Experiment set5IT033 for Pseudomonas fluorescens FW300-N1B4

Compare to:

4C survival; 24 hrs

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1565 -1.8 -4.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1403 -1.7 -8.1 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_1335 -1.7 -6.1 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_3779 -1.7 -2.0 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_3168 -1.7 -4.2 AmpG permease compare
Pf1N1B4_3692 -1.6 -3.8 Chaperone protein HtpG compare
Pf1N1B4_2005 -1.6 -2.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_3869 -1.5 -11.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_3751 -1.5 -1.6 FIG00953060: hypothetical protein compare
Pf1N1B4_1008 -1.5 -2.8 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_1307 -1.4 -2.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3870 -1.3 -10.8 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_1472 -1.3 -2.1 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_3871 -1.3 -10.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_769 -1.3 -6.2 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_241 -1.3 -2.4 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_3883 -1.3 -6.3 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf1N1B4_2874 -1.3 -2.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_962 -1.2 -7.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_1569 -1.2 -8.0 Twin-arginine translocation protein TatC compare
Pf1N1B4_1906 -1.2 -4.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3872 -1.2 -7.7 Putative analog of CcoH, COG3198 compare
Pf1N1B4_3884 -1.2 -8.0 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf1N1B4_3722 -1.2 -3.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2493 -1.2 -2.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_960 -1.2 -7.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_3647 -1.2 -7.7 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_1878 -1.1 -7.0 Cytochrome c4 compare
Pf1N1B4_6024 -1.1 -1.8 FIG00953292: hypothetical protein compare
Pf1N1B4_961 -1.1 -8.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_3881 -1.1 -6.4 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf1N1B4_2885 -1.1 -4.9 Paraquat-inducible protein A compare
Pf1N1B4_35 -1.1 -2.9 hypothetical protein compare
Pf1N1B4_2853 -1.0 -2.0 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_1568 -1.0 -2.6 Twin-arginine translocation protein TatB compare
Pf1N1B4_544 -1.0 -1.7 Small-conductance mechanosensitive channel compare
Pf1N1B4_2150 -1.0 -2.5 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_5311 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_2949 -1.0 -2.5 FIG00956396: hypothetical protein compare
Pf1N1B4_875 -1.0 -2.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5420 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_4193 -1.0 -2.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_5575 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_4636 -0.9 -2.5 TPR domain protein in aerotolerance operon compare
Pf1N1B4_608 -0.9 -2.4 Heme oxygenase HemO, associated with heme uptake compare
Pf1N1B4_2856 -0.9 -3.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3499 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4028 -0.9 -2.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_888 -0.9 -3.2 Transglycosylase, Slt family compare
Pf1N1B4_2486 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_3991 -0.9 -2.2 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_5463 -0.9 -2.8 hypothetical protein compare
Pf1N1B4_578 -0.9 -2.5 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2489 -0.9 -2.7 Biotin synthesis protein BioH compare
Pf1N1B4_2713 -0.9 -2.1 FIG00955339: hypothetical protein compare
Pf1N1B4_5542 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_5357 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_4474 -0.9 -2.4 transcription regulator protein compare
Pf1N1B4_4824 -0.8 -2.3 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_16 -0.8 -3.1 Cys regulon transcriptional activator CysB compare
Pf1N1B4_5464 -0.8 -2.5 Cointegrate resolution protein T compare
Pf1N1B4_3802 -0.8 -2.0 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_4857 -0.8 -3.8 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_625 -0.8 -3.2 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_3328 -0.8 -1.8 Rhodanese-like domain protein compare
