Experiment set5IT028 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Minimal media pH9

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_339 -6.4 -3.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1627 -5.0 -3.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1408 -4.9 -5.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_3468 -4.8 -2.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_5665 -4.6 -6.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2695 -4.5 -2.7 Rare lipoprotein A precursor compare
Pf1N1B4_3751 -4.4 -2.8 FIG00953060: hypothetical protein compare
Pf1N1B4_5666 -4.3 -4.2 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2880 -4.3 -15.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_15 -4.3 -6.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_6 -4.2 -6.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1153 -4.2 -4.8 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_1307 -4.2 -3.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3997 -4.1 -5.8 Uncharacterized protein YtfM precursor compare
Pf1N1B4_1831 -4.0 -15.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2338 -3.9 -11.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2283 -3.8 -1.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1624 -3.8 -12.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_742 -3.8 -9.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2489 -3.8 -6.8 Biotin synthesis protein BioH compare
Pf1N1B4_2486 -3.7 -3.3 hypothetical protein compare
Pf1N1B4_3328 -3.7 -2.9 Rhodanese-like domain protein compare
Pf1N1B4_2004 -3.7 -3.4 putative membrane protein compare
Pf1N1B4_1057 -3.7 -4.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_630 -3.7 -7.2 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf1N1B4_3506 -3.7 -8.5 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2272 -3.7 -6.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_4299 -3.6 -4.9 sensor histidine kinase compare
Pf1N1B4_3519 -3.6 -4.7 Lipase (EC 3.1.1.3) compare
Pf1N1B4_2548 -3.6 -9.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2009 -3.6 -6.9 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2545 -3.6 -17.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1434 -3.5 -9.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_958 -3.5 -3.5 Stringent starvation protein B compare
Pf1N1B4_3696 -3.5 -14.2 FIG00955360: hypothetical protein compare
Pf1N1B4_1534 -3.5 -20.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3168 -3.4 -5.1 AmpG permease compare
Pf1N1B4_2549 -3.4 -11.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_58 -3.4 -10.2 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_5824 -3.3 -4.4 Na(+) H(+) antiporter subunit D compare
Pf1N1B4_2303 -3.3 -16.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_626 -3.3 -9.0 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_596 -3.3 -6.6 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf1N1B4_2163 -3.2 -2.3 hypothetical protein compare
Pf1N1B4_1533 -3.2 -12.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2284 -3.2 -5.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2144 -3.2 -10.7 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_327 -3.1 -3.2 hypothetical protein compare
Pf1N1B4_1565 -3.1 -5.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2377 -3.1 -7.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2337 -3.1 -6.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4065 -3.0 -9.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_338 -3.0 -3.3 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_12 -3.0 -7.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2208 -3.0 -7.1 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1610 -3.0 -5.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_594 -2.9 -8.8 Glucose ABC transport system, inner membrane component 2 compare
Pf1N1B4_2893 -2.9 -8.7 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_1067 -2.9 -4.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4833 -2.9 -4.9 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1315 -2.9 -9.7 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2879 -2.8 -8.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2854 -2.8 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_1590 -2.8 -5.8 Histidine utilization repressor compare
Pf1N1B4_5822 -2.8 -4.7 Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B compare
