Experiment set5IT033 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07845 -8.8 -2.0 LL-diaminopimelate aminotransferase compare
MMP_RS03450 -8.6 -2.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS01175 -7.7 -3.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05500 -7.4 -7.4 2-isopropylmalate synthase compare
MMP_RS07345 -6.4 -5.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS06625 -6.4 -1.7 DNA primase compare
MMP_RS07630 -6.3 -1.4 ATP-binding cassette domain-containing protein compare
MMP_RS01455 -6.1 -5.7 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03435 -6.1 -1.6 ketol-acid reductoisomerase compare
MMP_RS03600 -6.0 -1.8 triose-phosphate isomerase compare
MMP_RS06270 -5.9 -6.5 TIGR00300 family protein compare
MMP_RS03035 -5.5 -3.7 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04215 -5.4 -8.0 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS07185 -5.4 -11.0 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06355 -5.3 -2.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05550 -5.3 -0.7 cation:proton antiporter compare
MMP_RS06400 -5.3 -1.6 4Fe-4S binding protein compare
MMP_RS04620 -5.2 -11.7 cobalt transporter CbiM compare
MMP_RS09020 -5.2 -1.6 hypothetical protein compare
MMP_RS04605 -5.2 -3.7 cobalt ECF transporter T component CbiQ compare
MMP_RS06895 -5.2 -1.6 selenocysteine-specific translation elongation factor compare
MMP_RS08720 -5.1 -1.3 4Fe-4S binding protein compare
MMP_RS04710 -5.1 -1.6 hypothetical protein compare
MMP_RS08300 -5.1 -1.2 metal-sulfur cluster assembly factor compare
MMP_RS00750 -5.1 -2.4 fumarate hydratase compare
MMP_RS00305 -5.0 -1.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS06730 -5.0 -1.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS01020 -5.0 -0.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03640 -4.9 -4.0 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08435 -4.9 -2.1 Era-like GTP-binding protein compare
MMP_RS04500 -4.9 -20.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06295 -4.8 -8.0 methanogenesis marker 14 protein compare
MMP_RS05060 -4.8 -11.0 AAA family ATPase compare
MMP_RS05085 -4.7 -13.8 AAA family ATPase compare
MMP_RS00300 -4.7 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01385 -4.6 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS02135 -4.6 -4.6 DUF5612 domain-containing protein compare
MMP_RS08635 -4.6 -1.5 UbiA family prenyltransferase compare
MMP_RS05425 -4.6 -5.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01500 -4.6 -2.0 CBS domain-containing protein compare
MMP_RS05095 -4.6 -8.9 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS05080 -4.6 -12.8 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS04615 -4.6 -3.8 PDGLE domain-containing protein compare
MMP_RS05100 -4.5 -19.6 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS03475 -4.5 -0.6 hypothetical protein compare
MMP_RS06120 -4.4 -1.8 UPF0147 family protein compare
MMP_RS06370 -4.4 -5.3 biotin synthase BioB compare
MMP_RS08745 -4.4 -7.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05555 -4.3 -1.4 DUF4040 domain-containing protein compare
MMP_RS05070 -4.3 -9.9 4Fe-4S dicluster domain-containing protein compare
MMP_RS00515 -4.3 -0.8 DUF655 domain-containing protein compare
MMP_RS02900 -4.3 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05090 -4.3 -9.4 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS04780 -4.2 -3.6 ribonuclease P compare
MMP_RS07635 -4.2 -9.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06375 -4.2 -4.6 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS08095 -4.2 -6.2 dethiobiotin synthase compare
MMP_RS07005 -4.2 -0.5 4Fe-4S binding protein compare
MMP_RS03390 -4.2 -7.1 malate dehydrogenase compare
MMP_RS05075 -4.1 -18.5 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS03700 -4.1 -9.3 sodium:proton antiporter compare
MMP_RS03960 -4.1 -0.7 hypothetical protein compare
MMP_RS07645 -4.0 -6.4 aldehyde dehydrogenase family protein compare
MMP_RS01795 -4.0 -1.6 methanogenesis marker 6 protein compare
MMP_RS06315 -4.0 -0.7 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS03015 -4.0 -10.8 GTP 3' 8-cyclase MoaA compare