Pf1N1B4_1317 -0.8 -2.2 Sensor histidine kinase/response regulator compare
Pf1N1B4_5476 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_958 -0.8 -1.8 Stringent starvation protein B compare
Pf1N1B4_1115 -0.8 -5.9 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_756 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_2695 -0.8 -1.9 Rare lipoprotein A precursor compare
Pf1N1B4_2886 -0.8 -5.8 Paraquat-inducible protein B compare
Pf1N1B4_358 -0.8 -4.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_2035 -0.8 -3.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_2265 -0.8 -4.8 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_3222 -0.7 -1.0 Ferredoxin compare
Pf1N1B4_1057 -0.7 -1.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3279 -0.7 -2.3 putative membrane protein compare
Pf1N1B4_5552 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_644 -0.7 -1.6 Cold shock protein CspC compare
Pf1N1B4_3833 -0.7 -4.8 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4087 -0.7 -2.2 MISCELLANEOUS; Unknown compare
Pf1N1B4_3350 -0.7 -1.8 FIG00954807: hypothetical protein compare
Pf1N1B4_2377 -0.7 -3.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_4040 -0.7 -2.1 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_324 -0.7 -2.0 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_4038 -0.7 -1.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1566 -0.7 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5261 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_4422 -0.7 -1.8 ABC transporter amino acid-binding protein compare
Pf1N1B4_2105 -0.7 -1.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_974 -0.7 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1227 -0.7 -2.4 FIG00954870: hypothetical protein compare
Pf1N1B4_1765 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_1540 -0.7 -1.7 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_1608 -0.7 -1.2 FIG00956533: hypothetical protein compare
Pf1N1B4_3874 -0.7 -2.4 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf1N1B4_2085 -0.7 -0.7 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_350 -0.7 -3.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_4029 -0.7 -2.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1116 -0.7 -5.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_1492 -0.7 -1.1 FIG00959437: hypothetical protein compare
Pf1N1B4_867 -0.7 -1.5 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_2912 -0.7 -1.6 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_2488 -0.6 -3.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1266 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_1334 -0.6 -0.9 FIG00955840: hypothetical protein compare
Pf1N1B4_767 -0.6 -2.5 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_1236 -0.6 -3.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3141 -0.6 -1.3 FIG00959768: hypothetical protein compare
Pf1N1B4_1331 -0.6 -2.4 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_5509 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_4659 -0.6 -1.2 Putative outer membrane lipoprotein compare
Pf1N1B4_108 -0.6 -2.0 FIG00954456: hypothetical protein compare
Pf1N1B4_2026 -0.6 -1.9 Transcriptional regulator compare
Pf1N1B4_2284 -0.6 -3.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_4136 -0.6 -2.0 hypothetical protein compare
Pf1N1B4_3938 -0.6 -2.2 Integral membrane protein TerC compare
Pf1N1B4_2171 -0.6 -2.2 Tyrosine recombinase XerC compare
Pf1N1B4_5487 -0.6 -3.0 hypothetical protein compare
Pf1N1B4_3775 -0.6 -1.5 FIG00956876: hypothetical protein compare
Pf1N1B4_3950 -0.6 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4678 -0.6 -2.7 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_2479 -0.6 -1.3 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_4585 -0.6 -2.0 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_339 -0.6 -1.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_364 -0.6 -2.7 Rhodanese domain protein UPF0176 compare
Pf1N1B4_3486 -0.6 -2.6 Transcriptional regulator, AraC family compare
Pf1N1B4_763 -0.6 -2.4 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_224 -0.6 -1.0 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_6042 -0.6 -2.5 Probable transmembrane protein compare
Pf1N1B4_1615 -0.6 -2.1 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_2490 -0.6 -2.9 Biotin synthesis protein BioC compare
