Experiment set5IT030 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Aluminum chloride hydrate 0.00005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3658 -3.7 -6.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3663 -3.0 -8.6 Glycosyl transferase compare
Pf6N2E2_3661 -2.9 -4.8 hypothetical protein compare
Pf6N2E2_4611 -2.8 -3.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2825 -2.8 -4.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2507 -2.7 -6.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3282 -2.7 -3.2 FIG005080: Possible exported protein compare
Pf6N2E2_3659 -2.6 -5.9 Protein fixF compare
Pf6N2E2_3461 -2.6 -3.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5069 -2.5 -6.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2313 -2.4 -4.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5068 -2.3 -11.1 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3655 -2.3 -11.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4204 -2.2 -2.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3656 -2.1 -6.2 Probable transcription regulator Mig-14 compare
Pf6N2E2_2509 -2.1 -2.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_434 -2.1 -2.5 hypothetical protein compare
Pf6N2E2_178 -2.1 -1.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2753 -2.0 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_5316 -2.0 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3303 -2.0 -4.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3829 -2.0 -5.1 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3261 -1.9 -4.2 hypothetical protein compare
Pf6N2E2_2218 -1.9 -4.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2274 -1.9 -5.6 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2527 -1.9 -4.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_156 -1.8 -1.2 Carbon storage regulator compare
Pf6N2E2_1056 -1.8 -1.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3664 -1.8 -5.9 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_1626 -1.8 -6.6 Putative ATP-binding component of a transport system compare
Pf6N2E2_2506 -1.8 -10.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5527 -1.8 -2.6 Cold shock protein CspC compare
Pf6N2E2_2320 -1.8 -2.8 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2508 -1.7 -3.7 hypothetical protein compare
Pf6N2E2_3782 -1.7 -3.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2217 -1.7 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3941 -1.6 -3.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_122 -1.6 -3.0 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_4987 -1.5 -1.3 MaoC-like domain protein compare
Pf6N2E2_4773 -1.5 -1.3 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_4369 -1.5 -2.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4454 -1.5 -4.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5567 -1.4 -2.2 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_3839 -1.4 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3830 -1.4 -3.1 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_3612 -1.4 -1.8 HflK protein compare
Pf6N2E2_2010 -1.4 -1.4 hypothetical protein compare
Pf6N2E2_48 -1.4 -3.1 FIG00955661: hypothetical protein compare
Pf6N2E2_3373 -1.4 -2.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3842 -1.4 -3.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2513 -1.4 -2.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2510 -1.4 -3.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_70 -1.4 -3.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5609 -1.3 -4.4 DNA-binding response regulator ColR compare
Pf6N2E2_2514 -1.3 -4.0 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3251 -1.3 -5.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1636 -1.3 -6.6 Ferrichrome-iron receptor compare
Pf6N2E2_3252 -1.3 -5.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5337 -1.3 -3.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5339 -1.3 -4.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2310 -1.3 -6.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3480 -1.3 -1.8 Transcriptional regulator, ArsR family compare
Pf6N2E2_2473 -1.3 -1.5 Major outer membrane lipoprotein I compare
Pf6N2E2_4499 -1.2 -2.3 protein of unknown function DUF86 compare
Pf6N2E2_5705 -1.2 -1.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_600 -1.2 -2.9 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3568 -1.2 -2.6 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_5261 -1.2 -1.3 FIG00956983: hypothetical protein compare
Pf6N2E2_2823 -1.2 -3.3 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3351 -1.2 -3.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3004 -1.2 -2.8 Prophage baseplate assembly protein V compare
Pf6N2E2_1935 -1.2 -2.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5727 -1.2 -4.2 FIG00955360: hypothetical protein compare
Pf6N2E2_350 -1.2 -2.1 Gfa-like protein compare
Pf6N2E2_3253 -1.1 -4.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5156 -1.1 -1.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5816 -1.1 -1.5 Smr domain protein compare
Pf6N2E2_2999 -1.1 -2.5 probable tail fiber assembly protein compare
Pf6N2E2_1087 -1.1 -5.8 Iron siderophore sensor protein compare
Pf6N2E2_3841 -1.1 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5523 -1.1 -2.4 Small-conductance mechanosensitive channel compare
Pf6N2E2_3096 -1.1 -1.4 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_339 -1.1 -2.0 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_155 -1.1 -2.7 Probable transmembrane protein compare
Pf6N2E2_3786 -1.1 -2.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_3534 -1.1 -2.4 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3521 -1.0 -4.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_3610 -1.0 -3.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2824 -1.0 -5.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2561 -1.0 -2.3 FIG00955434: hypothetical protein compare
Pf6N2E2_6140 -1.0 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5646 -1.0 -1.4 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5944 -1.0 -3.7 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_3192 -1.0 -2.6 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_3847 -1.0 -2.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2127 -1.0 -3.0 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2311 -1.0 -4.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4908 -1.0 -4.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4276 -1.0 -3.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2219 -1.0 -1.5 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3607 -1.0 -5.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4187 -1.0 -2.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3783 -1.0 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4993 -1.0 -2.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_170 -1.0 -1.7 lipoprotein, putative compare
