Experiment set5IT030 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Chenodeoxycholic acid 1.3 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10740 -5.3 -3.6 tRNA-Gly compare
BBR_RS18565 -3.4 -2.3 CHAP domain-containing protein compare
BBR_RS16955 -3.1 -3.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS20480 -2.9 -1.3 membrane protein compare
BBR_RS19450 -2.9 -2.0 GTPase ObgE compare
BBR_RS14540 -2.6 -3.0 Na+/H+ antiporter NhaA compare
BBR_RS12235 -2.4 -1.5 hypothetical protein compare
BBR_RS16750 -2.1 -3.2 ParA family protein compare
BBR_RS13040 -2.1 -1.4 CHAP domain-containing protein compare
BBR_RS16245 -1.9 -3.4 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS16275 -1.8 -1.8 leucine--tRNA ligase compare
BBR_RS11510 -1.8 -1.7 signal recognition particle-docking protein FtsY compare
BBR_RS17135 -1.8 -1.2 RluA family pseudouridine synthase compare
BBR_RS12295 -1.8 -1.4 RNA-binding protein compare
BBR_RS20775 -1.8 -1.8 DUF4230 domain-containing protein compare
BBR_RS16540 -1.7 -5.3 XRE family transcriptional regulator compare
BBR_RS13730 -1.7 -8.3 hypothetical protein compare
BBR_RS15755 -1.7 -2.1 hypothetical protein compare
BBR_RS20465 -1.7 -6.6 chromosome partitioning protein compare
BBR_RS18725 -1.6 -2.8 ribonuclease HI compare
BBR_RS14265 -1.6 -4.3 Solute-binding protein of ABC transporter system for metals compare
BBR_RS19125 -1.6 -7.0 hypothetical protein compare
BBR_RS14080 -1.5 -2.3 hypothetical protein compare
BBR_RS18180 -1.5 -7.9 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS17370 -1.5 -6.1 ABC transporter substrate-binding protein compare
BBR_RS16425 -1.5 -2.6 DUF3071 domain-containing protein compare
BBR_RS18735 -1.5 -6.5 hypothetical protein compare
BBR_RS11460 -1.5 -10.8 hypothetical protein compare
BBR_RS16820 -1.5 -2.9 RNA polymerase sigma factor RpoE compare
BBR_RS13030 -1.4 -1.0 cell division ATP-binding protein FtsE compare
BBR_RS20705 -1.4 -2.6 hypothetical protein compare
BBR_RS17365 -1.4 -4.6 ABC transporter permease compare
BBR_RS10905 -1.4 -3.8 nucleotide exchange factor GrpE compare
BBR_RS16635 -1.3 -2.1 ABC transporter ATP-binding protein compare
BBR_RS20460 -1.3 -2.9 chromosome partitioning protein ParB compare
BBR_RS13035 -1.3 -0.9 ABC transporter permease compare
BBR_RS15785 -1.3 -1.4 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS17905 -1.2 -11.7 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS16685 -1.2 -1.6 alcohol dehydrogenase compare
BBR_RS16595 -1.2 -3.3 N-acetyltransferase compare
BBR_RS16905 -1.2 -3.9 hypothetical protein compare
BBR_RS15180 -1.2 -5.4 long-chain fatty acid--CoA ligase compare
BBR_RS19120 -1.2 -5.3 helicase compare
BBR_RS14365 -1.2 -4.1 hypothetical protein compare
BBR_RS19755 -1.2 -6.6 glycosyl transferase compare
BBR_RS15650 -1.2 -1.9 Holliday junction resolvase compare
BBR_RS14075 -1.2 -4.3 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS12860 -1.2 -7.1 DUF2183 domain-containing protein compare
BBR_RS20855 -1.2 -3.0 hypothetical protein compare
BBR_RS19325 -1.2 -1.9 hypothetical protein compare
BBR_RS16975 -1.2 -3.2 transcriptional repressor NrdR compare
BBR_RS13820 -1.2 -1.4 ATP-binding protein compare
BBR_RS15055 -1.1 -2.2 hypothetical protein compare
BBR_RS15050 -1.1 -1.9 DUF948 domain-containing protein compare
BBR_RS14190 -1.1 -4.9 transcriptional regulator compare
BBR_RS16490 -1.1 -2.9 polyprenyl synthase compare
BBR_RS14230 -1.1 -3.7 HAMP domain-containing histidine kinase compare
BBR_RS17360 -1.1 -5.4 amino acid ABC transporter permease compare
BBR_RS10255 -1.1 -1.3 chromosomal replication initiator protein DnaA compare
BBR_RS20200 -1.1 -9.9 alpha-galactosidase compare
BBR_RS14210 -1.1 -0.7 hypothetical protein compare
BBR_RS10940 -1.1 -6.6 DedA family protein compare
BBR_RS19095 -1.1 -7.0 magnesium transporter compare
BBR_RS13830 -1.1 -0.9 DUF4191 domain-containing protein compare
