Experiment set5IT033 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Adenine hydrochloride hydrate nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_01375 -4.8 -9.2 phosphate acyltransferase compare
AO353_20695 -4.7 -8.5 O-succinylhomoserine sulfhydrylase compare
AO353_20665 -4.7 -10.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20635 -4.6 -12.5 3-isopropylmalate dehydrogenase compare
AO353_07220 -4.5 -8.0 anthranilate synthase compare
AO353_12085 -4.4 -9.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_05115 -4.3 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13070 -4.3 -8.3 phosphoserine phosphatase compare
AO353_14505 -4.3 -13.2 ketol-acid reductoisomerase compare
AO353_12070 -4.2 -9.9 imidazoleglycerol-phosphate dehydratase compare
AO353_08475 -4.1 -10.6 phosphoserine phosphatase compare
AO353_07230 -4.1 -18.7 anthranilate synthase compare
AO353_02070 -4.1 -7.8 prephenate dehydratase compare
AO353_10670 -4.0 -8.2 shikimate dehydrogenase compare
AO353_08185 -4.0 -11.5 methionine biosynthesis protein MetW compare
AO353_12515 -4.0 -22.5 glutamate synthase compare
AO353_12520 -3.9 -13.4 glutamate synthase compare
AO353_13165 -3.9 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12090 -3.8 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08345 -3.8 -10.2 dihydroxy-acid dehydratase compare
AO353_12150 -3.8 -7.3 histidine kinase compare
AO353_02075 -3.8 -12.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20620 -3.8 -9.1 isopropylmalate isomerase compare
AO353_04105 -3.7 -8.0 argininosuccinate synthase compare
AO353_08180 -3.7 -14.7 homoserine O-acetyltransferase compare
AO353_20625 -3.7 -6.1 3-isopropylmalate dehydratase compare
AO353_02325 -3.6 -6.5 OHCU decarboxylase conserved
AO353_05110 -3.6 -12.6 histidinol dehydrogenase compare
AO353_12500 -3.6 -2.5 shikimate kinase compare
AO353_12075 -3.6 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20540 -3.5 -9.2 aromatic amino acid aminotransferase compare
AO353_08685 -3.4 -8.9 N-acetylglutamate synthase compare
AO353_12360 -3.4 -9.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_12145 -3.4 -5.7 nitrogen regulation protein NR(I) compare
AO353_00310 -3.4 -11.9 transaldolase compare
AO353_07155 -3.4 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10710 -3.2 -5.0 tryptophan synthase subunit beta compare
AO353_02315 -3.2 -8.8 5-hydroxyisourate hydrolase conserved
AO353_08015 -3.2 -8.5 5,10-methylenetetrahydrofolate reductase compare
AO353_09000 -3.2 -5.7 argininosuccinate lyase compare
AO353_14495 -3.2 -13.5 acetolactate synthase 3 catalytic subunit compare
AO353_07210 -3.1 -6.6 indole-3-glycerol-phosphate synthase compare
AO353_14115 -3.1 -8.0 gamma-glutamyl kinase compare
AO353_02320 -3.1 -9.6 allantoinase compare
AO353_08510 -3.1 -6.6 3-phosphoglycerate dehydrogenase compare
AO353_16450 -3.1 -14.7 protein-PII uridylyltransferase compare
AO353_14500 -3.1 -9.0 acetolactate synthase 3 regulatory subunit compare
AO353_04155 -3.0 -14.1 ornithine carbamoyltransferase compare
AO353_02710 -3.0 -14.6 (p)ppGpp synthetase compare
AO353_03360 -3.0 -10.0 glucose-6-phosphate dehydrogenase compare
AO353_10025 -3.0 -16.1 pyruvate carboxylase subunit B compare
AO353_12115 -3.0 -3.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_07215 -2.9 -8.9 anthranilate phosphoribosyltransferase compare
AO353_02330 -2.8 -4.7 allantoicase compare
AO353_16940 -2.8 -6.9 deoxycytidine triphosphate deaminase compare
AO353_22800 -2.8 -4.9 sulfite reductase compare
AO353_10035 -2.8 -9.2 LysR family transcriptional regulator compare
AO353_06495 -2.8 -6.7 gamma-glutamyl phosphate reductase compare
AO353_15925 -2.7 -11.0 2-isopropylmalate synthase compare
AO353_08780 -2.7 -9.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_10030 -2.7 -11.7 pyruvate carboxylase subunit A compare
AO353_24130 -2.6 -4.3 hypothetical protein compare
AO353_13160 -2.5 -3.4 membrane protease HflC compare
