Experiment set5IT030 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Glucosamine Hydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -5.0 -3.4 3-isopropylmalate dehydratase compare
AO353_13070 -4.9 -7.6 phosphoserine phosphatase compare
AO353_05115 -4.7 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_21740 -4.7 -10.5 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) conserved
AO353_20635 -4.6 -13.0 3-isopropylmalate dehydrogenase compare
AO353_07220 -4.6 -7.7 anthranilate synthase compare
AO353_12085 -4.5 -9.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12070 -4.4 -9.0 imidazoleglycerol-phosphate dehydratase compare
AO353_12520 -4.4 -12.6 glutamate synthase compare
AO353_08345 -4.3 -9.1 dihydroxy-acid dehydratase compare
AO353_20620 -4.3 -9.0 isopropylmalate isomerase compare
AO353_07230 -4.2 -18.1 anthranilate synthase compare
AO353_20665 -4.1 -12.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_13165 -4.1 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_21720 -4.1 -11.2 ABC transporter for D-glucosamine, permease component 2 (from data) conserved
AO353_22945 -4.0 -16.5 glycogen branching protein compare
AO353_12515 -3.9 -23.1 glutamate synthase compare
AO353_02075 -3.9 -13.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_21710 -3.9 -11.2 ABC transporter for D-glucosamine, periplasmic substrate-binding component (from data) conserved
AO353_14505 -3.9 -14.6 ketol-acid reductoisomerase compare
AO353_12090 -3.9 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08180 -3.9 -14.0 homoserine O-acetyltransferase compare
AO353_07215 -3.8 -8.8 anthranilate phosphoribosyltransferase compare
AO353_10710 -3.8 -4.5 tryptophan synthase subunit beta compare
AO353_12075 -3.8 -9.7 imidazole glycerol phosphate synthase subunit HisH compare
AO353_21715 -3.8 -11.2 ABC transporter for D-glucosamine, permease component 1 (from data) conserved
AO353_05110 -3.7 -12.5 histidinol dehydrogenase compare
AO353_00310 -3.7 -12.1 transaldolase compare
AO353_12500 -3.7 -2.5 shikimate kinase compare
AO353_12365 -3.6 -5.4 phosphoribosyl-AMP cyclohydrolase compare
AO353_01375 -3.6 -9.5 phosphate acyltransferase compare
AO353_08510 -3.5 -6.7 3-phosphoglycerate dehydrogenase compare
AO353_04155 -3.5 -13.9 ornithine carbamoyltransferase compare
AO353_07210 -3.5 -6.7 indole-3-glycerol-phosphate synthase compare
AO353_03630 -3.4 -16.1 porin compare
AO353_04105 -3.4 -9.6 argininosuccinate synthase compare
AO353_08685 -3.4 -8.8 N-acetylglutamate synthase compare
AO353_12145 -3.4 -6.1 nitrogen regulation protein NR(I) compare
AO353_08185 -3.4 -10.5 methionine biosynthesis protein MetW compare
AO353_02710 -3.3 -14.5 (p)ppGpp synthetase compare
AO353_12150 -3.2 -6.9 histidine kinase compare
AO353_14500 -3.2 -8.7 acetolactate synthase 3 regulatory subunit compare
AO353_14495 -3.2 -13.7 acetolactate synthase 3 catalytic subunit compare
AO353_20695 -3.1 -8.0 O-succinylhomoserine sulfhydrylase compare
AO353_20095 -3.1 -6.9 histidine kinase compare
AO353_16450 -3.1 -15.4 protein-PII uridylyltransferase compare
AO353_08015 -3.0 -8.5 5,10-methylenetetrahydrofolate reductase compare
AO353_12115 -3.0 -3.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08115 -2.9 -9.1 energy transducer TonB compare
AO353_09000 -2.9 -6.5 argininosuccinate lyase compare
AO353_15295 -2.9 -9.1 division/cell wall cluster transcriptional repressor MraZ compare
AO353_02070 -2.9 -9.4 prephenate dehydratase compare
AO353_09240 -2.8 -3.3 acetylglutamate kinase compare
AO353_07155 -2.8 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_11750 -2.7 -3.6 ATPase compare
AO353_03590 -2.6 -5.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_01550 -2.6 -6.4 hypothetical protein compare
AO353_15925 -2.5 -9.8 2-isopropylmalate synthase compare
AO353_06045 -2.4 -8.7 exodeoxyribonuclease V subunit beta compare
AO353_06040 -2.4 -4.8 exodeoxyribonuclease V subunit alpha compare
AO353_06495 -2.4 -4.8 gamma-glutamyl phosphate reductase compare
AO353_20540 -2.4 -8.1 aromatic amino acid aminotransferase compare
