Experiment set5IT028 for Methanococcus maripaludis S2

Compare to:

Formate McCas no stress control 1

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -4.2 -11.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03315 -4.1 -3.4 ferrous iron transport protein A compare
MMP_RS06700 -4.1 -19.1 hypothetical protein compare
MMP_RS00300 -3.7 -1.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06400 -3.4 -4.1 4Fe-4S binding protein compare
MMP_RS06680 -3.1 -19.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06685 -3.0 -17.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS02280 -2.8 -2.4 DUF211 domain-containing protein compare
MMP_RS08720 -2.7 -2.7 4Fe-4S binding protein compare
MMP_RS07635 -2.6 -10.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01020 -2.6 -2.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06345 -2.6 -13.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06350 -2.6 -13.8 HesA/MoeB/ThiF family protein compare
MMP_RS06355 -2.6 -6.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS02010 -2.6 -10.7 PHP domain-containing protein compare
MMP_RS06720 -2.5 -12.7 response regulator transcription factor compare
MMP_RS03015 -2.5 -12.0 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -2.4 -9.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06715 -2.4 -18.1 cache domain-containing protein compare
MMP_RS01265 -2.4 -3.6 hypothetical protein compare
MMP_RS08820 -2.4 -7.6 hypothetical protein compare
MMP_RS06895 -2.3 -2.3 selenocysteine-specific translation elongation factor compare
MMP_RS03435 -2.2 -2.7 ketol-acid reductoisomerase compare
MMP_RS07005 -2.1 -1.3 4Fe-4S binding protein compare
MMP_RS00685 -2.1 -6.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00895 -2.1 -6.1 hypothetical protein compare
MMP_RS08635 -2.1 -3.3 UbiA family prenyltransferase compare
MMP_RS07575 -2.0 -7.2 RNA ligase partner protein compare
MMP_RS08460 -2.0 -3.9 proteasome-activating nucleotidase compare
MMP_RS01755 -2.0 -2.8 DUF2097 domain-containing protein compare
MMP_RS07445 -1.9 -6.7 helix-turn-helix domain-containing protein compare
MMP_RS06625 -1.9 -3.1 DNA primase compare
MMP_RS08715 -1.9 -3.3 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04780 -1.9 -4.9 ribonuclease P compare
MMP_RS07845 -1.8 -4.9 LL-diaminopimelate aminotransferase compare
MMP_RS01005 -1.8 -2.8 riboflavin synthase compare
MMP_RS02195 -1.8 -5.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06705 -1.8 -8.3 formate/nitrite transporter family protein compare
MMP_RS00295 -1.8 -5.1 gamma carbonic anhydrase family protein compare
MMP_RS03025 -1.8 -6.9 molybdenum cofactor guanylyltransferase compare
MMP_RS08210 -1.8 -4.1 phosphatidylglycerophosphatase A compare
MMP_RS04685 -1.7 -6.4 DUF126 domain-containing protein compare
MMP_RS01220 -1.7 -10.5 hypothetical protein compare
MMP_RS07525 -1.7 -10.9 4Fe-4S binding protein compare
MMP_RS02900 -1.7 -1.1 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS00115 -1.7 -12.3 radical SAM protein compare
MMP_RS01500 -1.7 -3.9 CBS domain-containing protein compare
MMP_RS06340 -1.7 -9.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05875 -1.7 -5.4 hydroxyethylthiazole kinase compare
MMP_RS01800 -1.7 -4.1 TIGR00303 family protein compare
MMP_RS03960 -1.7 -1.5 hypothetical protein compare
MMP_RS06295 -1.7 -6.9 methanogenesis marker 14 protein compare
MMP_RS07730 -1.6 -3.9 pyruvate synthase subunit beta compare
MMP_RS01610 -1.6 -5.0 hypothetical protein compare
MMP_RS06315 -1.6 -2.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS02800 -1.6 -6.9 nucleotidyltransferase domain-containing protein compare
MMP_RS06270 -1.6 -7.5 TIGR00300 family protein compare
MMP_RS03640 -1.6 -5.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08745 -1.6 -6.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS02355 -1.5 -5.2 30S ribosomal protein S27ae compare
MMP_RS07765 -1.5 -8.7 sodium:alanine symporter family protein compare
MMP_RS06020 -1.5 -5.2 archaeoflavoprotein AfpA compare
MMP_RS00695 -1.5 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07600 -1.5 -4.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS04585 -1.4 -8.1 AIR synthase related protein compare
MMP_RS06730 -1.4 -2.0 phosphopantothenate/pantothenate synthetase compare
