Experiment set5IT026 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium phosphite dibasic pentahydrate 0.25 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_2465 +2.2 10.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_924 +1.1 3.0 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_2438 +1.1 1.8 hypothetical protein compare
Pf6N2E2_4459 +1.1 2.4 Transcriptional regulator, GntR family compare
Pf6N2E2_405 +1.1 1.2 hypothetical protein compare
Pf6N2E2_2543 +1.1 6.9 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Pf6N2E2_6045 +1.1 1.6 hypothetical protein compare
Pf6N2E2_5078 +1.0 2.6 Carbon starvation protein A compare
Pf6N2E2_4057 +1.0 1.0 lipoprotein, putative compare
Pf6N2E2_1156 +1.0 2.2 hypothetical protein compare
Pf6N2E2_4969 +1.0 1.6 hypothetical protein compare
Pf6N2E2_1312 +1.0 2.5 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_3206 +1.0 1.3 hypothetical protein compare
Pf6N2E2_6082 +1.0 4.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4075 +1.0 4.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3744 +1.0 1.8 General secretion pathway protein F compare
Pf6N2E2_2436 +1.0 2.9 DNA-binding response regulator, LuxR family compare
Pf6N2E2_4305 +1.0 1.2 FIG00959590: hypothetical protein compare
Pf6N2E2_3373 +1.0 2.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4418 +0.9 0.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_309 +0.9 1.4 FIG00957702: hypothetical protein compare
Pf6N2E2_4640 +0.9 1.6 hypothetical protein compare
Pf6N2E2_1972 +0.9 1.7 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_2936 +0.9 4.7 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_4146 +0.9 1.9 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_2542 +0.9 6.1 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Pf6N2E2_1248 +0.9 0.9 MutT/nudix family protein compare
Pf6N2E2_1989 +0.8 1.4 hypothetical protein compare
Pf6N2E2_241 +0.8 1.3 hypothetical protein compare
Pf6N2E2_1455 +0.8 3.3 Xylose ABC transporter, periplasmic xylose-binding protein XylF compare
Pf6N2E2_4074 +0.8 6.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_6070 +0.8 1.4 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_3637 +0.8 4.9 yqiA-like hydrolase, affects the cell envelope (from data) compare
Pf6N2E2_4160 +0.8 1.1 Cytochrome c5 compare
Pf6N2E2_5236 +0.8 2.3 hypothetical protein compare
Pf6N2E2_1083 +0.8 1.7 hypothetical protein compare
Pf6N2E2_1141 +0.8 1.5 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_5862 +0.8 1.6 Lipoprotein, putative compare
Pf6N2E2_1774 +0.8 1.5 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_647 +0.8 1.9 General secretion pathway protein G compare
Pf6N2E2_1602 +0.8 2.5 hypothetical protein compare
Pf6N2E2_971 +0.8 2.0 hypothetical protein compare
Pf6N2E2_5510 +0.8 1.6 FIG00955324: hypothetical protein compare
Pf6N2E2_3844 +0.8 1.1 hypothetical protein compare
Pf6N2E2_3009 +0.7 1.5 Phage tail tube protein compare
Pf6N2E2_4710 +0.7 1.4 hypothetical protein compare
Pf6N2E2_579 +0.7 0.7 FIG00962753: hypothetical protein compare
Pf6N2E2_4307 +0.7 1.3 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_1759 +0.7 2.0 uncharacterized domain 1 compare
Pf6N2E2_3283 +0.7 3.7 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_2934 +0.7 1.3 lipoprotein, putative compare
Pf6N2E2_6099 +0.7 1.0 tRNA-Glu-TTC compare
Pf6N2E2_89 +0.7 1.1 hypothetical protein compare
Pf6N2E2_1758 +0.7 1.1 Transcriptional regulator, MarR family compare
Pf6N2E2_1506 +0.7 2.2 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_2125 +0.7 2.5 hypothetical protein compare
Pf6N2E2_1584 +0.7 1.7 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_5704 +0.7 3.3 Transcriptional regulatory protein PhoP compare
Pf6N2E2_434 +0.7 1.6 hypothetical protein compare
Pf6N2E2_831 +0.7 1.9 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_413 +0.7 1.2 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_1670 +0.7 1.8 conserved membrane protein compare
Pf6N2E2_3298 +0.7 2.7 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) compare
Pf6N2E2_3088 +0.7 1.8 hypothetical protein compare
Pf6N2E2_5622 +0.7 1.3 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2842 +0.7 1.6 hypothetical protein compare
Pf6N2E2_4508 +0.7 2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_1735 +0.7 1.0 PhnB protein compare