BBR_RS17375 -1.1 -4.2 amino acid ABC transporter ATP-binding protein compare
BBR_RS12375 -1.0 -1.1 pantetheine-phosphate adenylyltransferase compare
BBR_RS12045 -1.0 -3.0 hypothetical protein compare
BBR_RS20795 -1.0 -1.4 cystathionine gamma-lyase compare
BBR_RS14550 -1.0 -4.1 hypothetical protein compare
BBR_RS10570 -0.9 -2.6 hypothetical protein compare
BBR_RS17490 -0.9 -5.4 MoxR family ATPase compare
BBR_RS10640 -0.9 -7.0 alpha/beta hydrolase compare
BBR_RS15325 -0.9 -2.5 hypothetical protein compare
BBR_RS14380 -0.9 -6.2 phosphate acetyltransferase compare
BBR_RS17510 -0.9 -3.6 VWA domain-containing protein compare
BBR_RS19270 -0.9 -0.7 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS19305 -0.9 -6.5 ribokinase compare
BBR_RS13735 -0.9 -1.1 Lon protease compare
BBR_RS14330 -0.9 -1.1 glycogen debranching enzyme GlgX compare
BBR_RS18635 -0.8 -3.5 PspC domain-containing protein compare
BBR_RS14200 -0.8 -2.5 WhiB family transcriptional regulator compare
BBR_RS14215 -0.8 -1.7 peptidase compare
BBR_RS16940 -0.8 -2.4 hypothetical protein compare
BBR_RS13985 -0.8 -2.5 membrane protein compare
BBR_RS12915 -0.8 -3.0 glycine synthesis protein GlyXS (from data) compare
BBR_RS16605 -0.8 -4.1 hypothetical protein compare
BBR_RS11540 -0.8 -1.6 DUF1727 domain-containing protein compare
BBR_RS18325 -0.8 -2.9 DNA-binding protein compare
BBR_RS19345 -0.8 -3.1 tRNA-Val compare
BBR_RS12785 -0.8 -1.8 transcriptional regulator compare
BBR_RS16655 -0.8 -2.2 tyrosine recombinase XerC compare
BBR_RS10720 -0.8 -6.0 PDZ domain-containing protein compare
BBR_RS14745 -0.7 -5.2 MFS transporter compare
BBR_RS12985 -0.7 -3.1 MFS transporter compare
BBR_RS18690 -0.7 -3.4 diacylglycerol kinase compare
BBR_RS16250 -0.7 -2.3 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS11665 -0.7 -2.2 hypothetical protein compare
BBR_RS17640 -0.7 -0.7 DNA-directed RNA polymerase subunit omega compare
BBR_RS17155 -0.7 -0.7 cell division protein SepF compare
BBR_RS15760 -0.7 -1.3 MerR family transcriptional regulator compare
BBR_RS20825 -0.7 -1.4 hypothetical protein compare
BBR_RS19370 -0.6 -1.8 type I polyketide synthase compare
BBR_RS15730 -0.6 -1.5 hypothetical protein compare
BBR_RS16965 -0.6 -0.4 ATP-dependent DNA helicase compare
BBR_RS18485 -0.6 -1.5 IS30 family transposase compare
BBR_RS12805 -0.6 -2.1 hypothetical protein compare
BBR_RS14980 -0.6 -2.2 xanthine phosphoribosyltransferase compare
BBR_RS16610 -0.6 -2.4 hypothetical protein compare
BBR_RS10285 -0.6 -0.7 membrane protein compare
BBR_RS21165 -0.6 -2.0 hypothetical protein compare
BBR_RS11505 -0.6 -4.5 TetR/AcrR family transcriptional regulator compare
BBR_RS18050 -0.6 -0.8 threonylcarbamoyl-AMP synthase compare
BBR_RS17505 -0.6 -3.4 VWA domain-containing protein compare
BBR_RS13490 -0.6 -0.7 30S ribosomal protein S7 compare
BBR_RS12590 -0.6 -1.2 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS20475 -0.6 -4.6 KH domain-containing protein compare
BBR_RS16195 -0.6 -2.0 hypothetical protein compare
BBR_RS14205 -0.6 -1.4 hypothetical protein compare
BBR_RS19650 -0.6 -4.6 NUDIX hydrolase compare
BBR_RS13015 -0.5 -2.4 peptide deformylase compare
BBR_RS20440 -0.5 -2.0 NUDIX hydrolase compare
BBR_RS15880 -0.5 -1.7 hypothetical protein compare
BBR_RS19395 -0.5 -1.3 hypothetical protein compare
BBR_RS15750 -0.5 -0.6 hypothetical protein compare
BBR_RS17515 -0.5 -2.6 hypothetical protein compare
BBR_RS12940 -0.5 -2.8 hypothetical protein compare
BBR_RS12500 -0.5 -0.4 sugar ABC transporter permease compare
BBR_RS14585 -0.5 -0.6 hypothetical protein compare
BBR_RS10910 -0.5 -3.5 molecular chaperone DnaJ compare
BBR_RS15320 -0.5 -1.4 hypothetical protein compare
BBR_RS10625 -0.5 -0.8 FHA domain-containing protein compare
BBR_RS20715 -0.5 -1.6 hypothetical protein compare
BBR_RS10620 -0.5 -1.2 phosphoprotein phosphatase compare
BBR_RS13200 -0.5 -2.5 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
BBR_RS16075 -0.5 -2.0 hypothetical protein compare
