Experiment set5IT027 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Carnitine Hydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20620 -4.8 -8.6 isopropylmalate isomerase compare
AO353_20625 -4.8 -4.6 3-isopropylmalate dehydratase compare
AO353_13070 -4.6 -8.3 phosphoserine phosphatase compare
AO353_20695 -4.5 -8.0 O-succinylhomoserine sulfhydrylase compare
AO353_05115 -4.4 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12520 -4.2 -13.7 glutamate synthase compare
AO353_12070 -4.2 -10.8 imidazoleglycerol-phosphate dehydratase compare
AO353_08185 -4.2 -11.4 methionine biosynthesis protein MetW compare
AO353_07220 -4.1 -10.0 anthranilate synthase compare
AO353_13165 -4.1 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12085 -4.1 -10.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07230 -4.1 -19.4 anthranilate synthase compare
AO353_12150 -4.0 -7.6 histidine kinase compare
AO353_12090 -4.0 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20635 -3.9 -15.8 3-isopropylmalate dehydrogenase compare
AO353_14505 -3.9 -14.6 ketol-acid reductoisomerase compare
AO353_12515 -3.9 -24.3 glutamate synthase compare
AO353_12145 -3.9 -5.3 nitrogen regulation protein NR(I) compare
AO353_00310 -3.9 -13.6 transaldolase compare
AO353_07210 -3.8 -6.4 indole-3-glycerol-phosphate synthase compare
AO353_24130 -3.8 -3.7 hypothetical protein compare
AO353_20665 -3.8 -13.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07645 -3.8 -2.6 sarcosine oxidase subunit gamma compare
AO353_12500 -3.8 -2.6 shikimate kinase compare
AO353_20540 -3.7 -9.9 aromatic amino acid aminotransferase compare
AO353_07215 -3.6 -9.9 anthranilate phosphoribosyltransferase compare
AO353_08510 -3.6 -6.8 3-phosphoglycerate dehydrogenase compare
AO353_21625 -3.6 -4.2 Fe/S biogenesis protein NfuA compare
AO353_12075 -3.5 -10.7 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07680 -3.5 -13.3 Rieske (2Fe-2S) protein conserved
AO353_10670 -3.5 -9.6 shikimate dehydrogenase compare
AO353_14115 -3.5 -8.4 gamma-glutamyl kinase compare
AO353_08685 -3.5 -9.3 N-acetylglutamate synthase compare
AO353_05110 -3.5 -13.0 histidinol dehydrogenase compare
AO353_08475 -3.5 -11.5 phosphoserine phosphatase compare
AO353_02710 -3.5 -14.9 (p)ppGpp synthetase compare
AO353_02070 -3.5 -9.1 prephenate dehydratase compare
AO353_08180 -3.4 -15.5 homoserine O-acetyltransferase compare
AO353_14500 -3.3 -9.0 acetolactate synthase 3 regulatory subunit compare
AO353_14495 -3.3 -14.1 acetolactate synthase 3 catalytic subunit compare
AO353_04155 -3.3 -14.7 ornithine carbamoyltransferase compare
AO353_16450 -3.2 -15.5 protein-PII uridylyltransferase compare
AO353_12365 -3.2 -4.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_08345 -3.2 -11.0 dihydroxy-acid dehydratase compare
AO353_08780 -3.2 -9.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_12115 -3.1 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_07660 -3.1 -12.6 sarcosine oxidase (5,10-methylenetetrahydrofolate-forming), beta subunit (EC 1.5.3.24) (from data) conserved
AO353_07750 -3.1 -10.5 carnitine 3-dehydrogenase [EC:1.1.1.108] (from data) conserved
AO353_07155 -3.1 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07650 -3.1 -17.4 sarcosine oxidase subunit alpha conserved
AO353_09240 -3.1 -3.0 acetylglutamate kinase compare
AO353_07705 -3.1 -12.9 DgcB Dimethylglycine demethylase subunit B (EC 1.5.3.-) (from data) conserved
AO353_08165 -3.1 -4.2 pyrroline-5-carboxylate reductase compare
AO353_04105 -3.0 -11.1 argininosuccinate synthase compare
AO353_10710 -3.0 -6.4 tryptophan synthase subunit beta compare
AO353_07695 -3.0 -6.0 electron transfer flavoprotein subunit beta compare
AO353_08015 -3.0 -9.3 5,10-methylenetetrahydrofolate reductase compare
AO353_22945 -3.0 -15.8 glycogen branching protein compare
AO353_06495 -3.0 -7.4 gamma-glutamyl phosphate reductase compare
AO353_09000 -2.9 -6.8 argininosuccinate lyase compare
AO353_07675 -2.9 -12.0 ferredoxin conserved
AO353_16940 -2.9 -7.0 deoxycytidine triphosphate deaminase compare
AO353_07715 -2.9 -11.6 hydrocarbon binding protein conserved
AO353_10030 -2.9 -12.9 pyruvate carboxylase subunit A compare
