Experiment set5IT027 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Potassium chromate 0.000005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2574 -3.7 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_3782 -3.4 -4.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2274 -3.3 -5.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5527 -3.0 -3.5 Cold shock protein CspC compare
Pf6N2E2_3839 -2.8 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3611 -2.6 -1.8 HflC protein compare
Pf6N2E2_2219 -2.6 -3.0 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3303 -2.6 -4.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3658 -2.3 -7.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4204 -2.2 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5068 -2.2 -11.1 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5705 -2.2 -3.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2869 -2.2 -2.5 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_5242 -2.1 -2.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3252 -2.1 -6.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3842 -2.1 -4.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3661 -2.0 -5.0 hypothetical protein compare
Pf6N2E2_5069 -2.0 -4.4 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2217 -2.0 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3659 -2.0 -5.3 Protein fixF compare
Pf6N2E2_3534 -1.9 -2.7 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_4352 -1.8 -3.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_6140 -1.8 -1.3 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5337 -1.8 -3.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3461 -1.7 -2.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2127 -1.6 -4.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_178 -1.6 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3240 -1.6 -1.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_987 -1.6 -2.0 hypothetical protein compare
Pf6N2E2_302 -1.6 -5.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4454 -1.6 -5.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4159 -1.6 -2.8 Cytochrome c4 compare
Pf6N2E2_2318 -1.6 -6.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2317 -1.6 -3.1 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3841 -1.5 -4.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2218 -1.5 -4.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1128 -1.5 -2.6 Two-component response regulator compare
Pf6N2E2_3191 -1.5 -5.2 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_309 -1.4 -1.4 FIG00957702: hypothetical protein compare
Pf6N2E2_5339 -1.4 -5.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_469 -1.4 -2.2 lipoprotein, putative compare
Pf6N2E2_3875 -1.4 -1.4 FIG00953324: hypothetical protein compare
Pf6N2E2_3460 -1.4 -1.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5430 -1.4 -5.5 Transglycosylase, Slt family compare
Pf6N2E2_2311 -1.3 -5.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1315 -1.3 -1.8 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_4825 -1.3 -5.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2513 -1.3 -3.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2586 -1.3 -2.1 Hpt domain protein compare
Pf6N2E2_3908 -1.3 -4.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2180 -1.3 -2.8 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_600 -1.2 -3.1 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_6057 -1.2 -2.7 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2073 -1.2 -5.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5671 -1.2 -2.9 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4928 -1.2 -1.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_2310 -1.2 -6.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3300 -1.2 -2.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2124 -1.2 -1.9 Mg(2+) transport ATPase protein C compare
Pf6N2E2_3762 -1.2 -5.1 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_5006 -1.2 -4.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4678 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_4889 -1.1 -3.8 Putative transport protein compare
Pf6N2E2_5338 -1.1 -5.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3847 -1.1 -3.2 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2340 -1.1 -3.9 Transcriptional regulator, GntR family compare
Pf6N2E2_5584 -1.1 -2.0 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_3349 -1.1 -1.9 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4057 -1.1 -0.7 lipoprotein, putative compare
Pf6N2E2_3251 -1.1 -6.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1095 -1.1 -1.0 Opine oxidase subunit C compare
Pf6N2E2_4416 -1.1 -1.8 Tyrosine recombinase XerC compare
Pf6N2E2_3617 -1.1 -3.7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5156 -1.1 -1.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1056 -1.1 -0.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2506 -1.1 -7.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4612 -1.1 -3.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3941 -1.0 -1.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5536 -1.0 -1.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4172 -1.0 -3.9 Methionine ABC transporter ATP-binding protein compare
Pf6N2E2_3516 -1.0 -2.3 Probable transmembrane protein compare
Pf6N2E2_3665 -1.0 -0.8 serine/threonine protein kinase compare
Pf6N2E2_5727 -1.0 -3.5 FIG00955360: hypothetical protein compare
Pf6N2E2_3253 -1.0 -2.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3940 -1.0 -4.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4706 -1.0 -2.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_4276 -1.0 -3.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_479 -1.0 -3.3 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_339 -1.0 -2.1 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_3429 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_3634 -1.0 -1.8 Transporter compare
Pf6N2E2_971 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_3412 -0.9 -3.5 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_4908 -0.9 -4.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3258 -0.9 -2.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5523 -0.9 -2.3 Small-conductance mechanosensitive channel compare
Pf6N2E2_2755 -0.9 -1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3844 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_5111 -0.9 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3192 -0.9 -2.6 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4372 -0.9 -3.4 FIG00460773: hypothetical protein compare
