Experiment set5IT030 for Pantoea sp. MT58
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Group: survivalMedia: + Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Culturing: MT058_ML2, tube, Aerobic, at 30 (C)
By: Mike Thorgersen on 09/14/2021
Specific Phenotypes
For 1 genes in this experiment
For survival Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58
For survival Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Choline and Betaine Uptake and Betaine Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glycine betaine biosynthesis II (Gram-positive bacteria) | 2 | 2 | 1 |
| glycine betaine biosynthesis I (Gram-negative bacteria) | 2 | 2 | 1 |
| choline degradation I | 2 | 2 | 1 |
| β-alanine biosynthesis I | 2 | 1 | 1 |
| β-alanine biosynthesis IV | 2 | 1 | 1 |
| glycine betaine biosynthesis III (plants) | 3 | 2 | 1 |
| choline-O-sulfate degradation | 3 | 2 | 1 |
| dimethylsulfoniopropanoate biosynthesis I (Wollastonia) | 3 | 1 | 1 |
| choline degradation IV | 4 | 2 | 1 |
| dimethylsulfoniopropanoate biosynthesis II (Spartina) | 4 | 1 | 1 |