -1.4 -2.3 FOG: TPR repeat compare
Pf6N2E2_5406 -1.4 -2.1 FIG00958224: hypothetical protein compare
Pf6N2E2_5331 -1.4 -4.3 ATPase, AFG1 family compare
Pf6N2E2_2513 -1.4 -2.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2340 -1.4 -3.2 Transcriptional regulator, GntR family compare
Pf6N2E2_5328 -1.4 -2.8 FIG00958649: hypothetical protein compare
Pf6N2E2_5069 -1.4 -4.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4417 -1.4 -3.1 Protein of unknown function DUF484 compare
Pf6N2E2_1298 -1.4 -3.3 Xanthine transporter,putative compare
Pf6N2E2_451 -1.4 -2.8 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4047 -1.4 -4.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2200 -1.4 -1.5 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_445 -1.4 -3.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3611 -1.3 -1.2 HflC protein compare
Pf6N2E2_2124 -1.3 -1.9 Mg(2+) transport ATPase protein C compare
Pf6N2E2_5342 -1.3 -1.9 21 kDa hemolysin precursor compare
Pf6N2E2_3460 -1.3 -1.5 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3521 -1.3 -5.3 Sensor histidine kinase/response regulator compare
Pf6N2E2_5730 -1.3 -2.1 FIG00954480: hypothetical protein compare
Pf6N2E2_5520 -1.3 -4.3 Sensory box histidine kinase compare
Pf6N2E2_2586 -1.3 -2.0 Hpt domain protein compare
Pf6N2E2_2509 -1.3 -1.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2381 -1.3 -3.2 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4773 -1.3 -1.1 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1876 -1.3 -2.2 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_302 -1.3 -3.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2367 -1.3 -2.0 hypothetical protein compare
Pf6N2E2_2193 -1.3 -4.5 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_6063 -1.3 -5.0 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_1875 -1.3 -2.2 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_5703 -1.2 -2.9 outer membrane protein H1 compare
Pf6N2E2_2073 -1.2 -5.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4678 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_4999 -1.2 -4.8 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_2871 -1.2 -2.2 FIG00954271: hypothetical protein compare
Pf6N2E2_1089 -1.2 -2.3 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3908 -1.2 -4.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_6064 -1.2 -3.9 2-methylaconitate isomerase compare
Pf6N2E2_2714 -1.2 -2.1 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_5476 -1.2 -2.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_4889 -1.2 -3.4 Putative transport protein compare
Pf6N2E2_3349 -1.2 -2.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1502 -1.2 -1.4 Two-component system regulatory protein compare
Pf6N2E2_3568 -1.2 -1.6 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_3847 -1.2 -2.3 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2514 -1.2 -3.0 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_6059 -1.2 -2.9 FIG008443: hypothetical protein compare
Pf6N2E2_945 -1.2 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_600 -1.1 -2.6 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_58 -1.1 -1.2 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2281 -1.1 -1.7 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_5250 -1.1 -2.6 Restriction endonuclease compare
Pf6N2E2_3096 -1.1 -1.3 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_1110 -1.1 -3.5 FIG00964414: hypothetical protein compare
Pf6N2E2_1545 -1.1 -2.9 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_723 -1.1 -2.6 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_5906 -1.1 -2.3 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_4279 -1.1 -5.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2869 -1.1 -0.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2640 -1.1 -1.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_417 -1.1 -2.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_5668 -1.1 -2.6 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_1987 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_1147 -1.0 -1.7 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5780 -1.0 -5.0 Periplasmic protease compare
Pf6N2E2_2114 -1.0 -1.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5245 -1.0 -4.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3199 -1.0 -3.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_3791 -1.0 -4.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3792 -1.0 -2.8 Glucans biosynthesis protein G precursor compare
Pf6N2E2_4072 -1.0 -3.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5965 -1.0 -2.7 transcriptional regulator compare
Pf6N2E2_2013 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_5291 -1.0 -7.4 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2391 -1.0 -4.7 FIG137360: hypothetical protein compare
Pf6N2E2_1178 -1.0 -2.1 3-oxoacyl-(acyl-carrier-protein) synthase compare
Pf6N2E2_953 -1.0 -1.5 FIG00958851: hypothetical protein compare
Pf6N2E2_5153 -1.0 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_1131 -1.0 -3.3 RNA polymerase sigma-70 factor, ECF subfamily compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress 4-Hydroxyacetophenone across organisms