AO353_12360 -2.9 -10.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_07710 -2.9 -13.6 DgcA Dimethylglycine demethylase subunit A (from data) conserved
AO353_07655 -2.8 -10.6 sarcosine oxidase subunit delta conserved
AO353_03590 -2.8 -5.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_01375 -2.8 -7.0 phosphate acyltransferase compare
AO353_07755 -2.7 -7.6 betainyl-CoA thiolase (EC 3.1.2.-) (from data) conserved
AO353_10025 -2.7 -14.9 pyruvate carboxylase subunit B compare
AO353_10035 -2.7 -9.8 LysR family transcriptional regulator compare
AO353_03580 -2.7 -5.4 ATP-dependent DNA helicase RuvB compare
AO353_07315 -2.7 -3.1 rRNA methyltransferase compare
AO353_07520 -2.6 -13.4 8-amino-7-oxononanoate synthase compare
AO353_07525 -2.6 -13.3 biotin synthase compare
AO353_08045 -2.6 -15.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07700 -2.5 -3.3 electron transfer flavoprotein subunit alpha compare
AO353_15925 -2.5 -9.3 2-isopropylmalate synthase compare
AO353_07510 -2.5 -10.2 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_00825 -2.5 -5.6 porin compare
AO353_02975 -2.4 -4.0 aspartate kinase compare
AO353_20175 -2.4 -4.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_07515 -2.4 -3.1 transporter compare
AO353_08885 -2.4 -16.0 polyphosphate kinase compare
AO353_07720 -2.4 -7.9 peptidase M19 conserved
AO353_02720 -2.4 -6.9 cysteine synthase compare
AO353_07665 -2.3 -8.6 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) conserved
AO353_21630 -2.3 -3.6 precorrin-4 C11-methyltransferase compare
AO353_14420 -2.3 -6.0 molecular chaperone DnaK compare
AO353_07355 -2.2 -8.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_08465 -2.2 -13.8 phosphoenolpyruvate-protein phosphotransferase compare
AO353_03360 -2.2 -8.9 glucose-6-phosphate dehydrogenase compare
AO353_04355 -2.2 -3.2 homoserine dehydrogenase compare
AO353_07790 -2.1 -6.2 ABC transporter for Carnitine, ATPase component (from data) conserved
AO353_02250 -2.1 -3.4 chorismate synthase compare
AO353_07505 -2.1 -8.6 dethiobiotin synthetase compare
AO353_06040 -2.1 -4.8 exodeoxyribonuclease V subunit alpha compare
AO353_11165 -2.0 -9.3 hypothetical protein compare
AO353_07745 -1.9 -4.5 NADPH:quinone reductase compare
AO353_14400 -1.9 -5.4 Fis family transcriptional regulator compare
AO353_03615 -1.9 -4.1 cold-shock protein compare
AO353_14595 -1.9 -8.4 carbonate dehydratase compare
AO353_00810 -1.9 -3.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_27650 -1.8 -5.7 cell division protein FtsK compare
AO353_07735 -1.8 -5.6 AraC family transcriptional regulator conserved
AO353_06045 -1.8 -7.7 exodeoxyribonuclease V subunit beta compare
AO353_06050 -1.7 -7.5 exodeoxyribonuclease V subunit gamma compare
AO353_03020 -1.7 -6.2 arginine N-succinyltransferase compare
AO353_07740 -1.7 -4.8 ABC transporter for Carnitine, substrate-binding component (from data) compare
AO353_00105 -1.7 -2.9 hypothetical protein compare
AO353_02600 -1.7 -3.2 alpha-ribazole phosphatase compare
AO353_02075 -1.7 -8.8 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_19360 -1.7 -3.0 peroxiredoxin compare
AO353_10430 -1.7 -3.6 chromosome partitioning protein ParB compare
AO353_14370 -1.6 -6.8 glucose-6-phosphate isomerase compare
AO353_09285 -1.6 -8.3 reactive intermediate/imine deaminase compare
AO353_22800 -1.6 -3.8 sulfite reductase compare
AO353_13640 -1.6 -4.0 histidine kinase compare
AO353_16805 -1.6 -6.2 recombinase RecA compare
AO353_09320 -1.5 -8.3 ATP-dependent DNA helicase RecG compare
AO353_07785 -1.5 -6.4 ABC transporter for Carnitine, permease component (from data) conserved
AO353_04220 -1.5 -4.0 chemotaxis protein CheY compare
AO353_07075 -1.5 -4.1 elongation factor Tu compare
AO353_04240 -1.5 -2.2 chemotaxis protein CheW compare
AO353_10705 -1.4 -3.2 tryptophan synthase subunit alpha compare
AO353_05105 -1.4 -8.7 histidinol-phosphate aminotransferase compare
AO353_19145 -1.4 -3.0 protease HtpX compare
AO353_03585 -1.4 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_03245 -1.4 -7.3 permease DsdX compare
AO353_14220 -1.3 -1.5 ribosomal large subunit pseudouridine synthase D compare