Pf6N2E2_2500 +0.7 2.7 Putative membrane protein compare
Pf6N2E2_5241 +0.7 1.7 Aminopeptidase N compare
Pf6N2E2_5990 +0.7 1.5 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_625 +0.7 2.0 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2938 +0.7 1.9 Outer membrane lipoprotein compare
Pf6N2E2_127 +0.6 0.8 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_2284 +0.6 1.3 Cell division inhibitor-related protein compare
Pf6N2E2_2286 +0.6 1.3 FIG00953287: hypothetical protein compare
Pf6N2E2_906 +0.6 1.5 ISPpu14, transposase Orf2 compare
Pf6N2E2_2279 +0.6 2.1 FIG00954981: hypothetical protein compare
Pf6N2E2_4391 +0.6 2.8 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_1462 +0.6 1.7 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_4466 +0.6 4.0 Glycerol-3-phosphate transporter compare
Pf6N2E2_1876 +0.6 1.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_1354 +0.6 2.3 FIG026291: Hypothetical periplasmic protein compare
Pf6N2E2_204 +0.6 1.0 hypothetical protein compare
Pf6N2E2_2012 +0.6 1.1 hypothetical protein compare
Pf6N2E2_2601 +0.6 2.1 Flagellin protein FlaG compare
Pf6N2E2_342 +0.6 0.9 DNA-binding response regulator compare
Pf6N2E2_5758 +0.6 0.7 FIG00957314: hypothetical protein compare
Pf6N2E2_5972 +0.6 1.2 hypothetical protein compare
Pf6N2E2_5052 +0.6 1.4 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_1412 +0.6 1.6 hypothetical protein compare
Pf6N2E2_314 +0.6 2.1 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_5810 +0.6 2.1 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_4982 +0.6 2.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_2102 +0.6 2.3 Glutaminase (EC 3.5.1.2) (from data) compare
Pf6N2E2_1656 +0.6 0.8 hypothetical protein compare
Pf6N2E2_1085 +0.6 1.7 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_1618 +0.6 2.2 ABC-type amino acid transport, signal transduction systems, periplasmic component/domain compare
Pf6N2E2_1896 +0.6 1.5 hypothetical protein compare
Pf6N2E2_4332 +0.6 2.7 hypothetical protein compare
Pf6N2E2_295 +0.6 1.2 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_2896 +0.6 2.3 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_5024 +0.6 1.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_1434 +0.6 0.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2674 +0.5 0.8 FIG00953856: hypothetical protein compare
Pf6N2E2_962 +0.5 1.0 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_4181 +0.5 0.7 Organic hydroperoxide resistance protein compare
Pf6N2E2_5906 +0.5 1.1 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_2265 +0.5 1.0 Copper tolerance protein compare
Pf6N2E2_2152 +0.5 1.1 hypothetical protein compare
Pf6N2E2_2256 +0.5 2.0 hypothetical protein compare
Pf6N2E2_1440 +0.5 1.5 Putative tRNA-m1A22 methylase compare
Pf6N2E2_1697 +0.5 2.0 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf6N2E2_2580 +0.5 1.8 Flagellar biosynthesis protein FliP compare
Pf6N2E2_3638 +0.5 1.2 hypothetical protein compare
Pf6N2E2_3248 +0.5 1.4 Probable transmembrane protein compare
Pf6N2E2_2633 +0.5 1.7 Nitroreductase family protein compare
Pf6N2E2_3120 +0.5 1.8 Chemotaxis signal transduction protein compare
Pf6N2E2_2681 +0.5 1.4 3-phosphoglycerate kinase compare
Pf6N2E2_2985 +0.5 1.3 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_62 +0.5 1.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5340 +0.5 1.2 Stringent starvation protein A compare
Pf6N2E2_2061 +0.5 1.7 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_5843 +0.5 0.6 hypothetical protein compare
Pf6N2E2_3516 +0.5 1.2 Probable transmembrane protein compare
Pf6N2E2_336 +0.5 2.0 hypothetical protein compare
Pf6N2E2_2536 +0.5 0.6 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_186 +0.5 2.3 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_2413 +0.5 0.5 FIG074102: hypothetical protein compare
Pf6N2E2_1720 +0.5 1.3 hypothetical protein compare
Pf6N2E2_3027 +0.5 0.8 Baseplate assembly protein V compare
Pf6N2E2_2686 +0.5 2.2 Aquaporin Z compare
Pf6N2E2_5097 +0.5 1.5 FIG00953595: hypothetical protein compare
Pf6N2E2_444 +0.5 1.7 hypothetical protein compare
Pf6N2E2_228 +0.5 1.7 Transcriptional regulator, IclR family compare
Pf6N2E2_6085 +0.5 0.8 Aha1 domain superfamily compare
Pf6N2E2_4504 +0.5 2.2 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf6N2E2_3140 +0.5 0.8 FIG00953680: hypothetical protein compare
Pf6N2E2_536 +0.5 3.1 Na(+) H(+) antiporter subunit D compare
Pf6N2E2_310 +0.5 1.9 hypothetical protein compare
Pf6N2E2_780 +0.5 3.0 FIG00955564: hypothetical protein compare
Pf6N2E2_5272 +0.5 1.7 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_4532 +0.5 1.7 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_3595 +0.5 1.2 Large protein containing transglutaminase-like domain compare
Pf6N2E2_5694 +0.5 2.6 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_5574 +0.5 3.5 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_2395 +0.5 1.7 Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf6N2E2_714 +0.5 1.7 NnrS protein involved in response to NO compare
Pf6N2E2_5844 +0.5 2.1 Membrane protein, putative compare
Pf6N2E2_3074 +0.5 1.0 FIG00960973: hypothetical protein compare
Pf6N2E2_5257 +0.5 2.7 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_1014 +0.5 0.6 Nitrate/nitrite transporter compare
Pf6N2E2_4916 +0.5 1.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1148 +0.5 0.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_1740 +0.5 1.0 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_3969 +0.5 0.9 Membrane-fusion protein compare
Pf6N2E2_1673 +0.5 0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_4072 +0.5 1.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1028 +0.5 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_2074 +0.5 0.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5374 +0.5 1.9 Membrane fusion component of tripartite multidrug resistance system compare
Pf6N2E2_857 +0.5 2.0 hypothetical protein compare
Pf6N2E2_5943 +0.5 1.1 hypothetical protein compare
Pf6N2E2_1336 +0.5 1.2 AraC family transcription regulator compare
Pf6N2E2_2927 +0.5 0.9 Putative signal peptide protein compare
Pf6N2E2_2 +0.5 1.0 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_837 +0.5 2.4 HlyD family secretion protein compare
Pf6N2E2_3825 +0.5 1.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2373 +0.5 1.1 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_1329 +0.5 1.6 Phenylacetaldehyde dehydrogenase (EC 1.2.1.39) compare
Pf6N2E2_4272 +0.5 1.4 putative membrane protein compare
Pf6N2E2_2300 +0.5 1.5 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_1319 +0.5 0.9 FIG074102: hypothetical protein compare
Pf6N2E2_485 +0.5 2.2 TRAP-type C4-dicarboxylate transport system, large permease component compare
Pf6N2E2_4121 +0.5 1.5 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_3735 +0.4 1.8 LysR family transcriptional regulator YnfL compare
Pf6N2E2_403 +0.4 1.3 Cyanate hydratase (EC 4.2.1.104) compare
Pf6N2E2_200 +0.4 1.3 Possible glycosyltransferase compare
Pf6N2E2_1509 +0.4 2.2 FIG00450070: hypothetical protein compare
Pf6N2E2_1196 +0.4 2.0 hypothetical protein compare
Pf6N2E2_180 +0.4 0.8 Transcriptional regulator, MerR family compare
Pf6N2E2_1355 +0.4 1.7 Ribose operon repressor compare
Pf6N2E2_5776 +0.4 1.5 hypothetical protein compare
Pf6N2E2_1994 +0.4 1.0 putative lipoprotein compare
Pf6N2E2_3141 +0.4 2.6 virulence sensor protein compare
Pf6N2E2_1711 +0.4 1.5 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) compare
Pf6N2E2_1378 +0.4 2.3 hypothetical protein compare
Pf6N2E2_2247 +0.4 0.8 Transcriptional regulator, AraC family compare
Pf6N2E2_3561 +0.4 0.8 Phosphate starvation-inducible protein psiF precursor compare
Pf6N2E2_961 +0.4 0.9 FIG00954712: hypothetical protein compare
Pf6N2E2_3362 +0.4 0.8 hypothetical protein compare
Pf6N2E2_1033 +0.4 1.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_4470 +0.4 2.6 Flagellar biosynthesis protein FliL compare
Pf6N2E2_5864 +0.4 1.5 FIG00953296: hypothetical protein compare
Pf6N2E2_865 +0.4 0.8 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_563 +0.4 1.8 Serine transporter compare
Pf6N2E2_4478 +0.4 2.0 FIG019278: hypothetical protein compare
Pf6N2E2_4043 +0.4 1.4 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_5783 +0.4 1.6 hypothetical protein compare
Pf6N2E2_1158 +0.4 2.0 Cyn operon transcriptional activator compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium phosphite dibasic pentahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium phosphite dibasic pentahydrate across organisms