Experiment set5IT028 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -5.0 -3.5 3-isopropylmalate dehydratase compare
AO353_07220 -4.8 -7.4 anthranilate synthase compare
AO353_12070 -4.7 -7.9 imidazoleglycerol-phosphate dehydratase compare
AO353_02070 -4.7 -6.4 prephenate dehydratase compare
AO353_12520 -4.5 -12.0 glutamate synthase compare
AO353_20665 -4.5 -11.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07230 -4.4 -18.0 anthranilate synthase compare
AO353_05115 -4.4 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12085 -4.4 -9.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_13070 -4.3 -9.6 phosphoserine phosphatase compare
AO353_20635 -4.3 -15.1 3-isopropylmalate dehydrogenase compare
AO353_13165 -4.3 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08475 -4.2 -10.9 phosphoserine phosphatase compare
AO353_07210 -4.2 -5.7 indole-3-glycerol-phosphate synthase compare
AO353_20695 -4.2 -8.2 O-succinylhomoserine sulfhydrylase compare
AO353_14505 -4.1 -14.1 ketol-acid reductoisomerase compare
AO353_00310 -4.1 -12.0 transaldolase compare
AO353_10670 -4.0 -9.7 shikimate dehydrogenase compare
AO353_08185 -4.0 -11.7 methionine biosynthesis protein MetW compare
AO353_12090 -3.9 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08345 -3.9 -10.7 dihydroxy-acid dehydratase compare
AO353_02075 -3.9 -13.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20620 -3.8 -7.8 isopropylmalate isomerase compare
AO353_12515 -3.8 -23.9 glutamate synthase compare
AO353_19060 -3.8 -5.7 CysB family transcriptional regulator compare
AO353_05110 -3.7 -13.0 histidinol dehydrogenase compare
AO353_12500 -3.7 -2.6 shikimate kinase compare
AO353_12075 -3.7 -10.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07155 -3.7 -6.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12365 -3.7 -5.6 phosphoribosyl-AMP cyclohydrolase compare
AO353_14500 -3.7 -8.8 acetolactate synthase 3 regulatory subunit compare
AO353_09000 -3.6 -5.5 argininosuccinate lyase compare
AO353_08180 -3.6 -15.4 homoserine O-acetyltransferase compare
AO353_08685 -3.5 -9.1 N-acetylglutamate synthase compare
AO353_06495 -3.5 -7.7 gamma-glutamyl phosphate reductase compare
AO353_18715 -3.5 -3.3 histidine kinase compare
AO353_08510 -3.5 -7.0 3-phosphoglycerate dehydrogenase compare
AO353_03360 -3.4 -10.5 glucose-6-phosphate dehydrogenase compare
AO353_07215 -3.4 -9.8 anthranilate phosphoribosyltransferase compare
AO353_07525 -3.4 -16.3 biotin synthase compare
AO353_07515 -3.4 -3.3 transporter compare
AO353_12115 -3.4 -3.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_14495 -3.4 -13.7 acetolactate synthase 3 catalytic subunit compare
AO353_22800 -3.3 -5.0 sulfite reductase compare
AO353_03415 -3.3 -8.3 glucokinase compare
AO353_07510 -3.3 -12.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_14115 -3.3 -8.9 gamma-glutamyl kinase compare
AO353_12360 -3.2 -10.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_07505 -3.2 -11.5 dethiobiotin synthetase compare
AO353_14400 -3.2 -5.7 Fis family transcriptional regulator compare
AO353_04105 -3.1 -10.8 argininosuccinate synthase compare
AO353_07520 -3.1 -15.1 8-amino-7-oxononanoate synthase compare
AO353_14595 -3.1 -10.5 carbonate dehydratase compare
AO353_11505 -3.1 -12.8 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) conserved
AO353_12145 -3.1 -6.5 nitrogen regulation protein NR(I) compare
AO353_10710 -3.1 -6.2 tryptophan synthase subunit beta compare
AO353_20540 -3.1 -8.5 aromatic amino acid aminotransferase compare
AO353_08165 -3.1 -4.1 pyrroline-5-carboxylate reductase compare
AO353_04155 -3.0 -13.0 ornithine carbamoyltransferase compare
AO353_09240 -3.0 -2.9 acetylglutamate kinase compare
AO353_15925 -2.9 -11.0 2-isopropylmalate synthase compare
AO353_08045 -2.9 -15.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_05520 -2.8 -6.8 nicotinate-nucleotide pyrophosphorylase compare
AO353_13160 -2.7 -3.9 membrane protease HflC compare
AO353_08015 -2.7 -9.5 5,10-methylenetetrahydrofolate reductase compare
