Experiment set5IT026 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium phosphite dibasic pentahydrate 0.25 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3617 -5.3 -3.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2473 -4.6 -2.0 Major outer membrane lipoprotein I compare
Pf6N2E2_5006 -4.5 -9.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2507 -4.5 -5.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4187 -4.4 -3.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5069 -4.3 -6.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_1633 -4.0 -4.7 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_5068 -3.9 -13.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_4362 -3.7 -4.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_145 -3.6 -7.9 putative exported protein compare
Pf6N2E2_2755 -3.6 -2.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_445 -3.5 -7.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_144 -3.5 -15.2 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3460 -3.4 -2.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_1632 -3.4 -6.3 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_3661 -3.4 -3.3 hypothetical protein compare
Pf6N2E2_4803 -3.4 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_6140 -3.3 -1.4 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2506 -3.3 -14.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5150 -3.2 -6.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3658 -3.2 -7.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2218 -3.1 -4.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4585 -3.1 -13.3 Cell division protein FtsX compare
Pf6N2E2_3834 -3.1 -6.0 Lipoprotein NlpD compare
Pf6N2E2_5339 -3.1 -7.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_156 -3.0 -2.4 Carbon storage regulator compare
Pf6N2E2_2278 -3.0 -14.4 Transcription-repair coupling factor compare
Pf6N2E2_2425 -3.0 -4.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2317 -3.0 -3.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3941 -3.0 -3.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5640 -2.9 -2.4 FIG00955597: hypothetical protein compare
Pf6N2E2_1634 -2.9 -4.8 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_3839 -2.9 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5103 -2.9 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3791 -2.9 -8.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_4369 -2.8 -1.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2754 -2.8 -3.0 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_2318 -2.8 -8.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2320 -2.7 -3.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3842 -2.7 -4.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3610 -2.7 -4.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3282 -2.6 -2.5 FIG005080: Possible exported protein compare
Pf6N2E2_2753 -2.6 -2.5 HtrA protease/chaperone protein compare
Pf6N2E2_2311 -2.6 -7.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3611 -2.5 -1.7 HflC protein compare
Pf6N2E2_4071 -2.5 -5.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4153 -2.4 -1.6 Sensory box histidine kinase compare
Pf6N2E2_5242 -2.4 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5956 -2.4 -6.7 FIG004453: protein YceG like compare
Pf6N2E2_3663 -2.3 -8.2 Glycosyl transferase compare
Pf6N2E2_5156 -2.3 -1.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4372 -2.3 -5.5 FIG00460773: hypothetical protein compare
Pf6N2E2_2510 -2.3 -4.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2274 -2.3 -5.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4638 -2.3 -3.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1636 -2.3 -9.0 Ferrichrome-iron receptor compare
Pf6N2E2_2010 -2.2 -2.1 hypothetical protein compare
Pf6N2E2_3659 -2.2 -4.4 Protein fixF compare
Pf6N2E2_3062 -2.2 -3.3 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3770 -2.1 -2.8 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_2574 -2.1 -2.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_2586 -2.1 -2.2 Hpt domain protein compare
Pf6N2E2_6164 -2.1 -1.5 tRNA-Val-TAC compare
Pf6N2E2_5647 -2.0 -4.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5671 -2.0 -3.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2488 -2.0 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3792 -2.0 -4.8 Glucans biosynthesis protein G precursor compare
Pf6N2E2_4584 -1.9 -3.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3303 -1.9 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3253 -1.9 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_1056 -1.9 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1287 -1.9 -4.1 Mobile element protein compare
Pf6N2E2_2022 -1.9 -5.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_420 -1.8 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5312 -1.8 -1.9 FIG00964214: hypothetical protein compare
Pf6N2E2_3257 -1.8 -3.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3251 -1.8 -7.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5771 -1.8 -6.6 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5219 -1.8 -7.9 FIG140336: TPR domain protein compare
Pf6N2E2_3301 -1.8 -8.9 ABC transporter, ATP-binding protein compare
Pf6N2E2_3783 -1.8 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2310 -1.8 -8.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3833 -1.8 -4.6 hypothetical protein compare
Pf6N2E2_4614 -1.8 -3.1 twitching motility protein PilH compare
Pf6N2E2_4159 -1.7 -3.8 Cytochrome c4 compare
Pf6N2E2_1032 -1.7 -1.4 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3328 -1.7 -1.4 transcriptional regulator compare
Pf6N2E2_4096 -1.7 -6.1 Sulfate transporter family protein in cluster with carbonic anhydrase compare
Pf6N2E2_3782 -1.7 -2.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5338 -1.7 -6.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3179 -1.7 -1.9 FIG021952: putative membrane protein compare
Pf6N2E2_3665 -1.7 -1.0 serine/threonine protein kinase compare
Pf6N2E2_1635 -1.7 -3.8 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_2508 -1.7 -3.0 hypothetical protein compare
Pf6N2E2_1625 -1.6 -3.3 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2261 -1.6 -5.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_3252 -1.6 -4.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3270 -1.6 -3.2 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_2013 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_5573 -1.6 -4.0 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_3534 -1.6 -2.8 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3612 -1.6 -2.2 HflK protein compare