MMP_RS05550 -1.4 -1.4 cation:proton antiporter compare
MMP_RS02240 -1.4 -3.6 methanogenesis marker 7 protein compare
MMP_RS00305 -1.4 -2.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS05510 -1.4 -9.9 Rrf2 family transcriptional regulator compare
MMP_RS06285 -1.3 -3.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04775 -1.3 -4.5 adenosylhomocysteinase compare
MMP_RS02165 -1.3 -6.8 tRNA-dihydrouridine synthase compare
MMP_RS08320 -1.3 -6.2 molybdopterin molybdotransferase MoeA compare
MMP_RS05555 -1.3 -2.8 DUF4040 domain-containing protein compare
MMP_RS01980 -1.3 -9.7 trimeric intracellular cation channel family protein compare
MMP_RS05540 -1.3 -3.3 hypothetical protein compare
MMP_RS06230 -1.2 -3.4 helix-turn-helix domain-containing protein compare
MMP_RS01225 -1.2 -5.0 DUF5379 domain-containing protein compare
MMP_RS07775 -1.2 -5.4 alanine dehydrogenase compare
MMP_RS06475 -1.2 -5.7 FAD-dependent oxidoreductase compare
MMP_RS03035 -1.2 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08435 -1.2 -3.7 Era-like GTP-binding protein compare
MMP_RS06940 -1.2 -2.6 polyprenyl diphosphate synthase compare
MMP_RS02135 -1.2 -5.2 DUF5612 domain-containing protein compare
MMP_RS01700 -1.2 -1.6 dihydroxy-acid dehydratase compare
MMP_RS08645 -1.1 -5.1 UPF0179 family protein compare
MMP_RS00735 -1.1 -5.3 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS05920 -1.1 -1.2 50S ribosomal protein L37e compare
MMP_RS06925 -1.1 -4.1 ribonuclease VapC4 compare
MMP_RS06120 -1.1 -2.0 UPF0147 family protein compare
MMP_RS06105 -1.1 -5.5 hydrogenase maturation peptidase HycI compare
MMP_RS00290 -1.1 -5.8 hypothetical protein compare
MMP_RS05815 -1.1 -3.4 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08330 -1.1 -6.0 NADH-quinone oxidoreductase subunit H compare
MMP_RS07380 -1.1 -1.9 transcription elongation factor Spt5 compare
MMP_RS01195 -1.1 -2.2 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS00620 -1.0 -5.4 4Fe-4S binding protein compare
MMP_RS02340 -1.0 -1.7 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01250 -1.0 -4.5 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS05765 -1.0 -4.6 M42 family metallopeptidase compare
MMP_RS01365 -1.0 -3.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS02875 -1.0 -7.2 chorismate pyruvate-lyase family protein compare
MMP_RS01385 -1.0 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS05245 -1.0 -6.3 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS01795 -1.0 -2.0 methanogenesis marker 6 protein compare
MMP_RS03600 -0.9 -2.2 triose-phosphate isomerase compare
MMP_RS06865 -0.9 -1.9 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS04605 -0.9 -4.6 cobalt ECF transporter T component CbiQ compare
MMP_RS07630 -0.9 -2.1 ATP-binding cassette domain-containing protein compare
MMP_RS07735 -0.9 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS02235 -0.9 -7.1 CBS domain-containing protein compare
MMP_RS07755 -0.9 -1.8 DUF555 domain-containing protein compare
MMP_RS02345 -0.9 -2.2 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03400 -0.9 -2.1 archease compare
MMP_RS01985 -0.9 -5.0 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS06395 -0.9 -3.9 ThiF family adenylyltransferase compare
MMP_RS05545 -0.9 -4.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS07200 -0.9 -3.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07750 -0.9 -3.1 DUF357 domain-containing protein compare
MMP_RS02885 -0.9 -7.3 molybdopterin biosynthesis protein compare
MMP_RS06485 -0.9 -1.4 zinc ribbon domain-containing protein compare
MMP_RS06175 -0.8 -5.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS04870 -0.8 -3.0 TIGR02253 family HAD-type hydrolase compare
MMP_RS08200 -0.8 -7.3 archaeosine synthase subunit alpha compare
MMP_RS07695 -0.8 -4.6 DUF3236 domain-containing protein compare
MMP_RS02190 -0.8 -2.2 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS03580 -0.8 -3.7 signal recognition particle-docking protein FtsY compare
MMP_RS07580 -0.8 -2.7 DUF356 domain-containing protein compare
MMP_RS06885 -0.8 -1.6 50S ribosome-binding GTPase compare
MMP_RS08725 -0.8 -1.5 Ni/Fe hydrogenase subunit alpha compare
MMP_RS00725 -0.8 -4.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS07700 -0.8 -5.0 DUF1188 domain-containing protein compare