AO353_08165 -2.3 -4.2 pyrroline-5-carboxylate reductase compare
AO353_08475 -2.3 -8.8 phosphoserine phosphatase compare
AO353_05690 -2.3 -4.6 SsrA-binding protein compare
AO353_11165 -2.2 -10.6 hypothetical protein compare
AO353_20175 -2.1 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_14400 -2.0 -5.4 Fis family transcriptional regulator compare
AO353_14115 -2.0 -6.5 gamma-glutamyl kinase compare
AO353_03580 -2.0 -4.7 ATP-dependent DNA helicase RuvB compare
AO353_00105 -2.0 -3.2 hypothetical protein compare
AO353_02040 -1.9 -3.8 integration host factor subunit beta compare
AO353_06050 -1.9 -7.8 exodeoxyribonuclease V subunit gamma compare
AO353_02250 -1.9 -2.9 chorismate synthase compare
AO353_04220 -1.9 -5.3 chemotaxis protein CheY compare
AO353_01080 -1.9 -9.5 hypothetical protein compare
AO353_00825 -1.8 -4.0 porin compare
AO353_12690 -1.8 -1.5 acyl carrier protein compare
AO353_24130 -1.8 -4.2 hypothetical protein compare
AO353_27650 -1.8 -4.4 cell division protein FtsK compare
AO353_10035 -1.8 -8.2 LysR family transcriptional regulator compare
AO353_14420 -1.8 -4.8 molecular chaperone DnaK compare
AO353_04455 -1.7 -6.8 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) conserved
AO353_10030 -1.7 -8.4 pyruvate carboxylase subunit A compare
AO353_23385 -1.7 -5.8 trans-2-enoyl-CoA reductase compare
AO353_04355 -1.7 -2.7 homoserine dehydrogenase compare
AO353_22800 -1.7 -3.6 sulfite reductase compare
AO353_12390 -1.7 -3.6 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_09045 -1.6 -2.0 hypothetical protein compare
AO353_13140 -1.6 -6.0 tRNA dimethylallyltransferase compare
AO353_10430 -1.6 -4.2 chromosome partitioning protein ParB compare
AO353_08780 -1.6 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_05010 -1.5 -2.7 HopJ type III effector protein compare
AO353_18780 -1.5 -4.2 cobyrinic acid a,c-diamide synthase compare
AO353_10025 -1.5 -9.3 pyruvate carboxylase subunit B compare
AO353_02000 -1.5 -3.1 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_09070 -1.5 -8.8 ammonia channel protein compare
AO353_23495 -1.4 -2.5 SAM-dependent methyltransferase compare
AO353_01975 -1.4 -7.2 glycosyl transferase compare
AO353_06670 -1.4 -4.2 MFS transporter compare
AO353_10705 -1.4 -3.4 tryptophan synthase subunit alpha compare
AO353_27435 -1.4 -2.5 hypothetical protein compare
AO353_03360 -1.4 -6.6 glucose-6-phosphate dehydrogenase compare
AO353_20185 -1.4 -5.5 DNA-binding protein compare
AO353_03515 -1.4 -2.1 cold-shock protein compare
AO353_20840 -1.4 -2.7 ribose pyranase compare
AO353_15250 -1.4 -3.6 cytochrome B compare
AO353_27725 -1.3 -3.4 GNAT family acetyltransferase compare
AO353_14370 -1.3 -4.3 glucose-6-phosphate isomerase compare
AO353_10670 -1.3 -5.2 shikimate dehydrogenase compare
AO353_17205 -1.3 -3.2 beta-ketoadipyl CoA thiolase compare
AO353_02060 -1.2 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_03245 -1.2 -5.8 permease DsdX compare
AO353_17785 -1.2 -2.4 hypothetical protein compare
AO353_02220 -1.2 -1.5 hypothetical protein compare
AO353_02720 -1.2 -5.0 cysteine synthase compare
AO353_07520 -1.2 -7.8 8-amino-7-oxononanoate synthase compare
AO353_02025 -1.2 -7.1 mannose-1-phosphate guanyltransferase compare
AO353_01015 -1.2 -2.6 hypothetical protein compare
AO353_03710 -1.1 -2.5 formyltetrahydrofolate deformylase compare
AO353_15480 -1.1 -2.3 hypothetical protein compare
AO353_03020 -1.1 -5.2 arginine N-succinyltransferase compare
AO353_23170 -1.1 -3.8 short-chain dehydrogenase compare
AO353_02810 -1.1 -5.0 histidine kinase compare
AO353_01990 -1.1 -5.2 UDP-N-acetylglucosamine 2-epimerase compare
AO353_05225 -1.1 -7.9 hypothetical protein compare
AO353_11340 -1.0 -1.8 MarR family transcriptional regulator compare
AO353_19055 -1.0 -4.6 universal stress protein UspA compare
AO353_14150 -1.0 -1.3 peptidylprolyl isomerase compare
AO353_29215 -1.0 -1.8 alpha/beta hydrolase compare
AO353_06405 -1.0 -3.1 hypothetical protein compare
AO353_13395 -1.0 -2.4 protein hupE compare