AO353_09285 -2.5 -11.6 reactive intermediate/imine deaminase compare
AO353_09240 -2.5 -3.4 acetylglutamate kinase compare
AO353_12365 -2.5 -3.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_13405 -2.4 -4.1 urease accessory protein UreF compare
AO353_07525 -2.3 -13.3 biotin synthase compare
AO353_14595 -2.2 -9.9 carbonate dehydratase compare
AO353_03020 -2.2 -9.0 arginine N-succinyltransferase compare
AO353_14420 -2.2 -5.3 molecular chaperone DnaK compare
AO353_13410 -2.2 -6.4 urease accessory protein UreE conserved
AO353_02335 -2.1 -7.6 ureidoglycolate hydrolase conserved
AO353_13515 -2.1 -4.7 Urease (EC 3.5.1.5) (from data) compare
AO353_13395 -2.0 -3.3 protein hupE compare
AO353_08045 -2.0 -12.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07355 -2.0 -7.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_05105 -2.0 -10.0 histidinol-phosphate aminotransferase compare
AO353_21625 -2.0 -2.5 Fe/S biogenesis protein NfuA compare
AO353_10705 -1.9 -4.5 tryptophan synthase subunit alpha compare
AO353_13400 -1.9 -8.0 urease accessory protein UreG conserved
AO353_07505 -1.9 -7.9 dethiobiotin synthetase compare
AO353_14400 -1.9 -5.4 Fis family transcriptional regulator compare
AO353_13495 -1.9 -9.4 Urease (EC 3.5.1.5) (from data) conserved
AO353_02340 -1.9 -10.3 hypothetical protein conserved
AO353_09275 -1.8 -3.9 DNA-directed RNA polymerase subunit omega compare
AO353_21615 -1.8 -10.9 methionine synthase compare
AO353_06115 -1.8 -7.4 adenosine deaminase conserved
AO353_08165 -1.8 -3.2 pyrroline-5-carboxylate reductase compare
AO353_03615 -1.8 -3.7 cold-shock protein compare
AO353_13520 -1.8 -6.4 urease accessory protein UreD conserved
AO353_27550 -1.7 -3.2 hypothetical protein compare
AO353_05690 -1.7 -4.0 SsrA-binding protein compare
AO353_02250 -1.7 -2.8 chorismate synthase compare
AO353_03415 -1.7 -5.9 glucokinase compare
AO353_07520 -1.7 -9.7 8-amino-7-oxononanoate synthase compare
AO353_03590 -1.6 -3.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_27650 -1.6 -4.8 cell division protein FtsK compare
AO353_07510 -1.6 -8.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_00825 -1.6 -3.6 porin compare
AO353_06050 -1.6 -6.8 exodeoxyribonuclease V subunit gamma compare
AO353_04220 -1.5 -4.8 chemotaxis protein CheY compare
AO353_03420 -1.5 -4.8 phosphogluconate dehydratase compare
AO353_12105 -1.5 -5.3 peptidase S41 compare
AO353_06045 -1.5 -6.7 exodeoxyribonuclease V subunit beta compare
AO353_08265 -1.5 -5.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_10945 -1.4 -3.0 cytochrome C compare
AO353_09720 -1.4 -1.7 hypothetical protein compare
AO353_13140 -1.4 -5.2 tRNA dimethylallyltransferase compare
AO353_00355 -1.4 -2.9 transcriptional regulator compare
AO353_02720 -1.4 -5.6 cysteine synthase compare
AO353_07515 -1.4 -1.6 transporter compare
AO353_14370 -1.4 -5.5 glucose-6-phosphate isomerase compare
AO353_16440 -1.4 -2.6 ArsC family transcriptional regulator compare
AO353_11165 -1.3 -6.6 hypothetical protein compare
AO353_15170 -1.3 -2.2 cytochrome D ubiquinol oxidase subunit III compare
AO353_13225 -1.3 -2.6 50S ribosomal protein L9 compare
AO353_08880 -1.3 -1.9 exopolyphosphatase compare
AO353_11770 -1.3 -1.8 molecular chaperone Hsp33 compare
AO353_25335 -1.3 -1.7 malonate decarboxylase acyl carrier protein compare
AO353_03585 -1.3 -2.7 ATP-dependent DNA helicase RuvA compare
AO353_14795 -1.3 -4.0 molybdopterin-synthase adenylyltransferase compare
AO353_02975 -1.3 -2.9 aspartate kinase compare
AO353_06040 -1.3 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_09050 -1.3 -3.1 recombinase XerC compare
AO353_22945 -1.2 -8.3 glycogen branching protein compare
AO353_10455 -1.2 -1.8 tRNA modification GTPase MnmE compare
AO353_04565 -1.2 -5.0 nucleoid-associated protein compare
AO353_03580 -1.2 -3.3 ATP-dependent DNA helicase RuvB compare
AO353_19000 -1.2 -2.7 ABC transporter compare
AO353_19360 -1.2 -2.4 peroxiredoxin compare
AO353_05520 -1.2 -4.1 nicotinate-nucleotide pyrophosphorylase compare