Pf6N2E2_4153 -1.0 -1.1 Sensory box histidine kinase compare
Pf6N2E2_6058 -0.9 -3.0 FIG139976: hypothetical protein compare
Pf6N2E2_2853 -0.9 -5.9 Iron-regulated protein A precursor compare
Pf6N2E2_4372 -0.9 -3.3 FIG00460773: hypothetical protein compare
Pf6N2E2_4889 -0.9 -3.3 Putative transport protein compare
Pf6N2E2_4025 -0.9 -0.7 hypothetical protein compare
Pf6N2E2_5508 -0.9 -1.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3665 -0.9 -0.8 serine/threonine protein kinase compare
Pf6N2E2_6093 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_5505 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_5252 -0.9 -1.3 FIG00956396: hypothetical protein compare
Pf6N2E2_5320 -0.9 -4.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_799 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_3179 -0.9 -1.4 FIG021952: putative membrane protein compare
Pf6N2E2_1584 -0.9 -1.9 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_5338 -0.9 -4.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2318 -0.9 -3.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5052 -0.9 -1.8 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_2552 -0.9 -2.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2340 -0.9 -2.5 Transcriptional regulator, GntR family compare
Pf6N2E2_6065 -0.9 -1.5 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2447 -0.9 -4.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3770 -0.9 -1.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_2871 -0.9 -1.8 FIG00954271: hypothetical protein compare
Pf6N2E2_28 -0.9 -1.7 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2111 -0.8 -2.1 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_5739 -0.8 -0.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3940 -0.8 -4.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5321 -0.8 -4.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_40 -0.8 -3.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2312 -0.8 -1.3 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5842 -0.8 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_1972 -0.8 -1.6 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_1563 -0.8 -2.9 Transcriptional regulator, AraC family compare
Pf6N2E2_623 -0.8 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_4362 -0.8 -2.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5318 -0.8 -6.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_5223 -0.8 -2.2 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_2114 -0.8 -2.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1635 -0.8 -1.8 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_1273 -0.8 -2.3 Probable RND efflux membrane fusion protein compare
Pf6N2E2_5319 -0.8 -4.2 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_5745 -0.8 -3.4 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_5155 -0.8 -1.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2193 -0.8 -2.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_5671 -0.8 -2.0 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_680 -0.8 -3.7 D-amino-acid oxidase (EC 1.4.3.3) compare
Pf6N2E2_1179 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_4607 -0.8 -2.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_6057 -0.8 -1.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_1834 -0.8 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5571 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_4352 -0.8 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_571 -0.8 -2.9 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_833 -0.8 -2.5 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_5840 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_2373 -0.8 -1.8 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_2201 -0.8 -2.3 Transmembrane regulator protein PrtR compare
Pf6N2E2_1404 -0.8 -1.9 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_4278 -0.8 -4.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_1499 -0.7 -2.1 ABC transporter amino acid-binding protein compare
Pf6N2E2_3849 -0.7 -1.1 FIG00954739: hypothetical protein compare
Pf6N2E2_4464 -0.7 -1.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_2855 -0.7 -1.8 DGPFAETKE compare
Pf6N2E2_1085 -0.7 -1.9 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_5986 -0.7 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_20 -0.7 -2.5 pyoverdine-specific efflux macA-like protein compare
Pf6N2E2_2277 -0.7 -1.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_865 -0.7 -1.2 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2425 -0.7 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2869 -0.7 -1.1 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2261 -0.7 -3.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_2317 -0.7 -2.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4918 -0.7 -1.3 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_6029 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_3720 -0.7 -1.6 FIG027190: Putative transmembrane protein compare
Pf6N2E2_6045 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_2835 -0.7 -1.0 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_1734 -0.7 -3.0 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf6N2E2_2080 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_5006 -0.7 -3.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2012 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_1838 -0.7 -1.4 6-hexanolactone hydrolase compare
Pf6N2E2_3908 -0.7 -3.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_1131 -0.7 -2.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_5242 -0.7 -1.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5111 -0.7 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5103 -0.7 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5820 -0.7 -1.7 FIG00957914: hypothetical protein compare
Pf6N2E2_2264 -0.7 -1.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_608 -0.7 -2.8 Transcriptional regulator of the arabinose operon in Shewanella, GntR family compare
Pf6N2E2_302 -0.7 -2.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4159 -0.7 -1.5 Cytochrome c4 compare
Pf6N2E2_2189 -0.7 -2.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1632 -0.7 -2.5 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Aluminum chloride hydrate across organisms