Experiment set5IT034 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Uridine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_07220 -5.1 -6.0 anthranilate synthase compare
AO353_26580 -5.0 -10.2 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) conserved
AO353_13070 -4.9 -8.1 phosphoserine phosphatase compare
AO353_05115 -4.7 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13165 -4.6 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20625 -4.5 -4.4 3-isopropylmalate dehydratase compare
AO353_12150 -4.4 -6.7 histidine kinase compare
AO353_12070 -4.3 -9.7 imidazoleglycerol-phosphate dehydratase compare
AO353_20635 -4.2 -14.7 3-isopropylmalate dehydrogenase compare
AO353_12365 -4.2 -5.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_12520 -4.2 -13.4 glutamate synthase compare
AO353_00310 -4.2 -13.1 transaldolase compare
AO353_07230 -4.2 -18.7 anthranilate synthase compare
AO353_08185 -4.1 -11.3 methionine biosynthesis protein MetW compare
AO353_12085 -4.1 -10.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12145 -4.1 -4.8 nitrogen regulation protein NR(I) compare
AO353_26560 -4.0 -9.7 Beta-ureidopropionase (EC 3.5.1.6) (from data) conserved
AO353_22945 -4.0 -16.9 glycogen branching protein compare
AO353_20665 -4.0 -13.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_06090 -3.9 -13.7 LysR family transcriptional regulator conserved
AO353_02075 -3.9 -12.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20620 -3.9 -8.6 isopropylmalate isomerase compare
AO353_12515 -3.9 -24.0 glutamate synthase compare
AO353_02040 -3.9 -4.6 integration host factor subunit beta compare
AO353_12090 -3.9 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_02070 -3.9 -8.6 prephenate dehydratase compare
AO353_08345 -3.8 -10.2 dihydroxy-acid dehydratase compare
AO353_16450 -3.8 -15.8 protein-PII uridylyltransferase compare
AO353_06085 -3.8 -14.1 omega amino acid--pyruvate aminotransferase conserved
AO353_26570 -3.7 -8.3 Dihydropyrimidinase (EC 3.5.2.2) (from data) conserved
AO353_05110 -3.7 -13.1 histidinol dehydrogenase compare
AO353_12500 -3.7 -2.5 shikimate kinase compare
AO353_26565 -3.7 -9.1 nitrate reductase conserved
AO353_14505 -3.7 -14.6 ketol-acid reductoisomerase compare
AO353_20695 -3.6 -6.9 O-succinylhomoserine sulfhydrylase compare
AO353_02710 -3.6 -14.0 (p)ppGpp synthetase compare
AO353_12075 -3.6 -10.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08180 -3.6 -15.0 homoserine O-acetyltransferase compare
AO353_04155 -3.5 -14.2 ornithine carbamoyltransferase compare
AO353_07215 -3.5 -9.6 anthranilate phosphoribosyltransferase compare
AO353_21625 -3.5 -4.1 Fe/S biogenesis protein NfuA compare
AO353_26575 -3.5 -7.1 dihydropyrimidine dehydrogenase conserved
AO353_08685 -3.5 -8.6 N-acetylglutamate synthase compare
AO353_10710 -3.4 -5.3 tryptophan synthase subunit beta compare
AO353_14495 -3.4 -13.2 acetolactate synthase 3 catalytic subunit compare
AO353_08475 -3.3 -11.5 phosphoserine phosphatase compare
AO353_09240 -3.3 -2.3 acetylglutamate kinase compare
AO353_08885 -3.3 -16.7 polyphosphate kinase compare
AO353_07210 -3.2 -6.5 indole-3-glycerol-phosphate synthase compare
AO353_04105 -3.2 -9.7 argininosuccinate synthase compare
AO353_14500 -3.2 -9.2 acetolactate synthase 3 regulatory subunit compare
AO353_06495 -3.2 -7.7 gamma-glutamyl phosphate reductase compare
AO353_09155 -3.1 -10.2 amino acid dehydrogenase compare
AO353_15925 -3.1 -11.8 2-isopropylmalate synthase compare
AO353_08015 -3.0 -9.2 5,10-methylenetetrahydrofolate reductase compare
AO353_10025 -2.9 -15.9 pyruvate carboxylase subunit B compare
AO353_14400 -2.9 -5.5 Fis family transcriptional regulator compare
AO353_09000 -2.8 -6.3 argininosuccinate lyase compare
AO353_10030 -2.8 -11.8 pyruvate carboxylase subunit A compare
AO353_00495 -2.8 -3.8 DNA topoisomerase I compare
AO353_08510 -2.8 -7.1 3-phosphoglycerate dehydrogenase compare
AO353_20175 -2.7 -5.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_09060 -2.7 -4.1 hypothetical protein compare