AO353_00750 -1.0 -3.6 GntR family transcriptional regulator compare
AO353_07505 -1.0 -4.6 dethiobiotin synthetase compare
AO353_01995 -1.0 -7.1 hypothetical protein compare
AO353_02020 -0.9 -2.8 hypothetical protein compare
AO353_22935 -0.9 -5.6 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO353_07525 -0.9 -6.3 biotin synthase compare
AO353_16805 -0.9 -3.3 recombinase RecA compare
AO353_13245 -0.9 -5.0 hypothetical protein compare
AO353_02685 -0.9 -2.6 phosphoribosylglycinamide formyltransferase compare
AO353_11850 -0.9 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_28945 -0.9 -1.8 potassium-transporting ATPase subunit B compare
AO353_16940 -0.9 -3.4 deoxycytidine triphosphate deaminase compare
AO353_08100 -0.9 -1.9 chemotaxis protein CheY compare
AO353_15905 -0.9 -4.0 outer membrane protein assembly factor BamB compare
AO353_07075 -0.9 -3.6 elongation factor Tu compare
AO353_03420 -0.9 -3.3 phosphogluconate dehydratase compare
AO353_10435 -0.9 -4.8 chromosome partitioning protein compare
AO353_01970 -0.9 -5.2 hypothetical protein compare
AO353_19360 -0.9 -1.3 peroxiredoxin compare
AO353_01985 -0.9 -5.3 hypothetical protein compare
AO353_20170 -0.9 -3.6 trigger factor compare
AO353_03615 -0.9 -2.3 cold-shock protein compare
AO353_21625 -0.9 -1.7 Fe/S biogenesis protein NfuA compare
AO353_07315 -0.9 -1.3 rRNA methyltransferase compare
AO353_27535 -0.9 -2.5 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_03415 -0.9 -3.5 glucokinase compare
AO353_12765 -0.9 -1.5 transcriptional regulator compare
AO353_03545 -0.9 -3.6 hypothetical protein compare
AO353_03250 -0.8 -1.6 gluconokinase compare
AO353_03585 -0.8 -2.0 ATP-dependent DNA helicase RuvA compare
AO353_00490 -0.8 -1.8 PasA protein compare
AO353_14595 -0.8 -4.5 carbonate dehydratase compare
AO353_06745 -0.8 -1.7 zinc-binding protein compare
AO353_12350 -0.8 -2.2 preprotein translocase compare
AO353_15825 -0.8 -2.1 serine acetyltransferase compare
AO353_09050 -0.8 -2.2 recombinase XerC compare
AO353_26885 -0.8 -4.2 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
AO353_21665 -0.8 -2.7 magnesium chelatase compare
AO353_05420 -0.8 -1.5 peptide chain release factor 3 compare
AO353_02010 -0.8 -3.1 glycosyl transferase family 1 compare
AO353_22940 -0.8 -5.5 alpha-amylase compare
AO353_12015 -0.8 -1.6 antitoxin compare
AO353_08045 -0.8 -5.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_20585 -0.8 -2.4 TetR family transcriptional regulator compare
AO353_11635 -0.8 -3.2 ABC transporter compare
AO353_11530 -0.8 -4.2 diguanylate cyclase compare
AO353_04240 -0.8 -1.6 chemotaxis protein CheW compare
AO353_02320 -0.8 -3.5 allantoinase compare
AO353_08035 -0.8 -3.4 hypothetical protein compare
AO353_13640 -0.8 -2.4 histidine kinase compare
AO353_22375 -0.8 -2.2 cytochrome c-550 PedF compare
AO353_27375 -0.8 -2.1 DNA packaging protein compare
AO353_12080 -0.8 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_21635 -0.8 -2.6 cobalamin biosynthesis protein CobE compare
AO353_18285 -0.8 -1.6 3-phosphoglycerate kinase compare
AO353_09235 -0.8 -3.4 phosphoglucomutase compare
AO353_14930 -0.8 -2.3 GntR family transcriptional regulator compare
AO353_07510 -0.8 -5.0 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_20785 -0.7 -2.7 carbon storage regulator CsrA compare
AO353_03025 -0.7 -2.9 acetylornithine aminotransferase compare
AO353_21640 -0.7 -1.4 cobalt transporter compare
AO353_12940 -0.7 -3.3 glycosyl transferase compare
AO353_08465 -0.7 -5.8 phosphoenolpyruvate-protein phosphotransferase compare
AO353_00810 -0.7 -1.8 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_07270 -0.7 -1.6 transcriptional regulator compare
AO353_24600 -0.7 -2.1 hypothetical protein compare
AO353_16195 -0.7 -1.2 DNA mismatch repair protein MutT compare
AO353_01595 -0.7 -1.8 Flp pilus assembly protein CpaB compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source D-Glucosamine Hydrochloride in Pseudomonas fluorescens FW300-N2E3

For nitrogen source D-Glucosamine Hydrochloride across organisms