AO353_02220 -1.1 -1.5 hypothetical protein compare
AO353_20170 -1.1 -4.3 trigger factor compare
AO353_08885 -1.1 -8.7 polyphosphate kinase compare
AO353_00495 -1.1 -1.5 DNA topoisomerase I compare
AO353_09875 -1.1 -2.2 hypothetical protein compare
AO353_02300 -1.1 -2.2 MarR family transcriptional regulator compare
AO353_05055 -1.1 -5.0 peptidylprolyl isomerase compare
AO353_00750 -1.1 -3.8 GntR family transcriptional regulator compare
AO353_06795 -1.1 -2.0 Isochorismatase compare
AO353_07075 -1.1 -3.8 elongation factor Tu compare
AO353_10085 -1.1 -2.9 pyridoxamine kinase compare
AO353_18120 -1.1 -2.0 hypothetical protein compare
AO353_01080 -1.1 -6.3 hypothetical protein compare
AO353_20660 -1.1 -3.6 pseudouridine synthase compare
AO353_08485 -1.0 -7.0 threonine dehydratase compare
AO353_09155 -1.0 -4.9 amino acid dehydrogenase compare
AO353_14150 -1.0 -1.6 peptidylprolyl isomerase compare
AO353_03525 -1.0 -5.6 quinolinate synthase A compare
AO353_14930 -1.0 -2.2 GntR family transcriptional regulator compare
AO353_12080 -1.0 -2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_00810 -1.0 -2.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_01780 -1.0 -6.4 heat-shock protein Hsp90 compare
AO353_07315 -1.0 -2.0 rRNA methyltransferase compare
AO353_16795 -1.0 -3.3 lysozyme compare
AO353_06455 -0.9 -2.1 D-alanyl-D-alanine carboxypeptidase compare
AO353_00730 -0.9 -4.2 FAD-binding molybdopterin dehydrogenase compare
AO353_03595 -0.9 -2.6 hypothetical protein compare
AO353_17650 -0.9 -3.4 response regulator SirA compare
AO353_08115 -0.9 -3.9 energy transducer TonB compare
AO353_10430 -0.9 -2.3 chromosome partitioning protein ParB compare
AO353_11530 -0.9 -5.2 diguanylate cyclase compare
AO353_09040 -0.9 -1.4 diaminopimelate epimerase compare
AO353_00735 -0.9 -7.1 xanthine dehydrogenase compare
AO353_08620 -0.9 -1.8 hypothetical protein compare
AO353_12240 -0.9 -2.7 histidine utilization repressor compare
AO353_08470 -0.9 -2.9 RNA pyrophosphohydrolase compare
AO353_09150 -0.9 -2.2 cytochrome C2 compare
AO353_04365 -0.9 -3.3 recombinase XerD compare
AO353_19565 -0.8 -2.0 vanillate O-demethylase oxidoreductase VanB compare
AO353_16495 -0.8 -3.9 zinc metallopeptidase RseP compare
AO353_02640 -0.8 -1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_18335 -0.8 -2.4 hypothetical protein compare
AO353_13155 -0.8 -2.5 hypothetical protein compare
AO353_17160 -0.8 -2.1 aspartate-semialdehyde dehydrogenase compare
AO353_15725 -0.8 -2.6 hypothetical protein compare
AO353_14775 -0.8 -3.2 hypothetical protein compare
AO353_23945 -0.8 -1.4 hypothetical protein compare
AO353_20630 -0.8 -4.3 SAM-dependent methyltransferase compare
AO353_22415 -0.8 -2.3 alcohol dehydrogenase compare
AO353_11850 -0.8 -2.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_16350 -0.8 -2.4 SAM-dependent methyltransferase compare
AO353_04480 -0.8 -2.4 NGG1p interacting factor NIF3 compare
AO353_04650 -0.8 -2.1 molybdenum cofactor biosynthesis protein MoaE compare
AO353_26050 -0.8 -2.2 hypothetical protein compare
AO353_18540 -0.8 -1.8 pseudouridine synthase compare
AO353_13640 -0.8 -2.2 histidine kinase compare
AO353_01915 -0.8 -1.0 GlcG protein compare
AO353_14935 -0.8 -2.6 aminopeptidase compare
AO353_19145 -0.8 -2.5 protease HtpX compare
AO353_01310 -0.8 -2.8 radical SAM protein compare
AO353_05800 -0.8 -3.1 hypothetical protein compare
AO353_10780 -0.8 -1.3 DNA-binding protein compare
AO353_22930 -0.8 -2.2 hypothetical protein compare
AO353_03245 -0.8 -4.3 permease DsdX compare
AO353_13080 -0.8 -3.7 thiosulfate sulfurtransferase compare
AO353_04175 -0.8 -2.8 glycerol uptake facilitator GlpF compare
AO353_23220 -0.7 -2.0 hypothetical protein compare
AO353_02040 -0.7 -1.6 integration host factor subunit beta compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source Adenine hydrochloride hydrate in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Adenine hydrochloride hydrate across organisms