AO353_12345 -1.3 -2.3 twin-arginine protein translocation system subunit TatC compare
AO353_00490 -1.3 -3.0 PasA protein compare
AO353_03420 -1.3 -4.1 phosphogluconate dehydratase compare
AO353_02000 -1.3 -3.7 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_08350 -1.2 -5.8 hypothetical protein compare
AO353_08470 -1.2 -2.3 RNA pyrophosphohydrolase compare
AO353_08265 -1.2 -4.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_01595 -1.2 -2.6 Flp pilus assembly protein CpaB compare
AO353_18715 -1.2 -1.1 histidine kinase compare
AO353_12990 -1.2 -3.4 multidrug DMT transporter compare
AO353_04365 -1.2 -3.6 recombinase XerD compare
AO353_12105 -1.1 -4.9 peptidase S41 compare
AO353_05690 -1.1 -3.2 SsrA-binding protein compare
AO353_13605 -1.1 -6.8 oxidoreductase compare
AO353_24440 -1.1 -2.1 reactive intermediate/imine deaminase compare
AO353_18705 -1.1 -3.2 anti-anti-sigma factor compare
AO353_01975 -1.1 -5.7 glycosyl transferase compare
AO353_20170 -1.1 -4.3 trigger factor compare
AO353_03630 -1.1 -7.7 porin compare
AO353_09050 -1.1 -2.6 recombinase XerC compare
AO353_10055 -1.0 -6.9 DNA helicase II compare
AO353_13140 -1.0 -4.0 tRNA dimethylallyltransferase compare
AO353_03795 -1.0 -3.5 fumarate hydratase compare
AO353_02895 -1.0 -6.5 MFS transporter compare
AO353_08115 -1.0 -4.2 energy transducer TonB compare
AO353_06100 -1.0 -1.5 thymidylate synthase compare
AO353_05420 -1.0 -1.7 peptide chain release factor 3 compare
AO353_02635 -1.0 -5.6 cobyrinic acid a,c-diamide synthase compare
AO353_21660 -1.0 -6.9 cobalamin biosynthesis protein CobN compare
AO353_10925 -1.0 -4.6 hypothetical protein compare
AO353_07780 -1.0 -5.8 Carnitine ABC transporter, substrate-binding component CaiX (from data) compare
AO353_06490 -1.0 -2.6 nicotinate-nucleotide adenylyltransferase compare
AO353_02625 -1.0 -5.9 cobalamin biosynthesis protein CobD compare
AO353_20510 -1.0 -2.1 amidase compare
AO353_21615 -1.0 -6.7 methionine synthase compare
AO353_13245 -1.0 -5.2 hypothetical protein compare
AO353_09395 -1.0 -3.4 type VI secretion protein compare
AO353_13620 -1.0 -5.7 precorrin-3B C17-methyltransferase compare
AO353_07770 -0.9 -2.9 AraC family transcriptional regulator compare
AO353_12350 -0.9 -2.1 preprotein translocase compare
AO353_22645 -0.9 -1.5 hypothetical protein compare
AO353_03970 -0.9 -6.5 diguanylate cyclase compare
AO353_12590 -0.9 -2.5 hypothetical protein compare
AO353_03715 -0.9 -1.8 H-NS histone compare
AO353_02605 -0.9 -4.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_01080 -0.9 -5.4 hypothetical protein compare
AO353_07555 -0.9 -1.9 glycine cleavage system protein R compare
AO353_02610 -0.9 -4.0 adenosylcobinamide kinase compare
AO353_12710 -0.9 -1.3 thioredoxin compare
AO353_13615 -0.9 -6.4 precorrin-2 C20-methyltransferase compare
AO353_22580 -0.9 -2.7 3-demethylubiquinone-9 3-methyltransferase compare
AO353_19090 -0.8 -1.8 MarR family transcriptional regulator compare
AO353_02615 -0.8 -4.6 cobyric acid synthase compare
AO353_15555 -0.8 -3.1 fumarylacetoacetase compare
AO353_27930 -0.8 -3.4 LysR family transcriptional regulator compare
AO353_03275 -0.8 -1.8 LysR family transcriptional regulator compare
AO353_20370 -0.8 -1.7 MerR family transcriptional regulator compare
AO353_03605 -0.8 -1.2 FmdB family transcriptional regulator compare
AO353_09890 -0.8 -3.1 phosphate ABC transporter ATP-binding protein compare
AO353_10455 -0.8 -1.3 tRNA modification GTPase MnmE compare
AO353_08485 -0.8 -5.8 threonine dehydratase compare
AO353_14795 -0.8 -2.7 molybdopterin-synthase adenylyltransferase compare
AO353_16580 -0.8 -5.5 S-(hydroxymethyl)glutathione dehydrogenase compare
AO353_11850 -0.8 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_09155 -0.8 -4.5 amino acid dehydrogenase compare
AO353_00495 -0.8 -1.6 DNA topoisomerase I compare
AO353_12510 -0.8 -5.3 cell division protein compare
AO353_01780 -0.8 -5.4 heat-shock protein Hsp90 compare
AO353_01410 -0.8 -2.0 ribonuclease E compare


Specific Phenotypes

For 17 genes in this experiment

For nitrogen source Carnitine Hydrochloride in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Carnitine Hydrochloride across organisms