Experiment set5IT033 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -5.3 -3.2 RNA polymerase-binding protein DksA compare
IAI47_09040 -4.6 -2.1 NAD-dependent epimerase compare
IAI47_18530 -4.4 -3.4 thioredoxin TrxA compare
IAI47_06965 -4.3 -1.9 glycosyltransferase family 2 protein compare
IAI47_08705 -4.1 -12.0 carboxy terminal-processing peptidase compare
IAI47_15605 -4.0 -2.1 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_09235 -4.0 -2.0 type I DNA topoisomerase compare
IAI47_09580 -4.0 -2.7 FNR family transcription factor compare
IAI47_13685 -3.7 -2.9 Tol-Pal system protein TolB compare
IAI47_12645 -3.6 -3.5 porin OmpA compare
IAI47_07550 -3.3 -1.2 tRNA-Asn compare
IAI47_17000 -3.3 -14.7 lipoprotein NlpI compare
IAI47_08085 -3.3 -5.8 helix-turn-helix domain-containing protein compare
IAI47_08700 -3.1 -8.3 RNA chaperone ProQ compare
IAI47_10835 -3.1 -1.4 tRNA-Val compare
IAI47_04895 -3.1 -3.6 pyridoxine 5'-phosphate synthase compare
IAI47_18055 -3.0 -5.8 DNA-binding protein HU-alpha compare
IAI47_21450 -3.0 -2.1 general stress protein compare
IAI47_17900 -3.0 -1.8 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_10520 -2.9 -3.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_09055 -2.8 -13.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_16390 -2.8 -1.0 tRNA-Leu compare
IAI47_17215 -2.7 -1.0 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_12275 -2.6 -15.5 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_05070 -2.6 -0.7 outer membrane protein assembly factor BamB compare
IAI47_12280 -2.6 -12.6 glucan biosynthesis protein G compare
IAI47_08440 -2.5 -1.8 crossover junction endodeoxyribonuclease RuvC compare
IAI47_00870 -2.5 -0.9 50S ribosomal protein L31 compare
IAI47_17965 -2.5 -10.6 glucose-6-phosphate isomerase compare
IAI47_13950 -2.5 -1.3 PhoH family protein compare
IAI47_19690 -2.4 -1.2 hypothetical protein compare
IAI47_12885 -2.4 -8.1 pyruvate formate lyase 1-activating protein compare
IAI47_15485 -2.3 -1.0 molecular chaperone Skp compare
IAI47_11830 -2.3 -4.8 muramoyltetrapeptide carboxypeptidase compare
IAI47_06245 -2.3 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_03375 -2.3 -9.0 peptide chain release factor 3 compare
IAI47_02350 -2.3 -1.2 tRNA-Thr compare
IAI47_15110 -2.3 -5.4 chromophore lyase compare
IAI47_12880 -2.3 -14.3 formate C-acetyltransferase compare
IAI47_04865 -2.3 -2.1 SoxR-reducing system protein RseC compare
IAI47_11310 -2.2 -3.3 redox-regulated ATPase YchF compare
IAI47_13690 -2.2 -0.6 cell envelope integrity protein TolA compare
IAI47_13700 -2.2 -2.6 Tol-Pal system protein TolQ compare
IAI47_18410 -2.2 -4.6 diaminopimelate epimerase compare
IAI47_10845 -2.2 -3.1 major outer membrane lipoprotein compare
IAI47_10840 -2.2 -4.3 pyruvate kinase PykF compare
IAI47_00780 -2.1 -3.5 6-phosphofructokinase compare
IAI47_06235 -2.1 -6.0 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16080 -2.1 -7.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_04300 -2.1 -7.2 recombinase RecA compare
IAI47_05520 -2.1 -1.1 tRNA-Ala compare
IAI47_04120 -2.0 -12.1 GTP diphosphokinase compare
IAI47_15005 -2.0 -1.8 hypothetical protein compare
IAI47_07905 -2.0 -0.7 Arc family DNA-binding protein compare
IAI47_07165 -2.0 -2.3 exodeoxyribonuclease I compare
IAI47_16350 -1.9 -6.1 phosphoserine phosphatase compare
IAI47_05050 -1.8 -4.5 cytoskeleton protein RodZ compare
IAI47_06450 -1.8 -4.0 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_12920 -1.8 -3.7 thioredoxin-disulfide reductase compare
IAI47_15595 -1.8 -1.4 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_07030 -1.7 -5.4 HAD family hydrolase compare
IAI47_18480 -1.7 -6.4 lipid III flippase WzxE compare
IAI47_15305 -1.7 -3.0 allantoin racemase compare
IAI47_18470 -1.7 -7.9 ECA oligosaccharide polymerase compare
IAI47_03820 -1.7 -3.8 site-specific tyrosine recombinase XerD compare
IAI47_18520 -1.7 -9.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_15115 -1.6 -6.7 glutamate-5-semialdehyde dehydrogenase compare
IAI47_04870 -1.6 -5.5 elongation factor 4 compare
IAI47_15120 -1.6 -5.1 glutamate 5-kinase compare
IAI47_17020 -1.6 -2.7 30S ribosome-binding factor RbfA compare
IAI47_06455 -1.6 -5.1 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_12865 -1.6 -8.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_15995 -1.6 -1.6 leu operon leader peptide compare
IAI47_17005 -1.6 -4.4 polyribonucleotide nucleotidyltransferase compare
IAI47_05155 -1.6 -10.0 polyphosphate kinase 1 compare
IAI47_16930 -1.6 -3.8 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_13155 -1.6 -1.8 H-NS histone family protein compare
IAI47_18830 -1.6 -0.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_00110 -1.6 -5.9 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_04805 -1.6 -4.3 outer membrane protein assembly factor BamE compare
IAI47_01005 -1.6 -7.8 DUF413 domain-containing protein compare
IAI47_18715 -1.5 -1.4 YibL family ribosome-associated protein compare
IAI47_07490 -1.5 -2.1 DNA-binding protein compare
IAI47_13695 -1.5 -0.4 colicin uptake protein TolR compare
IAI47_03195 -1.5 -2.6 cell division protein FtsP compare
IAI47_04425 -1.5 -6.6 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_04835 -1.5 -6.4 ATP-dependent RNA helicase SrmB compare
IAI47_08850 -1.5 -4.0 septum site-determining protein MinD compare
IAI47_13885 -1.5 -1.6 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_10825 -1.5 -1.2 tRNA-Val compare
IAI47_00330 -1.5 -8.4 low affinity potassium transporter Kup compare
IAI47_03725 -1.5 -3.9 phosphoglycerate dehydrogenase compare
IAI47_17645 -1.5 -3.1 hypothetical protein compare
IAI47_06325 -1.5 -4.9 acetate kinase compare
IAI47_15895 -1.5 -2.3 secA regulator SecM compare
IAI47_07015 -1.5 -3.6 ABC transporter ATP-binding protein compare
IAI47_18400 -1.5 -2.1 tyrosine recombinase XerC compare
IAI47_12790 -1.5 -0.6 chromosome partition protein MukE compare
IAI47_16520 -1.5 -4.1 hypothetical protein compare
IAI47_03550 -1.5 -6.7 membrane-bound lytic murein transglycosylase MltC compare
IAI47_17155 -1.5 -7.4 calcium/sodium antiporter compare
IAI47_16990 -1.5 -2.8 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_00940 -1.4 -4.8 HTH-type transcriptional repressor FabR compare
IAI47_01475 -1.4 -6.4 MurR/RpiR family transcriptional regulator compare
IAI47_06320 -1.4 -4.8 phosphate acetyltransferase compare
IAI47_10775 -1.4 -3.9 ribonuclease T compare
IAI47_14955 -1.4 -1.4 phosphate starvation-inducible protein compare
IAI47_07060 -1.4 -6.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_10745 -1.4 -3.4 superoxide dismutase family protein compare
IAI47_03680 -1.4 -7.2 transketolase compare
IAI47_16925 -1.4 -8.4 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_07065 -1.4 -6.4 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_09165 -1.4 -5.0 tryptophan synthase subunit alpha compare
IAI47_04950 -1.4 -5.9 nitrogen regulatory protein P-II compare
IAI47_03685 -1.4 -5.8 erythrose-4-phosphate dehydrogenase compare
IAI47_09855 -1.4 -2.9 DUF2384 domain-containing protein compare
IAI47_01135 -1.3 -0.6 hypothetical protein compare
IAI47_01180 -1.3 -1.4 prolyl oligopeptidase family serine peptidase compare
IAI47_06240 -1.3 -5.0 aspartate-semialdehyde dehydrogenase compare
IAI47_07025 -1.3 -3.3 glycosyltransferase family 4 protein compare
IAI47_19945 -1.3 -0.6 hypothetical protein compare
IAI47_03860 -1.3 -6.0 diaminopimelate decarboxylase compare
IAI47_09360 -1.3 -0.8 peptide ABC transporter ATP-binding protein SapF compare
IAI47_07080 -1.3 -4.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_11880 -1.2 -1.5 hypothetical protein compare
IAI47_01000 -1.2 -8.2 HTH-type transcriptional regulator HdfR compare
IAI47_05295 -1.2 -2.8 YpfN family protein compare
IAI47_10320 -1.2 -0.8 Rrf2 family transcriptional regulator compare
IAI47_00875 -1.2 -1.5 met regulon transcriptional regulator MetJ compare
IAI47_00500 -1.2 -6.4 ATP-dependent DNA helicase RecG compare
IAI47_01525 -1.2 -3.5 DUF2500 domain-containing protein compare
IAI47_15155 -1.2 -2.3 DUF943 family protein compare
IAI47_07090 -1.2 -5.3 histidinol dehydrogenase compare
IAI47_17225 -1.2 -7.5 sulfite reductase subunit alpha compare
IAI47_15540 -1.2 -5.7 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_15655 -1.2 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