Pf6N2E2_1932 -1.6 -4.4 Transcriptional regulator, IclR family compare
Pf6N2E2_4360 -1.6 -7.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_827 -1.6 -2.8 probable dioxygenase compare
Pf6N2E2_3461 -1.6 -2.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2340 -1.6 -4.5 Transcriptional regulator, GntR family compare
Pf6N2E2_5816 -1.6 -1.7 Smr domain protein compare
Pf6N2E2_2527 -1.5 -4.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2513 -1.5 -3.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2121 -1.5 -1.9 hypothetical protein compare
Pf6N2E2_2822 -1.5 -5.8 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3260 -1.5 -4.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_40 -1.5 -3.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5536 -1.4 -1.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3521 -1.4 -5.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_5252 -1.4 -2.0 FIG00956396: hypothetical protein compare
Pf6N2E2_3702 -1.4 -1.6 FIG00953907: hypothetical protein compare
Pf6N2E2_2309 -1.4 -2.8 hypothetical protein compare
Pf6N2E2_5014 -1.4 -1.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4620 -1.4 -2.4 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf6N2E2_5337 -1.4 -2.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4708 -1.4 -3.0 hypothetical protein compare
Pf6N2E2_5316 -1.4 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3505 -1.4 -1.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_70 -1.4 -1.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5520 -1.4 -4.5 Sensory box histidine kinase compare
Pf6N2E2_2313 -1.4 -2.5 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5406 -1.4 -2.4 FIG00958224: hypothetical protein compare
Pf6N2E2_3039 -1.4 -3.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3664 -1.3 -4.0 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2825 -1.3 -2.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3198 -1.3 -1.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5088 -1.3 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5714 -1.3 -1.8 Flavoprotein WrbA compare
Pf6N2E2_3876 -1.3 -3.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5527 -1.3 -1.9 Cold shock protein CspC compare
Pf6N2E2_2223 -1.3 -1.8 hypothetical protein compare
Pf6N2E2_5133 -1.3 -2.3 FIG00953980: hypothetical protein compare
Pf6N2E2_5237 -1.3 -1.9 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2201 -1.3 -2.0 Transmembrane regulator protein PrtR compare
Pf6N2E2_2217 -1.3 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2700 -1.2 -4.8 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_1043 -1.2 -3.5 Transcriptional regulator, IclR family compare
Pf6N2E2_3763 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_4120 -1.2 -6.8 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2264 -1.2 -3.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3338 -1.2 -1.8 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_5049 -1.2 -1.5 acetyltransferase, GNAT family compare
Pf6N2E2_4044 -1.2 -3.4 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_2181 -1.2 -1.4 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_928 -1.2 -1.4 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_5444 -1.2 -2.4 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_3656 -1.2 -3.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_4440 -1.2 -4.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_6065 -1.2 -1.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2634 -1.2 -6.4 Potassium uptake protein TrkH compare
Pf6N2E2_4205 -1.2 -2.5 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1099 -1.2 -1.6 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_2325 -1.2 -3.7 Recombination protein RecR compare
Pf6N2E2_1283 -1.2 -2.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2402 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_2827 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_3292 -1.1 -2.5 K+-dependent Na+/Ca+ exchanger related-protein compare
Pf6N2E2_3841 -1.1 -2.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2752 -1.1 -4.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_75 -1.1 -2.1 Colicin V production protein compare
Pf6N2E2_1303 -1.1 -1.9 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_3003 -1.1 -2.2 Bacteriophage protein GP46 compare
Pf6N2E2_4352 -1.1 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2870 -1.1 -2.7 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_2219 -1.1 -1.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2869 -1.1 -1.3 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3655 -1.1 -6.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2018 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_5086 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_4273 -1.1 -4.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4279 -1.1 -5.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2984 -1.1 -1.9 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_3349 -1.1 -1.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3607 -1.1 -4.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4095 -1.1 -3.8 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_1128 -1.1 -1.0 Two-component response regulator compare
Pf6N2E2_3872 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_39 -1.1 -1.9 FIG00857858: hypothetical protein compare
Pf6N2E2_5785 -1.1 -1.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5720 -1.1 -6.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3095 -1.1 -0.8 hypothetical protein compare
Pf6N2E2_4594 -1.1 -2.2 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_5567 -1.1 -1.3 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_765 -1.1 -3.5 Fap system putative outer membrane protein compare
Pf6N2E2_1171 -1.1 -2.9 LysR family transcriptional regulator PA2877 compare
Pf6N2E2_292 -1.0 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_5430 -1.0 -4.5 Transglycosylase, Slt family compare
Pf6N2E2_719 -1.0 -2.2 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_2103 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_5902 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_2420 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_4451 -1.0 -3.3 FIG139438: lipoprotein B compare
Pf6N2E2_4046 -1.0 -7.5 FIG00953482: hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium phosphite dibasic pentahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium phosphite dibasic pentahydrate across organisms