Pf1N1B4_600 -2.8 -6.6 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_1830 -2.8 -9.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2384 -2.7 -9.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_762 -2.7 -8.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2488 -2.7 -7.7 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_593 -2.7 -5.9 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf1N1B4_598 -2.7 -5.4 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_2282 -2.6 -9.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2858 -2.6 -12.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_620 -2.6 -4.3 Glycine cleavage system H protein compare
Pf1N1B4_4487 -2.6 -3.0 FIG00955631: hypothetical protein compare
Pf1N1B4_2493 -2.5 -1.7 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_595 -2.5 -9.8 Glucose ABC transport system, inner membrane component 1 compare
Pf1N1B4_602 -2.5 -4.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_2878 -2.5 -10.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_847 -2.5 -8.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_3779 -2.4 -2.3 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_875 -2.4 -2.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1447 -2.4 -11.8 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Pf1N1B4_2912 -2.4 -3.1 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_767 -2.4 -6.2 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_2331 -2.4 -5.3 Thiazole biosynthesis protein ThiG compare
Pf1N1B4_1474 -2.3 -6.5 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf1N1B4_2850 -2.3 -8.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2823 -2.3 -2.4 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_3091 -2.3 -4.0 Membrane-associated zinc metalloprotease compare
Pf1N1B4_218 -2.3 -5.3 Periplasmic binding protein compare
Pf1N1B4_2102 -2.3 -2.2 hypothetical protein compare
Pf1N1B4_2490 -2.3 -6.9 Biotin synthesis protein BioC compare
Pf1N1B4_5827 -2.3 -3.0 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_350 -2.3 -6.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2718 -2.3 -5.0 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf1N1B4_275 -2.2 -2.2 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_5823 -2.2 -1.6 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_1114 -2.2 -5.5 ABC transporter, ATP-binding protein compare
Pf1N1B4_4087 -2.2 -4.4 MISCELLANEOUS; Unknown compare
Pf1N1B4_3998 -2.1 -3.1 putative exported protein compare
Pf1N1B4_5109 -2.1 -2.9 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_3833 -2.1 -8.4 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1212 -2.1 -4.0 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway compare
Pf1N1B4_5813 -2.1 -2.4 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_3930 -2.1 -4.4 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) compare
Pf1N1B4_1733 -2.1 -9.3 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) compare
Pf1N1B4_29 -2.1 -2.4 FIG00967200: hypothetical protein compare
Pf1N1B4_3518 -2.1 -2.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2227 -2.1 -2.9 FIG019278: hypothetical protein compare
Pf1N1B4_3484 -2.0 -5.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_1906 -2.0 -4.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_27 -2.0 -4.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_619 -2.0 -2.1 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_2491 -2.0 -3.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_3715 -2.0 -4.0 Cobalamin synthase compare
Pf1N1B4_3023 -2.0 -2.4 hypothetical protein compare
Pf1N1B4_1 -2.0 -2.2 Colicin V production protein compare
Pf1N1B4_1583 -2.0 -3.3 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf1N1B4_2085 -1.9 -2.4 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_2105 -1.9 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_322 -1.9 -4.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_3742 -1.9 -2.2 Oxidoreductase, zinc-binding compare
Pf1N1B4_621 -1.9 -6.9 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) compare
Pf1N1B4_2453 -1.9 -2.1 hypothetical protein compare
Pf1N1B4_2143 -1.9 -8.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_474 -1.9 -4.7 FIG00954461: hypothetical protein compare
Pf1N1B4_2487 -1.9 -6.1 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2112 -1.8 -10.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1897 -1.8 -4.7 Integral membrane protein TerC compare