AO353_09285 -2.6 -11.6 reactive intermediate/imine deaminase compare
AO353_11770 -2.6 -1.8 molecular chaperone Hsp33 compare
AO353_08780 -2.6 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_01375 -2.5 -7.6 phosphate acyltransferase compare
AO353_02685 -2.4 -4.2 phosphoribosylglycinamide formyltransferase compare
AO353_16940 -2.4 -7.0 deoxycytidine triphosphate deaminase compare
AO353_14420 -2.4 -5.6 molecular chaperone DnaK compare
AO353_07355 -2.3 -7.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_07315 -2.2 -3.0 rRNA methyltransferase compare
AO353_05105 -2.2 -9.3 histidinol-phosphate aminotransferase compare
AO353_03795 -2.2 -5.6 fumarate hydratase compare
AO353_00825 -2.2 -5.6 porin compare
AO353_02250 -2.2 -3.6 chorismate synthase compare
AO353_03525 -2.2 -9.3 quinolinate synthase A compare
AO353_11165 -2.1 -10.3 hypothetical protein compare
AO353_13100 -2.1 -2.4 GTPase RsgA compare
AO353_03420 -2.0 -5.9 phosphogluconate dehydratase compare
AO353_16450 -2.0 -11.2 protein-PII uridylyltransferase compare
AO353_03580 -2.0 -4.6 ATP-dependent DNA helicase RuvB compare
AO353_06720 -2.0 -3.0 NrdR family transcriptional regulator compare
AO353_02710 -2.0 -11.3 (p)ppGpp synthetase compare
AO353_03615 -2.0 -4.3 cold-shock protein compare
AO353_03245 -1.9 -8.1 permease DsdX compare
AO353_08595 -1.9 -10.1 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
AO353_05690 -1.8 -4.2 SsrA-binding protein compare
AO353_10030 -1.8 -9.5 pyruvate carboxylase subunit A compare
AO353_00650 -1.7 -2.7 cytochrome biogenesis protein compare
AO353_02975 -1.7 -3.4 aspartate kinase compare
AO353_03020 -1.7 -7.4 arginine N-succinyltransferase compare
AO353_02600 -1.7 -2.4 alpha-ribazole phosphatase compare
AO353_02720 -1.7 -5.0 cysteine synthase compare
AO353_13640 -1.7 -4.4 histidine kinase compare
AO353_12345 -1.6 -2.0 twin-arginine protein translocation system subunit TatC compare
AO353_07075 -1.6 -4.5 elongation factor Tu compare
AO353_20175 -1.6 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_13610 -1.6 -3.6 precorrin isomerase compare
AO353_06040 -1.6 -4.1 exodeoxyribonuclease V subunit alpha compare
AO353_17620 -1.5 -10.9 L-aspartate oxidase compare
AO353_10025 -1.5 -9.4 pyruvate carboxylase subunit B compare
AO353_04055 -1.5 -2.9 methionine--tRNA ligase compare
AO353_27650 -1.5 -4.2 cell division protein FtsK compare
AO353_13605 -1.5 -8.5 oxidoreductase compare
AO353_06050 -1.5 -6.7 exodeoxyribonuclease V subunit gamma compare
AO353_08880 -1.5 -2.6 exopolyphosphatase compare
AO353_11850 -1.5 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_10705 -1.4 -3.2 tryptophan synthase subunit alpha compare
AO353_13600 -1.4 -3.0 precorrin-6Y C5,15-methyltransferase compare
AO353_08470 -1.4 -3.3 RNA pyrophosphohydrolase compare
AO353_29315 -1.4 -8.9 spermidine/putrescine ABC transporter permease conserved
AO353_10035 -1.3 -5.2 LysR family transcriptional regulator compare
AO353_18120 -1.3 -3.3 hypothetical protein compare
AO353_24130 -1.3 -2.1 hypothetical protein compare
AO353_14405 -1.3 -7.6 ATPase compare
AO353_04355 -1.3 -1.9 homoserine dehydrogenase compare
AO353_01410 -1.3 -2.6 ribonuclease E compare
AO353_03425 -1.3 -7.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_04565 -1.3 -5.2 nucleoid-associated protein compare
AO353_00495 -1.3 -1.9 DNA topoisomerase I compare
AO353_09890 -1.3 -3.6 phosphate ABC transporter ATP-binding protein compare
AO353_13620 -1.2 -7.5 precorrin-3B C17-methyltransferase compare
AO353_11510 -1.2 -8.0 5-aminovalerate transaminase (EC 2.6.1.48) (from data) conserved
AO353_06045 -1.2 -5.6 exodeoxyribonuclease V subunit beta compare
AO353_18540 -1.2 -2.8 pseudouridine synthase compare
AO353_29320 -1.2 -4.2 putrescine ABC transporter, permease component (from data) compare
AO353_00610 -1.2 -2.0 cytochrome C oxidase Cbb3 compare
AO353_14740 -1.2 -3.3 GTP-binding protein compare
AO353_08580 -1.2 -7.2 spermidine/putrescine ABC transporter substrate-binding protein conserved