BBR_RS17495 -0.5 -2.8 DUF58 domain-containing protein compare
BBR_RS21005 -0.5 -1.7 hypothetical protein compare
BBR_RS12325 -0.5 -2.6 type 1 glutamine amidotransferase compare
BBR_RS14280 -0.5 -1.5 dephospho-CoA kinase compare
BBR_RS14475 -0.5 -2.7 formate C-acetyltransferase compare
BBR_RS12460 -0.5 -2.5 LacI family DNA-binding transcriptional regulator compare
BBR_RS16670 -0.5 -1.7 hypothetical protein compare
BBR_RS18955 -0.5 -3.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS14290 -0.5 -1.9 TerC family protein compare
BBR_RS20450 -0.5 -3.8 murein biosynthesis integral membrane protein MurJ compare
BBR_RS12180 -0.5 -3.7 DUF2974 domain-containing protein compare
BBR_RS18140 -0.5 -0.5 tRNA-Asp compare
BBR_RS20810 -0.4 -1.2 pirin compare
BBR_RS20785 -0.4 -1.1 PadR family transcriptional regulator compare
BBR_RS17500 -0.4 -2.2 hypothetical protein compare
BBR_RS15400 -0.4 -2.8 phosphohistidine phosphatase compare
BBR_RS17290 -0.4 -2.2 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS12975 -0.4 -2.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS20770 -0.4 -1.5 30S ribosomal protein S14 compare
BBR_RS12450 -0.4 -1.1 signal peptidase I compare
BBR_RS14735 -0.4 -2.3 TetR family transcriptional regulator compare
BBR_RS10900 -0.4 -0.5 molecular chaperone DnaK compare
BBR_RS10990 -0.4 -1.9 recombination protein RecR compare
BBR_RS21170 -0.4 -2.5 membrane protein insertion efficiency factor YidD compare
BBR_RS13845 -0.4 -2.4 dipeptidase compare
BBR_RS20090 -0.4 -2.6 DUF4235 domain-containing protein compare
BBR_RS16140 -0.4 -2.1 long-chain fatty acid--CoA ligase compare
BBR_RS20470 -0.4 -3.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
BBR_RS11720 -0.4 -1.6 DUF2469 domain-containing protein compare
BBR_RS15660 -0.4 -1.2 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS13805 -0.4 -0.5 hypothetical protein compare
BBR_RS20750 -0.4 -1.1 GntR family transcriptional regulator compare
BBR_RS19750 -0.4 -3.5 LTA synthase family protein compare
BBR_RS14000 -0.4 -2.5 hypothetical protein compare
BBR_RS10310 -0.4 -3.7 NADP-specific glutamate dehydrogenase compare
BBR_RS11500 -0.4 -3.0 glycosyltransferase family 2 protein compare
BBR_RS13650 -0.4 -1.7 3'-5' exonuclease compare
BBR_RS19170 -0.4 -3.1 DNA-binding response regulator compare
BBR_RS20430 -0.4 -0.4 hypothetical protein compare
BBR_RS19260 -0.4 -3.0 hypothetical protein compare
BBR_RS14065 -0.4 -1.3 TnpV protein compare
BBR_RS19805 -0.4 -3.5 glycosyl hydrolase family 25,lysozyme compare
BBR_RS11835 -0.4 -1.8 ribbon-helix-helix protein, CopG family compare
BBR_RS19155 -0.4 -2.0 phosphate ABC transporter, permease protein PstA compare
BBR_RS11590 -0.4 -0.3 30S ribosomal protein S18 compare
BBR_RS13005 -0.4 -2.9 aminopeptidase N compare
BBR_RS20905 -0.4 -1.7 hypothetical protein compare
BBR_RS14890 -0.4 -1.9 inorganic phosphate transporter compare
BBR_RS15970 -0.4 -1.6 hypothetical protein compare
BBR_RS17275 -0.4 -2.2 nitroreductase compare
BBR_RS11635 -0.4 -2.1 hypothetical protein compare
BBR_RS20755 -0.4 -1.6 IS3 family transposase compare
BBR_RS12980 -0.4 -2.5 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS14960 -0.4 -1.4 alpha/beta hydrolase compare
BBR_RS10565 -0.4 -3.4 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS17475 -0.4 -1.3 cold-shock protein compare
BBR_RS20935 -0.4 -1.2 hypothetical protein compare
BBR_RS16170 -0.4 -0.7 hypothetical protein compare
BBR_RS15675 -0.4 -1.8 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS15825 -0.4 -2.5 deoxyribonuclease IV compare
BBR_RS12925 -0.3 -1.2 hypothetical protein compare
BBR_RS15810 -0.3 -2.0 tryptophan synthase subunit alpha compare
BBR_RS10915 -0.3 -1.3 MerR family DNA-binding transcriptional regulator compare
BBR_RS13255 -0.3 -1.6 hypothetical protein compare
BBR_RS18185 -0.3 -1.1 hypoxanthine phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Chenodeoxycholic acid across organisms