Pf1N1B4_2232 -1.8 -5.0 Ferric iron ABC transporter, iron-binding protein compare
Pf1N1B4_51 -1.8 -2.7 hypothetical protein compare
Pf1N1B4_5393 -1.8 -2.7 hypothetical protein compare
Pf1N1B4_1750 -1.8 -1.1 Death on curing protein, Doc toxin compare
Pf1N1B4_349 -1.8 -4.5 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf1N1B4_1730 -1.8 -3.2 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_1535 -1.8 -2.9 hypothetical protein compare
Pf1N1B4_3996 -1.8 -6.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_1611 -1.8 -3.5 Nitrogen regulation protein NR(I) compare
Pf1N1B4_654 -1.8 -7.1 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Pf1N1B4_2011 -1.8 -4.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2224 -1.8 -2.7 FIG00953390: hypothetical protein compare
Pf1N1B4_5147 -1.7 -3.0 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase compare
Pf1N1B4_1460 -1.7 -8.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf1N1B4_678 -1.7 -6.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_3563 -1.7 -1.7 hypothetical protein compare
Pf1N1B4_1749 -1.7 -1.7 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_3965 -1.7 -1.8 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_3316 -1.7 -3.1 Tricarboxylate transport transcriptional regulator TctD compare
Pf1N1B4_5289 -1.7 -2.2 hypothetical protein compare
Pf1N1B4_2010 -1.7 -3.4 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1008 -1.7 -1.5 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_4257 -1.7 -1.8 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1461 -1.7 -2.3 Protein fixF compare
Pf1N1B4_3081 -1.7 -13.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4593 -1.6 -4.1 ABC transporter, periplasmic substrate-binding protein compare
Pf1N1B4_724 -1.6 -2.8 DNA-binding response regulator ColR compare
Pf1N1B4_4460 -1.6 -1.5 Cytochrome b561 compare
Pf1N1B4_5618 -1.6 -3.6 Excinuclease ABC subunit C compare
Pf1N1B4_230 -1.6 -1.7 FIG00953472: hypothetical protein compare
Pf1N1B4_257 -1.6 -5.5 sensor histidine kinase/response regulator compare
Pf1N1B4_1266 -1.6 -1.8 hypothetical protein compare
Pf1N1B4_1048 -1.6 -3.9 Sulfate transporter, CysZ-type compare
Pf1N1B4_5402 -1.6 -2.4 hypothetical protein compare
Pf1N1B4_2885 -1.6 -3.7 Paraquat-inducible protein A compare
Pf1N1B4_1586 -1.6 -6.6 Purine-cytosine permease compare
Pf1N1B4_2886 -1.6 -8.5 Paraquat-inducible protein B compare
Pf1N1B4_335 -1.6 -7.1 Glycosyltransferase compare
Pf1N1B4_10 -1.6 -2.0 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf1N1B4_3927 -1.6 -1.4 hypothetical protein compare
Pf1N1B4_1573 -1.6 -3.5 Glucans biosynthesis protein G precursor compare
Pf1N1B4_3811 -1.6 -2.6 Hydantoin racemase (EC 5.1.99.-) compare
Pf1N1B4_2253 -1.5 -4.4 Transcriptional regulator, TetR family compare
Pf1N1B4_430 -1.5 -2.1 hypothetical protein compare
Pf1N1B4_4515 -1.5 -3.5 Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) compare
Pf1N1B4_1399 -1.5 -4.0 FIG003573: hypothetical protein compare
Pf1N1B4_615 -1.5 -1.5 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_1113 -1.5 -5.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1691 -1.5 -1.3 hypothetical protein compare
Pf1N1B4_1389 -1.5 -2.1 Lysine decarboxylase family compare
Pf1N1B4_959 -1.5 -9.6 Stringent starvation protein A compare
Pf1N1B4_1463 -1.5 -6.1 hypothetical protein compare
Pf1N1B4_5575 -1.5 -1.9 hypothetical protein compare
Pf1N1B4_765 -1.5 -2.4 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_1936 -1.5 -4.7 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_3697 -1.4 -5.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_3594 -1.4 -2.4 Flagellin protein FlaA compare
Pf1N1B4_769 -1.4 -6.8 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1566 -1.4 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2234 -1.4 -2.9 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_2359 -1.4 -2.5 Chemotaxis signal transduction protein compare
Pf1N1B4_1561 -1.4 -3.0 FIG00954300: hypothetical protein compare
Pf1N1B4_4304 -1.4 -3.4 hypothetical protein compare
Pf1N1B4_3528 -1.4 -4.7 Putative membrane protein compare
Pf1N1B4_2348 -1.4 -4.3 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf1N1B4_5552 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_3073 -1.4 -4.0 probable glucosyl transferase compare
Pf1N1B4_4592 -1.4 -1.4 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_76 -1.3 -2.1 ATP binding protein compare


Specific Phenotypes

For 34 genes in this experiment