MMP_RS04850 -0.8 -6.8 UPF0254 family protein compare
MMP_RS03205 -0.8 -1.4 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01720 -0.8 -1.4 replication factor C large subunit compare
MMP_RS01380 -0.8 -2.8 PHP domain-containing protein compare
MMP_RS07390 -0.8 -2.4 cell division protein FtsZ compare
MMP_RS00315 -0.8 -4.3 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS01325 -0.8 -1.6 dihydroneopterin aldolase family protein compare
MMP_RS07385 -0.8 -1.3 protein translocase SEC61 complex subunit gamma compare
MMP_RS00120 -0.8 -3.9 LysR family transcriptional regulator compare
MMP_RS05445 -0.8 -5.2 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS08650 -0.8 -2.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS04620 -0.8 -6.2 cobalt transporter CbiM compare
MMP_RS03555 -0.8 -3.7 transcriptional regulator compare
MMP_RS07535 -0.7 -4.7 4Fe-4S binding protein compare
MMP_RS03155 -0.7 -4.4 precorrin-6A reductase compare
MMP_RS04500 -0.7 -6.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS02145 -0.7 -3.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS05430 -0.7 -3.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS07425 -0.7 -3.9 GTP-binding protein compare
MMP_RS08300 -0.7 -0.8 metal-sulfur cluster assembly factor compare
MMP_RS06975 -0.7 -2.1 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS02245 -0.7 -1.9 hypothetical protein compare
MMP_RS06200 -0.7 -5.0 M24 family metallopeptidase compare
MMP_RS01335 -0.7 -2.8 prefoldin subunit beta compare
MMP_RS00050 -0.7 -3.8 AarF/UbiB family protein compare
MMP_RS07365 -0.7 -5.4 2-phosphoglycerate kinase compare
MMP_RS00730 -0.7 -4.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS00515 -0.7 -0.8 DUF655 domain-containing protein compare
MMP_RS03305 -0.6 -4.6 winged helix-turn-helix domain-containing protein compare
MMP_RS06930 -0.6 -4.3 MBL fold metallo-hydrolase compare
MMP_RS08915 -0.6 -1.7 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS08445 -0.6 -3.8 DUF2099 family protein compare
MMP_RS00915 -0.6 -3.7 DUF116 domain-containing protein compare
MMP_RS03095 -0.6 -3.8 diphthine synthase compare
MMP_RS03445 -0.6 -1.0 methanogenesis marker 17 protein compare
MMP_RS04875 -0.6 -2.7 energy-converting hydrogenase B subunit P compare
MMP_RS05845 -0.6 -1.3 tRNA-intron lyase compare
MMP_RS01665 -0.6 -2.8 DUF2111 domain-containing protein compare
MMP_RS06370 -0.6 -2.7 biotin synthase BioB compare
MMP_RS01600 -0.6 -1.1 50S ribosomal protein L15e compare
MMP_RS06215 -0.6 -1.5 30S ribosomal protein S6e compare
MMP_RS07790 -0.6 -3.9 segregation/condensation protein A compare
MMP_RS05095 -0.6 -3.8 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS00810 -0.6 -3.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS00320 -0.6 -1.6 class I SAM-dependent methyltransferase compare
MMP_RS07350 -0.6 -1.7 preprotein translocase subunit Sec61beta compare
MMP_RS03250 -0.6 -2.1 MJ1244 family protein compare
MMP_RS03490 -0.6 -1.7 DUF2115 domain-containing protein compare
MMP_RS04720 -0.6 -1.1 DedA family protein compare
MMP_RS00720 -0.5 -3.5 metal-dependent hydrolase compare
MMP_RS04615 -0.5 -2.7 PDGLE domain-containing protein compare
MMP_RS05850 -0.5 -3.1 Ldh family oxidoreductase compare
MMP_RS05425 -0.5 -3.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05060 -0.5 -4.5 AAA family ATPase compare
MMP_RS05070 -0.5 -3.7 4Fe-4S dicluster domain-containing protein compare
MMP_RS01100 -0.5 -1.6 ABC transporter ATP-binding protein compare
MMP_RS05085 -0.5 -4.1 AAA family ATPase compare
MMP_RS01030 -0.5 -1.6 MTAP family purine nucleoside phosphorylase compare
MMP_RS00060 -0.5 -1.4 3-dehydroquinate synthase II compare
MMP_RS05345 -0.5 -2.4 hypothetical protein compare
MMP_RS04710 -0.5 -0.7 hypothetical protein compare
MMP_RS07435 -0.5 -1.5 GMP synthase subunit A compare
MMP_RS08785 -0.5 -0.8 RNA-protein complex protein Nop10 compare
MMP_RS05100 -0.5 -4.3 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS07190 -0.5 -3.5 chromosome segregation protein SMC compare
MMP_RS05065 -0.5 -3.1 CooT family nickel-binding protein compare
MMP_RS08095 -0.5 -2.5 dethiobiotin synthase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in stress experiments