AO353_12360 -2.7 -10.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_03360 -2.6 -10.5 glucose-6-phosphate dehydrogenase compare
AO353_00825 -2.6 -5.2 porin compare
AO353_14370 -2.6 -9.0 glucose-6-phosphate isomerase compare
AO353_07315 -2.6 -3.0 rRNA methyltransferase compare
AO353_20095 -2.5 -6.8 histidine kinase compare
AO353_03580 -2.4 -4.6 ATP-dependent DNA helicase RuvB compare
AO353_10035 -2.4 -8.2 LysR family transcriptional regulator compare
AO353_07515 -2.4 -3.1 transporter compare
AO353_14420 -2.4 -5.8 molecular chaperone DnaK compare
AO353_14115 -2.3 -8.1 gamma-glutamyl kinase compare
AO353_02720 -2.2 -6.1 cysteine synthase compare
AO353_07155 -2.2 -6.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_06040 -2.2 -4.7 exodeoxyribonuclease V subunit alpha compare
AO353_02250 -2.2 -4.2 chorismate synthase compare
AO353_08165 -2.1 -3.9 pyrroline-5-carboxylate reductase compare
AO353_19090 -2.1 -3.1 MarR family transcriptional regulator compare
AO353_10670 -2.1 -7.2 shikimate dehydrogenase compare
AO353_03585 -2.1 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_07645 -2.0 -2.2 sarcosine oxidase subunit gamma compare
AO353_01375 -1.9 -6.3 phosphate acyltransferase compare
AO353_07525 -1.9 -10.9 biotin synthase compare
AO353_12115 -1.9 -3.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_27650 -1.8 -5.5 cell division protein FtsK compare
AO353_08115 -1.8 -6.8 energy transducer TonB compare
AO353_12420 -1.8 -4.2 predicted FeS cluster maintenance protein (from data) compare
AO353_04220 -1.8 -4.8 chemotaxis protein CheY compare
AO353_10430 -1.7 -3.1 chromosome partitioning protein ParB compare
AO353_06045 -1.7 -6.4 exodeoxyribonuclease V subunit beta compare
AO353_15295 -1.7 -4.9 division/cell wall cluster transcriptional repressor MraZ compare
AO353_26285 -1.6 -3.3 hypothetical protein compare
AO353_05690 -1.6 -3.9 SsrA-binding protein compare
AO353_08980 -1.6 -3.1 heme biosynthesis operon protein HemX compare
AO353_08465 -1.6 -10.2 phosphoenolpyruvate-protein phosphotransferase compare
AO353_03420 -1.6 -5.0 phosphogluconate dehydratase compare
AO353_02280 -1.5 -1.9 DNA mismatch repair protein MutS compare
AO353_11850 -1.5 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14150 -1.5 -1.8 peptidylprolyl isomerase compare
AO353_09560 -1.5 -1.6 type VI secretion protein compare
AO353_08265 -1.5 -5.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_24255 -1.5 -4.0 hypothetical protein compare
AO353_13140 -1.5 -5.8 tRNA dimethylallyltransferase compare
AO353_07105 -1.5 -1.5 biotin--protein ligase compare
AO353_04355 -1.5 -2.5 homoserine dehydrogenase compare
AO353_10725 -1.5 -1.6 dodecin flavoprotein compare
AO353_13100 -1.4 -1.7 GTPase RsgA compare
AO353_08780 -1.3 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
AO353_13640 -1.3 -3.2 histidine kinase compare
AO353_03615 -1.3 -3.3 cold-shock protein compare
AO353_21630 -1.3 -2.7 precorrin-4 C11-methyltransferase compare
AO353_05420 -1.3 -1.9 peptide chain release factor 3 compare
AO353_06050 -1.3 -5.4 exodeoxyribonuclease V subunit gamma compare
AO353_09070 -1.3 -8.2 ammonia channel protein compare
AO353_03590 -1.3 -2.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_18780 -1.2 -4.6 cobyrinic acid a,c-diamide synthase compare
AO353_14990 -1.2 -2.1 hypothetical protein compare
AO353_24130 -1.2 -2.2 hypothetical protein compare
AO353_10705 -1.2 -2.7 tryptophan synthase subunit alpha compare
AO353_02685 -1.2 -3.1 phosphoribosylglycinamide formyltransferase compare
AO353_10435 -1.2 -6.9 chromosome partitioning protein compare
AO353_08470 -1.2 -2.9 RNA pyrophosphohydrolase compare
AO353_03515 -1.2 -1.4 cold-shock protein compare
AO353_00750 -1.1 -3.0 GntR family transcriptional regulator compare
AO353_06525 -1.1 -2.3 dehydratase compare
AO353_23955 -1.1 -2.7 RND transporter compare
AO353_12460 -1.1 -5.1 malate dehydrogenase compare
AO353_04055 -1.1 -1.6 methionine--tRNA ligase compare
AO353_08045 -1.1 -8.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_14595 -1.1 -5.6 carbonate dehydratase compare