MMP_RS01830 -4.0 -1.3 tRNA-Val compare
MMP_RS02145 -4.0 -8.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS02240 -4.0 -3.3 methanogenesis marker 7 protein compare
MMP_RS06670 -4.0 -5.1 glucose-6-phosphate isomerase compare
MMP_RS03400 -4.0 -2.9 archease compare
MMP_RS07735 -3.9 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06350 -3.9 -6.0 HesA/MoeB/ThiF family protein compare
MMP_RS03315 -3.9 -1.5 ferrous iron transport protein A compare
MMP_RS01700 -3.8 -0.7 dihydroxy-acid dehydratase compare
MMP_RS01005 -3.8 -1.2 riboflavin synthase compare
MMP_RS07545 -3.8 -1.0 HTH domain-containing protein compare
MMP_RS06925 -3.8 -2.4 ribonuclease VapC4 compare
MMP_RS05055 -3.7 -16.9 DUF166 domain-containing protein compare
MMP_RS05515 -3.7 -5.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01800 -3.6 -4.2 TIGR00303 family protein compare
MMP_RS07380 -3.6 -2.3 transcription elongation factor Spt5 compare
MMP_RS02010 -3.5 -10.8 PHP domain-containing protein compare
MMP_RS06020 -3.5 -4.4 archaeoflavoprotein AfpA compare
MMP_RS02280 -3.5 -0.9 DUF211 domain-containing protein compare
MMP_RS08105 -3.5 -8.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS06340 -3.5 -6.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01610 -3.5 -3.0 hypothetical protein compare
MMP_RS01925 -3.4 -10.6 DUF1616 domain-containing protein compare
MMP_RS08100 -3.4 -7.9 8-amino-7-oxononanoate synthase compare
MMP_RS06885 -3.4 -2.3 50S ribosome-binding GTPase compare
MMP_RS02195 -3.3 -3.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS03145 -3.3 -5.6 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08715 -3.3 -1.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01755 -3.3 -1.2 DUF2097 domain-containing protein compare
MMP_RS06475 -3.3 -3.8 FAD-dependent oxidoreductase compare
MMP_RS07200 -3.3 -6.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07955 -3.2 -6.0 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02345 -3.2 -3.3 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS05930 -3.2 -2.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS06630 -3.2 -0.8 UPF0058 family protein compare
MMP_RS07195 -3.2 -11.3 M20 family metallo-hydrolase compare
MMP_RS04790 -3.2 -12.1 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS04685 -3.1 -2.8 DUF126 domain-containing protein compare
MMP_RS05065 -3.1 -5.2 CooT family nickel-binding protein compare
MMP_RS07075 -3.1 -4.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS01960 -3.1 -0.6 hypothetical protein compare
MMP_RS01225 -3.1 -5.4 DUF5379 domain-containing protein compare
MMP_RS07730 -3.1 -2.0 pyruvate synthase subunit beta compare
MMP_RS01905 -3.1 -13.6 glycosyltransferase compare
MMP_RS05265 -3.1 -2.4 2-isopropylmalate synthase compare
MMP_RS01900 -3.1 -13.4 hypothetical protein compare
MMP_RS01325 -3.0 -1.9 dihydroneopterin aldolase family protein compare
MMP_RS01725 -3.0 -4.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS02875 -3.0 -10.8 chorismate pyruvate-lyase family protein compare
MMP_RS03205 -3.0 -1.1 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS05925 -3.0 -3.5 small nuclear ribonucleoprotein compare
MMP_RS08440 -3.0 -1.5 cell division protein SepF compare
MMP_RS08350 -2.9 -0.9 hypothetical protein compare
MMP_RS08820 -2.9 -4.9 hypothetical protein compare
MMP_RS03025 -2.9 -3.9 molybdenum cofactor guanylyltransferase compare
MMP_RS04775 -2.9 -3.2 adenosylhomocysteinase compare
MMP_RS08330 -2.9 -4.3 NADH-quinone oxidoreductase subunit H compare
MMP_RS04720 -2.9 -3.1 DedA family protein compare
MMP_RS01265 -2.9 -1.7 hypothetical protein compare
MMP_RS07755 -2.9 -1.0 DUF555 domain-containing protein compare
MMP_RS06285 -2.9 -2.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04890 -2.8 -0.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03140 -2.7 -11.5 hypothetical protein compare
MMP_RS08460 -2.7 -2.3 proteasome-activating nucleotidase compare
MMP_RS01910 -2.7 -8.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS08650 -2.7 -2.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS02355 -2.7 -2.7 30S ribosomal protein S27ae compare