AO353_13225 -1.2 -2.8 50S ribosomal protein L9 compare
AO353_13590 -1.2 -4.1 cobalt-precorrin-6X reductase compare
AO353_08265 -1.2 -4.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_20785 -1.2 -4.2 carbon storage regulator CsrA compare
AO353_12105 -1.2 -4.6 peptidase S41 compare
AO353_13140 -1.2 -4.4 tRNA dimethylallyltransferase compare
AO353_20630 -1.2 -5.3 SAM-dependent methyltransferase compare
AO353_21660 -1.1 -7.4 cobalamin biosynthesis protein CobN compare
AO353_00460 -1.1 -2.4 TetR family transcriptional regulator compare
AO353_10445 -1.1 -1.9 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_03250 -1.1 -0.9 gluconokinase compare
AO353_13245 -1.1 -5.2 hypothetical protein compare
AO353_02610 -1.1 -4.2 adenosylcobinamide kinase compare
AO353_02625 -1.1 -6.4 cobalamin biosynthesis protein CobD compare
AO353_02000 -1.1 -2.8 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_14775 -1.1 -4.2 hypothetical protein compare
AO353_10430 -1.1 -3.3 chromosome partitioning protein ParB compare
AO353_02630 -1.1 -2.6 5,6-dimethylbenzimidazole synthase compare
AO353_14150 -1.1 -1.6 peptidylprolyl isomerase compare
AO353_16440 -1.1 -1.9 ArsC family transcriptional regulator compare
AO353_08600 -1.1 -3.2 TetR family transcriptional regulator compare
AO353_16210 -1.1 -6.9 XRE family transcriptional regulator compare
AO353_20835 -1.1 -2.7 Ribokinase (EC 2.7.1.15) (from data) compare
AO353_09155 -1.1 -4.7 amino acid dehydrogenase compare
AO353_03590 -1.1 -2.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_08570 -1.0 -6.4 transporter compare
AO353_02615 -1.0 -5.2 cobyric acid synthase compare
AO353_15785 -1.0 -5.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_10055 -1.0 -6.6 DNA helicase II compare
AO353_13155 -1.0 -3.3 hypothetical protein compare
AO353_04520 -1.0 -4.1 elongation factor 4 compare
AO353_16530 -1.0 -1.4 ribonuclease HII compare
AO353_20170 -1.0 -4.1 trigger factor compare
AO353_21630 -1.0 -2.2 precorrin-4 C11-methyltransferase compare
AO353_08610 -1.0 -2.8 hypothetical protein compare
AO353_08465 -1.0 -7.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_25925 -1.0 -1.5 hypothetical protein compare
AO353_00750 -1.0 -2.2 GntR family transcriptional regulator compare
AO353_29310 -1.0 -5.2 transporter compare
AO353_02040 -1.0 -2.6 integration host factor subunit beta compare
AO353_21615 -1.0 -6.4 methionine synthase compare
AO353_12150 -1.0 -2.9 histidine kinase compare
AO353_04220 -1.0 -2.6 chemotaxis protein CheY compare
AO353_19145 -0.9 -2.6 protease HtpX compare
AO353_07445 -0.9 -1.2 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_27090 -0.9 -1.5 hypothetical protein compare
AO353_19770 -0.9 -1.2 peptidase compare
AO353_24425 -0.9 -1.7 amino acid ABC transporter permease compare
AO353_18005 -0.9 -3.4 allophanate hydrolase compare
AO353_21055 -0.9 -3.3 glycosyl hydrolase compare
AO353_11730 -0.9 -5.1 glutamate--cysteine ligase compare
AO353_14370 -0.9 -3.1 glucose-6-phosphate isomerase compare
AO353_13615 -0.9 -6.5 precorrin-2 C20-methyltransferase compare
AO353_27950 -0.9 -1.5 hypothetical protein compare
AO353_08120 -0.9 -2.4 hypothetical protein compare
AO353_10780 -0.9 -1.2 DNA-binding protein compare
AO353_06155 -0.9 -4.7 copper-transporting ATPase compare
AO353_08485 -0.9 -6.2 threonine dehydratase compare
AO353_08505 -0.9 -5.6 FAD-linked oxidase compare
AO353_19740 -0.9 -3.2 MFS transporter compare
AO353_29305 -0.9 -3.7 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) compare
AO353_08100 -0.9 -1.9 chemotaxis protein CheY compare
AO353_21665 -0.9 -3.4 magnesium chelatase compare
AO353_02640 -0.9 -1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_10435 -0.8 -4.8 chromosome partitioning protein compare
AO353_08640 -0.8 -2.6 hypothetical protein compare
AO353_15250 -0.8 -2.3 cytochrome B compare
AO353_03775 -0.8 -4.7 pyruvate kinase compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Putrescine Dihydrochloride across organisms