AO353_10455 -1.1 -1.6 tRNA modification GTPase MnmE compare
AO353_11340 -1.1 -1.7 MarR family transcriptional regulator compare
AO353_20170 -1.1 -3.5 trigger factor compare
AO353_02810 -1.1 -4.4 histidine kinase compare
AO353_03020 -1.1 -4.8 arginine N-succinyltransferase compare
AO353_13130 -1.1 -3.0 N-acetylmuramoyl-L-alanine amidase compare
AO353_06455 -1.1 -2.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_01915 -1.0 -1.6 GlcG protein compare
AO353_15390 -1.0 -5.3 histidine kinase conserved
AO353_15385 -1.0 -2.0 hypothetical protein compare
AO353_11940 -1.0 -2.4 hypothetical protein compare
AO353_25585 -1.0 -1.9 argininosuccinate lyase compare
AO353_18135 -1.0 -1.8 hypothetical protein compare
AO353_07505 -1.0 -5.1 dethiobiotin synthetase compare
AO353_07510 -1.0 -5.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_16940 -1.0 -3.7 deoxycytidine triphosphate deaminase compare
AO353_09040 -1.0 -1.4 diaminopimelate epimerase compare
AO353_05225 -1.0 -7.1 hypothetical protein compare
AO353_01550 -1.0 -2.7 hypothetical protein compare
AO353_03415 -1.0 -4.0 glucokinase compare
AO353_00540 -1.0 -3.2 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_12395 -1.0 -1.8 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_11165 -1.0 -5.1 hypothetical protein compare
AO353_20185 -1.0 -4.6 DNA-binding protein compare
AO353_13160 -1.0 -2.0 membrane protease HflC compare
AO353_16195 -1.0 -1.9 DNA mismatch repair protein MutT compare
AO353_15485 -1.0 -4.1 phosphate-starvation-inducible protein PsiE compare
AO353_08880 -0.9 -1.8 exopolyphosphatase compare
AO353_08130 -0.9 -2.1 uracil phosphoribosyltransferase compare
AO353_22305 -0.9 -2.0 LysR family transcriptional regulator compare
AO353_09010 -0.9 -2.1 hypothetical protein compare
AO353_11530 -0.9 -4.6 diguanylate cyclase compare
AO353_16495 -0.9 -3.8 zinc metallopeptidase RseP compare
AO353_09720 -0.9 -1.1 hypothetical protein compare
AO353_02940 -0.9 -2.7 DNA-binding protein compare
AO353_16385 -0.9 -4.0 hypothetical protein compare
AO353_15725 -0.9 -2.9 hypothetical protein compare
AO353_09150 -0.9 -2.1 cytochrome C2 compare
AO353_14930 -0.9 -1.7 GntR family transcriptional regulator compare
AO353_07250 -0.9 -2.0 polyamine ABC transporter permease compare
AO353_00975 -0.9 -2.1 hypothetical protein compare
AO353_11750 -0.9 -1.9 ATPase compare
AO353_09345 -0.9 -2.0 hypothetical protein compare
AO353_06080 -0.9 -6.4 methylmalonate-semialdehyde dehydrogenase compare
AO353_05280 -0.9 -1.6 4-carboxymuconolactone decarboxylase compare
AO353_10320 -0.9 -1.5 hypothetical protein compare
AO353_01780 -0.9 -5.4 heat-shock protein Hsp90 compare
AO353_13865 -0.9 -2.5 hypothetical protein compare
AO353_28485 -0.9 -2.9 LysR family transcriptional regulator compare
AO353_28295 -0.9 -2.3 GNAT family acetyltransferase compare
AO353_12080 -0.9 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_04500 -0.9 -1.8 DNA repair protein RecO compare
AO353_20510 -0.9 -1.8 amidase compare
AO353_07520 -0.9 -5.4 8-amino-7-oxononanoate synthase compare
AO353_15555 -0.9 -2.8 fumarylacetoacetase compare
AO353_02220 -0.8 -1.6 hypothetical protein compare
AO353_16955 -0.8 -3.8 succinylglutamate desuccinylase compare
AO353_13245 -0.8 -4.2 hypothetical protein compare
AO353_08485 -0.8 -5.9 threonine dehydratase compare
AO353_22360 -0.8 -2.2 ABC transporter ATP-binding protein compare
AO353_03630 -0.8 -5.7 porin compare
AO353_14060 -0.8 -2.1 hypothetical protein compare
AO353_07465 -0.8 -2.2 addiction module toxin RelE compare
AO353_20785 -0.8 -3.3 carbon storage regulator CsrA compare
AO353_02715 -0.8 -1.8 23S rRNA methyltransferase compare
AO353_07355 -0.8 -3.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_02020 -0.8 -2.8 hypothetical protein compare
AO353_27680 -0.8 -3.7 ATP-dependent Clp protease adaptor ClpS compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Uridine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Uridine across organisms