Pf6N2E2_4517 -0.9 -2.3 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_5086 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_3505 -0.9 -1.4 Translation initiation factor SUI1-related protein compare
Pf6N2E2_70 -0.9 -2.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2126 -0.9 -3.3 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2261 -0.9 -3.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_3610 -0.9 -3.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3763 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_1694 -0.9 -1.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_4084 -0.9 -3.7 Transcriptional regulator compare
Pf6N2E2_4369 -0.9 -1.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2313 -0.9 -1.7 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4351 -0.9 -5.3 Predicted signal transduction protein compare
Pf6N2E2_4153 -0.8 -0.9 Sensory box histidine kinase compare
Pf6N2E2_48 -0.8 -2.3 FIG00955661: hypothetical protein compare
Pf6N2E2_623 -0.8 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_1749 -0.8 -1.2 Cyn operon transcriptional activator compare
Pf6N2E2_5250 -0.8 -2.3 Restriction endonuclease compare
Pf6N2E2_1959 -0.8 -2.0 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_2264 -0.8 -2.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2527 -0.8 -2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5406 -0.8 -1.6 FIG00958224: hypothetical protein compare
Pf6N2E2_5316 -0.8 -1.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_165 -0.8 -2.2 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_288 -0.8 -1.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_988 -0.8 -1.5 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_5950 -0.8 -2.1 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3204 -0.8 -2.1 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_2825 -0.8 -2.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_414 -0.8 -1.7 Chemotaxis protein CheD compare
Pf6N2E2_1563 -0.8 -2.0 Transcriptional regulator, AraC family compare
Pf6N2E2_5155 -0.8 -1.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2325 -0.8 -3.2 Recombination protein RecR compare
Pf6N2E2_1499 -0.8 -1.7 ABC transporter amino acid-binding protein compare
Pf6N2E2_478 -0.8 -1.9 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_449 -0.8 -2.4 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_959 -0.8 -2.4 putative membrane protein compare
Pf6N2E2_2320 -0.8 -1.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3179 -0.8 -1.7 FIG021952: putative membrane protein compare
Pf6N2E2_5613 -0.8 -1.7 FIG00953674: hypothetical protein compare
Pf6N2E2_5150 -0.8 -2.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3221 -0.8 -2.1 FIG00352444: hypothetical protein compare
Pf6N2E2_4615 -0.8 -1.4 type IV pili signal transduction protein PilI compare
Pf6N2E2_3260 -0.8 -2.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3568 -0.8 -1.3 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_4987 -0.8 -0.8 MaoC-like domain protein compare
Pf6N2E2_2010 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_942 -0.7 -1.3 Mll6465 protein compare
Pf6N2E2_955 -0.7 -1.4 FIG00953508: hypothetical protein compare
Pf6N2E2_4173 -0.7 -2.1 Methionine ABC transporter permease protein compare
Pf6N2E2_3783 -0.7 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2312 -0.7 -1.5 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2181 -0.7 -0.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5794 -0.7 -1.0 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1626 -0.7 -3.4 Putative ATP-binding component of a transport system compare
Pf6N2E2_624 -0.7 -2.5 hypothetical protein PA3071 compare
Pf6N2E2_3786 -0.7 -1.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_1043 -0.7 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_2208 -0.7 -2.2 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_1006 -0.7 -1.8 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_5567 -0.7 -1.7 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_4047 -0.7 -2.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_1834 -0.7 -1.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2059 -0.7 -1.8 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_96 -0.7 -2.4 FIG011065: hypothetical protein compare
Pf6N2E2_1692 -0.7 -2.3 transporter, LysE family compare
Pf6N2E2_1566 -0.7 -1.4 FIG00960770: hypothetical protein compare
Pf6N2E2_5571 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_5049 -0.7 -1.2 acetyltransferase, GNAT family compare
Pf6N2E2_4278 -0.7 -4.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2473 -0.7 -0.9 Major outer membrane lipoprotein I compare
Pf6N2E2_5483 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_3612 -0.7 -0.9 HflK protein compare
Pf6N2E2_833 -0.7 -2.4 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_919 -0.7 -0.9 FIG00954373: hypothetical protein compare
Pf6N2E2_1445 -0.7 -1.6 Glutathione S-transferase compare
Pf6N2E2_1404 -0.7 -1.2 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_3521 -0.7 -3.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_5001 -0.7 -0.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5172 -0.7 -1.4 FOG: TPR repeat compare
Pf6N2E2_552 -0.7 -1.3 Uncharacterized protein ImpF compare
Pf6N2E2_431 -0.7 -2.7 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf6N2E2_5848 -0.7 -2.0 small component of pyruvate transporter (yjcH-like) (from data) compare
Pf6N2E2_4764 -0.7 -2.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_3282 -0.7 -1.4 FIG005080: Possible exported protein compare
Pf6N2E2_826 -0.7 -1.7 ABC-type amino acid transport, signal transduction systems, periplasmic component/domain compare
Pf6N2E2_4279 -0.7 -4.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4364 -0.7 -1.7 Protein YicC compare
Pf6N2E2_1385 -0.7 -1.7 FIG00956261: hypothetical protein compare
Pf6N2E2_719 -0.7 -1.8 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_68 -0.7 -2.3 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_2702 -0.7 -2.8 FIG00962464: hypothetical protein compare
Pf6N2E2_75 -0.6 -1.9 Colicin V production protein compare
Pf6N2E2_3255 -0.6 -2.1 YrbA protein compare
Pf6N2E2_2074 -0.6 -0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_1303 -0.6 -1.7 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_855 -0.6 -2.0 Transcriptional regulator, IclR family compare
Pf6N2E2_4743 -0.6 -0.6 hypothetical protein compare
Pf6N2E2_3004 -0.6 -1.8 Prophage baseplate assembly protein V compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Potassium chromate across organisms