Pf1N1B4_4673 -0.6 -2.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf1N1B4_4285 -0.6 -2.1 Inositol transport system sugar-binding protein compare
Pf1N1B4_5282 -0.6 -2.1 Phage protein compare
Pf1N1B4_4035 -0.6 -1.5 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_1114 -0.6 -2.4 ABC transporter, ATP-binding protein compare
Pf1N1B4_5955 -0.6 -2.0 Permease of the major facilitator superfamily compare
Pf1N1B4_2959 -0.6 -3.0 FIG067310: hypothetical protein compare
Pf1N1B4_4723 -0.6 -2.1 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_507 -0.6 -1.2 FIG00956448: hypothetical protein compare
Pf1N1B4_3006 -0.6 -3.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_4198 -0.6 -1.8 4-hydroxybenzoate transporter compare
Pf1N1B4_373 -0.6 -1.8 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_4393 -0.6 -1.3 Ferredoxin reductase compare
Pf1N1B4_2208 -0.6 -2.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_2477 -0.6 -1.9 response regulator compare
Pf1N1B4_2734 -0.6 -0.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_3145 -0.6 -2.1 Decarboxylase family protein compare
Pf1N1B4_535 -0.6 -2.1 FIG00953341: hypothetical protein compare
Pf1N1B4_5659 -0.6 -4.5 NfuA Fe-S protein maturation compare
Pf1N1B4_5864 -0.5 -1.2 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_234 -0.5 -1.5 hypothetical protein compare
Pf1N1B4_1234 -0.5 -2.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2029 -0.5 -1.8 FIG00953722: hypothetical protein compare
Pf1N1B4_3942 -0.5 -2.5 Murein-DD-endopeptidase (EC 3.4.99.-) compare
Pf1N1B4_1 -0.5 -1.4 Colicin V production protein compare
Pf1N1B4_1827 -0.5 -2.6 FIG00953482: hypothetical protein compare
Pf1N1B4_4039 -0.5 -2.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_3468 -0.5 -1.3 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_3868 -0.5 -2.6 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_4569 -0.5 -1.4 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_58 -0.5 -3.2 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4592 -0.5 -1.5 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_2273 -0.5 -2.7 hypothetical protein compare
Pf1N1B4_5446 -0.5 -1.9 hypothetical protein compare
Pf1N1B4_5653 -0.5 -2.2 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_2006 -0.5 -1.5 hypothetical protein compare
Pf1N1B4_4755 -0.5 -1.4 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_4204 -0.5 -1.8 FldA protein compare
Pf1N1B4_3316 -0.5 -1.8 Tricarboxylate transport transcriptional regulator TctD compare
Pf1N1B4_2712 -0.5 -2.1 tRNA-i(6)A37 methylthiotransferase compare
Pf1N1B4_4860 -0.5 -1.8 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_1003 -0.5 -1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2233 -0.5 -3.1 Ferric iron ABC transporter, permease protein compare
Pf1N1B4_3684 -0.5 -2.2 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
Pf1N1B4_5342 -0.5 -1.3 hypothetical protein compare
Pf1N1B4_2884 -0.5 -2.2 Paraquat-inducible protein A compare
Pf1N1B4_2682 -0.5 -1.2 Antiholin-like protein LrgA compare
Pf1N1B4_3873 -0.5 -3.9 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf1N1B4_1408 -0.5 -1.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1330 -0.5 -1.7 hypothetical protein compare
Pf1N1B4_5275 -0.5 -1.2 hypothetical protein compare
Pf1N1B4_5512 -0.5 -1.2 hypothetical protein compare
Pf1N1B4_1835 -0.5 -1.8 hypothetical protein compare
Pf1N1B4_348 -0.5 -2.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2224 -0.5 -1.3 FIG00953390: hypothetical protein compare
Pf1N1B4_1891 -0.5 -1.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_4918 -0.5 -1.1 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_5724 -0.5 -1.3 High-affinity iron permease compare
Pf1N1B4_240 -0.5 -1.2 Transcriptional regulators compare
Pf1N1B4_1256 -0.5 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_3081 -0.5 -4.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_3413 -0.5 -1.2 Transcriptional regulator, LysR family compare
Pf1N1B4_4553 -0.5 -1.5 FIG00959354: hypothetical protein compare
Pf1N1B4_3518 -0.5 -1.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_228 -0.5 -1.7 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_3636 -0.5 -1.5 FIG00953562: hypothetical protein compare
Pf1N1B4_541 -0.5 -1.4 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment