Experiment set5IT031 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Parabanic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_12365 -4.5 -3.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_12690 -4.2 -1.4 acyl carrier protein compare
AO353_13530 -4.1 -4.9 ABC transporter ATP-binding protein compare
AO353_17205 -3.9 -2.8 beta-ketoadipyl CoA thiolase compare
AO353_12150 -3.9 -6.5 histidine kinase compare
AO353_13405 -3.7 -4.2 urease accessory protein UreF compare
AO353_13070 -3.6 -9.9 phosphoserine phosphatase compare
AO353_12090 -3.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12115 -3.4 -2.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13410 -3.3 -7.8 urease accessory protein UreE conserved
AO353_12500 -3.3 -2.3 shikimate kinase compare
AO353_06495 -3.2 -6.2 gamma-glutamyl phosphate reductase compare
AO353_13925 -3.2 -3.1 XRE family transcriptional regulator compare
AO353_05115 -3.1 -12.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_10510 -3.1 -2.1 benzoate transporter compare
AO353_12085 -3.1 -9.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_22945 -3.1 -13.3 glycogen branching protein compare
AO353_07220 -3.1 -8.5 anthranilate synthase compare
AO353_18960 -3.0 -2.9 terminase compare
AO353_10445 -3.0 -2.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_16530 -3.0 -2.1 ribonuclease HII compare
AO353_20635 -3.0 -11.3 3-isopropylmalate dehydrogenase compare
AO353_07230 -2.9 -16.0 anthranilate synthase compare
AO353_20665 -2.9 -9.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_00495 -2.9 -2.7 DNA topoisomerase I compare
AO353_03360 -2.9 -9.7 glucose-6-phosphate dehydrogenase compare
AO353_04155 -2.8 -12.9 ornithine carbamoyltransferase compare
AO353_14150 -2.8 -1.9 peptidylprolyl isomerase compare
AO353_20625 -2.8 -5.8 3-isopropylmalate dehydratase compare
AO353_02710 -2.8 -13.1 (p)ppGpp synthetase compare
AO353_10780 -2.8 -2.2 DNA-binding protein compare
AO353_08165 -2.8 -3.3 pyrroline-5-carboxylate reductase compare
AO353_03590 -2.7 -4.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_12145 -2.7 -5.5 nitrogen regulation protein NR(I) compare
AO353_05690 -2.7 -3.7 SsrA-binding protein compare
AO353_20620 -2.7 -5.0 isopropylmalate isomerase compare
AO353_04325 -2.7 -3.2 hypothetical protein compare
AO353_00825 -2.7 -4.0 porin compare
AO353_09155 -2.6 -8.1 amino acid dehydrogenase compare
AO353_14115 -2.6 -8.1 gamma-glutamyl kinase compare
AO353_09265 -2.6 -2.8 hypothetical protein compare
AO353_00310 -2.6 -9.0 transaldolase compare
AO353_05110 -2.6 -8.9 histidinol dehydrogenase compare
AO353_14420 -2.6 -4.9 molecular chaperone DnaK compare
AO353_06040 -2.6 -4.3 exodeoxyribonuclease V subunit alpha compare
AO353_08185 -2.6 -9.6 methionine biosynthesis protein MetW compare
AO353_08345 -2.5 -8.5 dihydroxy-acid dehydratase compare
AO353_14495 -2.5 -11.6 acetolactate synthase 3 catalytic subunit compare
AO353_12105 -2.5 -7.1 peptidase S41 compare
AO353_14220 -2.5 -2.1 ribosomal large subunit pseudouridine synthase D compare
AO353_04105 -2.5 -9.6 argininosuccinate synthase compare
AO353_18135 -2.5 -1.9 hypothetical protein compare
AO353_14505 -2.5 -11.4 ketol-acid reductoisomerase compare
AO353_12520 -2.5 -9.4 glutamate synthase compare
AO353_08510 -2.5 -6.4 3-phosphoglycerate dehydrogenase compare
AO353_27350 -2.5 -3.1 hypothetical protein compare
AO353_10705 -2.4 -4.6 tryptophan synthase subunit alpha compare
AO353_13515 -2.4 -3.5 Urease (EC 3.5.1.5) (from data) compare
AO353_12515 -2.4 -14.6 glutamate synthase compare
AO353_12015 -2.4 -2.3 antitoxin compare
AO353_18130 -2.4 -2.2 hypothetical protein compare
AO353_05055 -2.3 -4.4 peptidylprolyl isomerase compare
AO353_02685 -2.3 -4.3 phosphoribosylglycinamide formyltransferase compare
AO353_14775 -2.3 -6.4 hypothetical protein compare
AO353_26055 -2.3 -2.1 hypothetical protein compare
AO353_01915 -2.3 -1.9 GlcG protein compare
AO353_13525 -2.3 -6.5 ABC transporter ATP-binding protein conserved
AO353_08885 -2.3 -11.8 polyphosphate kinase compare
AO353_08465 -2.3 -11.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_24255 -2.3 -4.0 hypothetical protein compare
AO353_27650 -2.3 -4.3 cell division protein FtsK compare
AO353_21640 -2.3 -1.6 cobalt transporter compare
AO353_07155 -2.3 -6.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07210 -2.2 -3.9 indole-3-glycerol-phosphate synthase compare
AO353_03580 -2.2 -4.3 ATP-dependent DNA helicase RuvB compare
AO353_02320 -2.2 -7.4 allantoinase compare
AO353_16450 -2.2 -9.8 protein-PII uridylyltransferase compare
AO353_13400 -2.2 -6.6 urease accessory protein UreG conserved
AO353_02070 -2.2 -7.7 prephenate dehydratase compare
AO353_18120 -2.2 -3.0 hypothetical protein compare
AO353_24440 -2.2 -1.9 reactive intermediate/imine deaminase compare
AO353_12360 -2.2 -8.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_10710 -2.2 -5.7 tryptophan synthase subunit beta compare
AO353_13155 -2.1 -4.5 hypothetical protein compare
AO353_16040 -2.1 -2.0 hypothetical protein compare
AO353_00360 -2.1 -4.5 ATPase compare
AO353_03615 -2.1 -3.7 cold-shock protein compare
AO353_16380 -2.1 -3.8 hypothetical protein compare
AO353_08015 -2.1 -7.1 5,10-methylenetetrahydrofolate reductase compare
AO353_28425 -2.1 -3.5 TetR family transcriptional regulator compare
AO353_10670 -2.1 -5.5 shikimate dehydrogenase compare
AO353_12075 -2.0 -6.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08685 -2.0 -7.8 N-acetylglutamate synthase compare
AO353_23495 -2.0 -2.6 SAM-dependent methyltransferase compare
AO353_02640 -2.0 -1.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_13520 -2.0 -5.2 urease accessory protein UreD conserved
AO353_04220 -2.0 -5.4 chemotaxis protein CheY compare
AO353_14500 -2.0 -6.7 acetolactate synthase 3 regulatory subunit compare
AO353_03605 -2.0 -1.3 FmdB family transcriptional regulator compare
AO353_20695 -2.0 -4.7 O-succinylhomoserine sulfhydrylase compare
AO353_02975 -2.0 -2.6 aspartate kinase compare
AO353_08180 -2.0 -8.9 homoserine O-acetyltransferase compare
AO353_08475 -1.9 -5.5 phosphoserine phosphatase compare
AO353_12070 -1.9 -5.6 imidazoleglycerol-phosphate dehydratase compare
AO353_13495 -1.9 -6.9 Urease (EC 3.5.1.5) (from data) conserved
AO353_13225 -1.9 -3.1 50S ribosomal protein L9 compare
AO353_07215 -1.9 -5.6 anthranilate phosphoribosyltransferase compare
AO353_05420 -1.9 -2.1 peptide chain release factor 3 compare
AO353_01375 -1.9 -4.1 phosphate acyltransferase compare
AO353_12225 -1.9 -2.8 hypothetical protein compare
AO353_00610 -1.9 -2.1 cytochrome C oxidase Cbb3 compare
AO353_09275 -1.9 -2.6 DNA-directed RNA polymerase subunit omega compare
AO353_13540 -1.9 -7.1 urea ABC transporter permease conserved
AO353_27000 -1.8 -1.8 hypothetical protein compare
AO353_07515 -1.8 -1.9 transporter compare
AO353_06355 -1.8 -2.8 thiamine-phosphate pyrophosphorylase compare
AO353_21440 -1.8 -2.7 hypothetical protein compare
AO353_10085 -1.8 -3.4 pyridoxamine kinase compare
AO353_19770 -1.7 -2.0 peptidase compare
AO353_03710 -1.7 -3.4 formyltetrahydrofolate deformylase compare
AO353_25450 -1.7 -2.2 cyanate hydratase compare
AO353_04520 -1.7 -5.1 elongation factor 4 compare
AO353_04500 -1.7 -2.3 DNA repair protein RecO compare
AO353_13545 -1.7 -6.7 branched-chain amino acid ABC transporter substrate-binding protein conserved
AO353_20265 -1.7 -2.2 spore coat protein compare
AO353_11850 -1.7 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14595 -1.7 -6.1 carbonate dehydratase compare
AO353_23905 -1.7 -3.0 GntR family transcriptional regulator compare
AO353_03820 -1.7 -2.6 Asp/Glu/hydantoin racemase compare
AO353_20170 -1.7 -4.5 trigger factor compare
AO353_09670 -1.6 -4.4 hypothetical protein compare
AO353_19000 -1.6 -2.2 ABC transporter compare
AO353_00860 -1.6 -3.7 EstX protein compare
AO353_13095 -1.6 -3.2 flagellar motor protein MotB compare
AO353_15925 -1.6 -7.0 2-isopropylmalate synthase compare
AO353_14370 -1.6 -5.0 glucose-6-phosphate isomerase compare
AO353_09240 -1.6 -3.0 acetylglutamate kinase compare
AO353_21355 -1.6 -1.6 xylose isomerase compare
AO353_15410 -1.6 -1.7 hypothetical protein compare
AO353_13165 -1.6 -2.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12080 -1.5 -3.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_13300 -1.5 -1.7 LOG family protein compare
AO353_14585 -1.5 -4.3 ribosomal-protein-alanine acetyltransferase compare
AO353_09000 -1.5 -4.1 argininosuccinate lyase compare
AO353_03415 -1.5 -3.3 glucokinase compare
AO353_02075 -1.5 -6.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_01780 -1.5 -7.2 heat-shock protein Hsp90 compare
AO353_13160 -1.5 -1.9 membrane protease HflC compare
AO353_26180 -1.5 -2.2 phage tail protein compare
AO353_09235 -1.5 -5.3 phosphoglucomutase compare
AO353_12790 -1.5 -1.3 hypothetical protein compare
AO353_10430 -1.5 -2.2 chromosome partitioning protein ParB compare
AO353_10435 -1.5 -6.3 chromosome partitioning protein compare
AO353_07850 -1.5 -3.0 ATP-dependent RNA helicase compare
AO353_15485 -1.5 -4.8 phosphate-starvation-inducible protein PsiE compare
AO353_06050 -1.5 -5.7 exodeoxyribonuclease V subunit gamma compare
AO353_28555 -1.5 -1.5 LysR family transcriptional regulator compare
AO353_15645 -1.5 -2.1 hypothetical protein compare
AO353_21830 -1.5 -7.5 chemotaxis protein CheY compare
AO353_02940 -1.5 -2.3 DNA-binding protein compare
AO353_06455 -1.4 -1.9 D-alanyl-D-alanine carboxypeptidase compare
AO353_18335 -1.4 -1.8 hypothetical protein compare
AO353_20175 -1.4 -3.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_15260 -1.4 -3.9 stringent starvation protein A compare
AO353_27725 -1.4 -1.9 GNAT family acetyltransferase compare
AO353_23950 -1.4 -1.4 hypothetical protein compare
AO353_25845 -1.4 -2.2 GNAT family acetyltransferase compare
AO353_15250 -1.4 -2.7 cytochrome B compare
AO353_02040 -1.4 -1.4 integration host factor subunit beta compare
AO353_18655 -1.4 -2.3 flagellar assembly protein FliT compare
AO353_26525 -1.4 -1.2 hypothetical protein compare
AO353_22800 -1.4 -1.8 sulfite reductase compare
AO353_09050 -1.4 -2.7 recombinase XerC compare
AO353_08780 -1.4 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
AO353_19280 -1.4 -1.3 hypothetical protein compare
AO353_22580 -1.4 -1.9 3-demethylubiquinone-9 3-methyltransferase compare
AO353_15725 -1.4 -2.8 hypothetical protein compare
AO353_06045 -1.4 -4.8 exodeoxyribonuclease V subunit beta compare
AO353_02715 -1.4 -2.8 23S rRNA methyltransferase compare
AO353_08470 -1.3 -3.5 RNA pyrophosphohydrolase compare
AO353_16745 -1.3 -1.6 ArsR family transcriptional regulator compare
AO353_03830 -1.3 -0.8 antibiotic biosynthesis monooxygenase compare
AO353_23785 -1.3 -1.0 hypothetical protein compare
AO353_02250 -1.3 -2.5 chorismate synthase compare
AO353_00255 -1.3 -2.4 hypothetical protein compare
AO353_19720 -1.3 -2.8 hemolysin D compare
AO353_11050 -1.3 -2.9 hypothetical protein compare
AO353_14945 -1.3 -1.6 hypothetical protein compare
AO353_11530 -1.3 -4.9 diguanylate cyclase compare
AO353_09765 -1.3 -2.6 hypothetical protein compare
AO353_19205 -1.3 -2.2 hypothetical protein compare
AO353_24335 -1.3 -2.6 L-asparagine permease compare
AO353_12625 -1.3 -3.1 hypothetical protein compare
AO353_04175 -1.3 -3.2 glycerol uptake facilitator GlpF compare
AO353_06540 -1.3 -0.9 hypothetical protein compare
AO353_08215 -1.3 -2.8 thiazole synthase compare
AO353_14340 -1.3 -1.7 phospholipid-binding protein compare
AO353_01020 -1.3 -3.0 hypothetical protein compare
AO353_10035 -1.3 -3.9 LysR family transcriptional regulator compare
AO353_26680 -1.3 -2.3 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source Parabanic Acid in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Parabanic Acid across organisms