MMP_RS06230 -2.7 -1.9 helix-turn-helix domain-containing protein compare
MMP_RS07600 -2.7 -2.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07555 -2.6 -0.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS08370 -2.6 -0.6 cation:proton antiporter subunit C compare
MMP_RS07575 -2.6 -3.9 RNA ligase partner protein compare
MMP_RS08790 -2.6 -1.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS08240 -2.6 -6.2 methanogenesis marker 16 metalloprotein compare
MMP_RS01915 -2.5 -12.4 DUF354 domain-containing protein compare
MMP_RS07710 -2.5 -6.1 cell division protein FtsZ compare
MMP_RS01220 -2.5 -6.6 hypothetical protein compare
MMP_RS08210 -2.5 -2.1 phosphatidylglycerophosphatase A compare
MMP_RS07365 -2.4 -10.5 2-phosphoglycerate kinase compare
MMP_RS07390 -2.4 -2.0 cell division protein FtsZ compare
MMP_RS07615 -2.4 -7.0 energy-coupling factor ABC transporter permease compare
MMP_RS06105 -2.4 -7.2 hydrogenase maturation peptidase HycI compare
MMP_RS00695 -2.4 -0.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS00110 -2.4 -2.0 hypothetical protein compare
MMP_RS07525 -2.3 -7.0 4Fe-4S binding protein compare
MMP_RS05845 -2.3 -1.5 tRNA-intron lyase compare
MMP_RS03445 -2.3 -1.0 methanogenesis marker 17 protein compare
MMP_RS05920 -2.3 -0.7 50S ribosomal protein L37e compare
MMP_RS07435 -2.3 -1.9 GMP synthase subunit A compare
MMP_RS02885 -2.2 -13.1 molybdopterin biosynthesis protein compare
MMP_RS03095 -2.2 -5.9 diphthine synthase compare
MMP_RS05640 -2.2 -6.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08165 -2.1 -2.5 phosphoglycerate dehydrogenase compare
MMP_RS08445 -2.1 -2.7 DUF2099 family protein compare
MMP_RS01970 -2.0 -11.6 TIGR04279 domain-containing protein compare
MMP_RS00895 -2.0 -3.2 hypothetical protein compare
MMP_RS01875 -2.0 -7.1 N-acetyltransferase compare
MMP_RS01895 -2.0 -9.4 flippase compare
MMP_RS06130 -2.0 -2.9 peptidylprolyl isomerase compare
MMP_RS08335 -2.0 -4.7 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS00900 -1.9 -1.6 50S ribosomal protein L39e compare
MMP_RS08320 -1.9 -5.1 molybdopterin molybdotransferase MoeA compare
MMP_RS02800 -1.9 -3.7 nucleotidyltransferase domain-containing protein compare
MMP_RS00810 -1.9 -5.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07445 -1.9 -4.0 helix-turn-helix domain-containing protein compare
MMP_RS05540 -1.9 -2.2 hypothetical protein compare
MMP_RS07625 -1.9 -3.0 cobalt ECF transporter T component CbiQ compare
MMP_RS08785 -1.9 -0.8 RNA-protein complex protein Nop10 compare
MMP_RS01955 -1.9 -1.9 hypothetical protein compare
MMP_RS03155 -1.8 -6.2 precorrin-6A reductase compare
MMP_RS01920 -1.8 -11.6 glycosyltransferase family 2 protein compare
MMP_RS01880 -1.8 -5.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01975 -1.8 -10.0 hypothetical protein compare
MMP_RS01380 -1.8 -2.2 PHP domain-containing protein compare
MMP_RS04055 -1.8 -1.5 hypothetical protein compare
MMP_RS06700 -1.8 -7.5 hypothetical protein compare
MMP_RS04785 -1.8 -8.0 hypothetical protein compare
MMP_RS07750 -1.8 -3.0 DUF357 domain-containing protein compare
MMP_RS07425 -1.8 -4.5 GTP-binding protein compare
MMP_RS00685 -1.8 -2.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00735 -1.7 -2.4 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS00315 -1.7 -5.4 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS08355 -1.7 -5.6 Na(+)/H(+) antiporter subunit B compare
MMP_RS01885 -1.7 -5.5 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS00130 -1.7 -0.8 nickel-responsive transcriptional regulator NikR compare
MMP_RS03250 -1.7 -2.7 MJ1244 family protein compare
MMP_RS07720 -1.7 -10.3 4Fe-4S binding protein compare
MMP_RS05280 -1.7 -7.3 COG1361 S-layer family protein compare
MMP_RS04955 -1.6 -3.8 DNA topoisomerase I compare
MMP_RS02190 -1.6 -2.0 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01540 -1.6 -2.1 DUF504 domain-containing protein compare
MMP_RS06705 -1.6 -5.5 formate/nitrite transporter family protein compare
MMP_RS01240 -1.6 -1.7 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS08340 -1.6 -3.4 4Fe-4S binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Mc_vitamins across organisms