IAI47_05195 -1.2 -1.4 DnaA inactivator Hda compare
IAI47_21765 -1.2 -1.3 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_21035 -1.2 -2.3 TetR/AcrR family transcriptional regulator compare
IAI47_20995 -1.2 -1.7 hypothetical protein compare
IAI47_05425 -1.2 -3.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_17120 -1.2 -1.6 BolA family iron metabolism protein IbaG compare
IAI47_13840 -1.1 -2.4 replication initiation negative regulator SeqA compare
IAI47_09170 -1.1 -6.3 tryptophan synthase subunit beta compare
IAI47_00890 -1.1 -4.7 methylenetetrahydrofolate reductase compare
IAI47_00655 -1.1 -1.6 glycosyltransferase family 4 protein compare
IAI47_05745 -1.1 -1.2 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_10545 -1.1 -2.2 hypothetical protein compare
IAI47_11450 -1.1 -2.5 ankyrin repeat domain-containing protein compare
IAI47_17235 -1.1 -4.6 stringent starvation protein A compare
IAI47_09720 -1.1 -5.7 TetR/AcrR family transcriptional regulator compare
IAI47_18310 -1.1 -6.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
IAI47_06900 -1.1 -2.2 phosphatase PAP2 family protein compare
IAI47_05090 -1.1 -2.0 hypothetical protein compare
IAI47_09010 -1.1 -3.9 formyltetrahydrofolate deformylase compare
IAI47_07470 -1.1 -1.6 AlpA family transcriptional regulator compare
IAI47_12470 -1.1 -6.8 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_07075 -1.1 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_12565 -1.1 -6.1 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_00915 -1.1 -5.9 argininosuccinate synthase compare
IAI47_13415 -1.1 -5.2 L,D-transpeptidase family protein compare
IAI47_14470 -1.1 -1.3 YbaB/EbfC family nucleoid-associated protein compare
IAI47_13890 -1.1 -3.7 ROK family transcriptional regulator compare
IAI47_16195 -1.1 -4.3 transaldolase compare
IAI47_17220 -1.1 -7.8 glutamate synthase large subunit compare
IAI47_00455 -1.1 -4.9 nitrogen regulation protein NR(II) compare
IAI47_04750 -1.1 -1.2 hypothetical protein compare
IAI47_14495 -1.0 -2.8 hypothetical protein compare
IAI47_01030 -1.0 -5.2 branched-chain amino acid transaminase compare
IAI47_14930 -1.0 -1.9 shikimate kinase AroL compare
IAI47_14850 -1.0 -5.3 phosphate regulon sensor histidine kinase PhoR compare
IAI47_15920 -1.0 -3.0 D-alanine--D-alanine ligase compare
IAI47_13770 -1.0 -4.9 citrate synthase compare
IAI47_03975 -1.0 -5.1 amino-acid N-acetyltransferase compare
IAI47_01035 -1.0 -7.0 dihydroxy-acid dehydratase compare
IAI47_18490 -1.0 -2.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_13625 -1.0 -4.5 CDF family zinc transporter ZitB compare
IAI47_12915 -1.0 -4.5 leucine-responsive transcriptional regulator Lrp compare
IAI47_09190 -1.0 -4.8 anthranilate synthase component 1 compare
IAI47_13545 -1.0 -4.8 6-phosphogluconolactonase compare
IAI47_16210 -1.0 -4.6 homoserine kinase compare
IAI47_00505 -1.0 -2.7 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_07085 -1.0 -5.4 histidinol-phosphate transaminase compare
IAI47_12760 -1.0 -5.3 porin OmpF compare
IAI47_08910 -1.0 -2.8 DUF1480 family protein compare
IAI47_13900 -1.0 -5.8 asparagine synthase B compare
IAI47_19035 -1.0 -1.6 transcriptional regulator compare
IAI47_16120 -1.0 -3.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_08615 -1.0 -2.4 phage baseplate assembly protein V compare
IAI47_08445 -1.0 -0.8 Holliday junction branch migration protein RuvA compare
IAI47_09180 -1.0 -4.6 anthranilate phosphoribosyltransferase compare
IAI47_10470 -1.0 -1.4 electron transport complex subunit E compare
IAI47_15645 -1.0 -4.3 polynucleotide adenylyltransferase PcnB compare
IAI47_18705 -1.0 -4.6 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_17165 -1.0 -4.7 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_00895 -1.0 -6.0 phosphoenolpyruvate carboxylase compare
IAI47_00770 -1.0 -0.4 general stress protein compare
IAI47_20245 -1.0 -3.8 DUF1109 domain-containing protein compare
IAI47_05580 -1.0 -0.8 membrane protein YpdK compare
IAI47_10600 -0.9 -2.0 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For survival Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms