Experiment set5IT026 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Citrulline nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_25635 -5.8 -7.9 citrulline utilization hydrolase (from data) conserved
AO353_02995 -5.0 -8.9 succinylglutamate desuccinylase compare
AO353_01375 -5.0 -9.5 phosphate acyltransferase compare
AO353_13070 -4.9 -8.8 phosphoserine phosphatase compare
AO353_20695 -4.7 -9.0 O-succinylhomoserine sulfhydrylase compare
AO353_10670 -4.7 -7.8 shikimate dehydrogenase compare
AO353_02070 -4.6 -7.1 prephenate dehydratase compare
AO353_05115 -4.6 -11.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20635 -4.6 -15.2 3-isopropylmalate dehydrogenase compare
AO353_20625 -4.5 -5.3 3-isopropylmalate dehydratase compare
AO353_12070 -4.5 -9.5 imidazoleglycerol-phosphate dehydratase compare
AO353_20540 -4.4 -8.9 aromatic amino acid aminotransferase compare
AO353_02075 -4.4 -13.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_13165 -4.3 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07230 -4.3 -19.0 anthranilate synthase compare
AO353_12085 -4.3 -9.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07210 -4.2 -6.4 indole-3-glycerol-phosphate synthase compare
AO353_05520 -4.2 -8.0 nicotinate-nucleotide pyrophosphorylase compare
AO353_08345 -4.2 -10.1 dihydroxy-acid dehydratase compare
AO353_20665 -4.2 -13.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08185 -4.1 -12.1 methionine biosynthesis protein MetW compare
AO353_14505 -4.1 -14.9 ketol-acid reductoisomerase compare
AO353_00310 -4.0 -13.3 transaldolase compare
AO353_03025 -3.9 -7.5 acetylornithine aminotransferase compare
AO353_07525 -3.8 -16.9 biotin synthase compare
AO353_20620 -3.8 -7.2 isopropylmalate isomerase compare
AO353_12075 -3.7 -10.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08180 -3.7 -15.7 homoserine O-acetyltransferase compare
AO353_07220 -3.6 -10.1 anthranilate synthase compare
AO353_08475 -3.6 -11.7 phosphoserine phosphatase compare
AO353_12360 -3.6 -10.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_22800 -3.6 -4.8 sulfite reductase compare
AO353_14500 -3.6 -8.9 acetolactate synthase 3 regulatory subunit compare
AO353_07510 -3.6 -12.7 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07515 -3.5 -3.3 transporter compare
AO353_03015 -3.5 -6.6 arginine N-succinyltransferase compare
AO353_07215 -3.5 -10.0 anthranilate phosphoribosyltransferase compare
AO353_04105 -3.4 -10.9 argininosuccinate synthase compare
AO353_12365 -3.4 -5.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_03360 -3.3 -11.4 glucose-6-phosphate dehydrogenase compare
AO353_14595 -3.3 -12.6 carbonate dehydratase compare
AO353_09285 -3.3 -13.9 reactive intermediate/imine deaminase compare
AO353_25630 -3.3 -11.3 arginine N-succinyltransferase compare
AO353_12090 -3.2 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08045 -3.2 -17.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_10710 -3.2 -6.1 tryptophan synthase subunit beta compare
AO353_03010 -3.2 -7.6 succinylglutamate-semialdehyde dehydrogenase compare
AO353_07505 -3.1 -11.0 dethiobiotin synthetase compare
AO353_08510 -3.1 -7.2 3-phosphoglycerate dehydrogenase compare
AO353_14495 -3.1 -14.4 acetolactate synthase 3 catalytic subunit compare
AO353_09000 -3.1 -6.6 argininosuccinate lyase compare
AO353_19060 -3.1 -7.1 CysB family transcriptional regulator compare
AO353_05110 -3.1 -11.9 histidinol dehydrogenase compare
AO353_02685 -3.0 -5.0 phosphoribosylglycinamide formyltransferase compare
AO353_15925 -3.0 -11.9 2-isopropylmalate synthase compare
AO353_16940 -3.0 -7.8 deoxycytidine triphosphate deaminase compare
AO353_07520 -2.9 -13.1 8-amino-7-oxononanoate synthase compare
AO353_13100 -2.9 -2.8 GTPase RsgA compare
AO353_12115 -2.9 -3.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03795 -2.9 -6.0 fumarate hydratase compare
AO353_07355 -2.8 -7.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03580 -2.7 -4.5 ATP-dependent DNA helicase RuvB compare
AO353_03525 -2.7 -11.5 quinolinate synthase A compare
AO353_14400 -2.6 -5.6 Fis family transcriptional regulator compare
AO353_05105 -2.6 -12.0 histidinol-phosphate aminotransferase compare
AO353_08015 -2.5 -9.1 5,10-methylenetetrahydrofolate reductase compare
AO353_12520 -2.5 -11.1 glutamate synthase compare
AO353_05420 -2.4 -3.1 peptide chain release factor 3 compare
AO353_17620 -2.3 -16.0 L-aspartate oxidase compare
AO353_03415 -2.3 -7.8 glucokinase compare
AO353_02710 -2.3 -13.1 (p)ppGpp synthetase compare
AO353_12515 -2.3 -17.5 glutamate synthase compare
AO353_08780 -2.3 -7.5 5-formyltetrahydrofolate cyclo-ligase compare
AO353_10705 -2.3 -5.2 tryptophan synthase subunit alpha compare
AO353_02975 -2.2 -3.6 aspartate kinase compare
AO353_00495 -2.2 -3.5 DNA topoisomerase I compare
AO353_19360 -2.1 -3.4 peroxiredoxin compare
AO353_03250 -2.1 -3.4 gluconokinase compare
AO353_01350 -2.1 -7.1 4-amino-4-deoxychorismate lyase compare
AO353_25640 -2.1 -3.2 AsnC family transcriptional regulator compare
AO353_03245 -2.0 -9.9 permease DsdX compare
AO353_12500 -2.0 -2.4 shikimate kinase compare
AO353_10035 -2.0 -8.1 LysR family transcriptional regulator compare
AO353_04565 -2.0 -7.1 nucleoid-associated protein compare
AO353_10730 -2.0 -1.4 hypothetical protein compare
AO353_10030 -2.0 -9.9 pyruvate carboxylase subunit A compare
AO353_14775 -2.0 -6.6 hypothetical protein compare
AO353_02600 -2.0 -3.3 alpha-ribazole phosphatase compare
AO353_03615 -1.9 -4.2 cold-shock protein compare
AO353_02250 -1.9 -3.8 chorismate synthase compare
AO353_06040 -1.8 -4.6 exodeoxyribonuclease V subunit alpha compare
AO353_03020 -1.8 -5.7 arginine N-succinyltransferase compare
AO353_12105 -1.8 -6.5 peptidase S41 compare
AO353_14220 -1.8 -2.4 ribosomal large subunit pseudouridine synthase D compare
AO353_10025 -1.8 -11.4 pyruvate carboxylase subunit B compare
AO353_01355 -1.8 -7.7 3-oxoacyl-ACP synthase compare
AO353_20660 -1.8 -4.2 pseudouridine synthase compare
AO353_00825 -1.7 -4.5 porin compare
AO353_06050 -1.7 -7.3 exodeoxyribonuclease V subunit gamma compare
AO353_10430 -1.7 -3.3 chromosome partitioning protein ParB compare
AO353_14420 -1.7 -4.3 molecular chaperone DnaK compare
AO353_02060 -1.7 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_07075 -1.7 -4.7 elongation factor Tu compare
AO353_13605 -1.7 -7.9 oxidoreductase compare
AO353_19145 -1.6 -5.0 protease HtpX compare
AO353_16210 -1.6 -10.4 XRE family transcriptional regulator compare
AO353_03420 -1.6 -4.4 phosphogluconate dehydratase compare
AO353_06495 -1.6 -5.2 gamma-glutamyl phosphate reductase compare
AO353_13640 -1.6 -4.8 histidine kinase compare
AO353_08130 -1.5 -3.7 uracil phosphoribosyltransferase compare
AO353_03005 -1.5 -5.1 succinylarginine dihydrolase compare
AO353_16440 -1.5 -3.1 ArsC family transcriptional regulator compare
AO353_13140 -1.5 -5.5 tRNA dimethylallyltransferase compare
AO353_08265 -1.4 -5.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_11850 -1.4 -3.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_00515 -1.4 -3.9 hypothetical protein compare
AO353_08885 -1.4 -10.2 polyphosphate kinase compare
AO353_10445 -1.4 -2.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_10040 -1.3 -7.0 transcriptional regulator compare
AO353_09890 -1.3 -4.2 phosphate ABC transporter ATP-binding protein compare
AO353_03055 -1.3 -4.9 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) compare
AO353_08880 -1.3 -2.2 exopolyphosphatase compare
AO353_18540 -1.3 -2.9 pseudouridine synthase compare
AO353_08165 -1.3 -3.0 pyrroline-5-carboxylate reductase compare
AO353_06045 -1.3 -5.1 exodeoxyribonuclease V subunit beta compare
AO353_03590 -1.2 -2.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_11770 -1.2 -1.7 molecular chaperone Hsp33 compare
AO353_02720 -1.2 -4.8 cysteine synthase compare
AO353_20630 -1.2 -5.4 SAM-dependent methyltransferase compare
AO353_02595 -1.2 -2.9 cobalamin synthase compare
AO353_21630 -1.2 -2.0 precorrin-4 C11-methyltransferase compare
AO353_11750 -1.2 -2.6 ATPase compare
AO353_03605 -1.1 -1.6 FmdB family transcriptional regulator compare
AO353_11165 -1.1 -6.5 hypothetical protein compare
AO353_21625 -1.1 -2.0 Fe/S biogenesis protein NfuA compare
AO353_05080 -1.1 -7.4 sulfate adenylyltransferase compare
AO353_13610 -1.1 -2.8 precorrin isomerase compare
AO353_21615 -1.1 -7.7 methionine synthase compare
AO353_06160 -1.1 -4.2 transcriptional regulator compare
AO353_27650 -1.1 -4.2 cell division protein FtsK compare
AO353_22810 -1.1 -1.6 hypothetical protein compare
AO353_12690 -1.1 -1.1 acyl carrier protein compare
AO353_15185 -1.1 -3.4 ATPase compare
AO353_06720 -1.1 -1.7 NrdR family transcriptional regulator compare
AO353_08505 -1.1 -6.8 FAD-linked oxidase compare
AO353_02605 -1.0 -5.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_27090 -1.0 -1.8 hypothetical protein compare
AO353_02040 -1.0 -1.8 integration host factor subunit beta compare
AO353_09745 -1.0 -1.9 hypothetical protein compare
AO353_12765 -1.0 -2.3 transcriptional regulator compare
AO353_12420 -1.0 -2.6 predicted FeS cluster maintenance protein (from data) compare
AO353_18505 -1.0 -1.8 translation initiation factor 2 compare
AO353_13200 -1.0 -6.6 exoribonuclease R compare
AO353_13600 -1.0 -3.3 precorrin-6Y C5,15-methyltransferase compare
AO353_23495 -1.0 -2.3 SAM-dependent methyltransferase compare
AO353_13620 -1.0 -6.4 precorrin-3B C17-methyltransferase compare
AO353_20170 -1.0 -4.2 trigger factor compare
AO353_02625 -1.0 -6.0 cobalamin biosynthesis protein CobD compare
AO353_05075 -1.0 -5.9 adenylylsulfate kinase compare
AO353_16805 -1.0 -3.7 recombinase RecA compare
AO353_09050 -1.0 -2.2 recombinase XerC compare
AO353_10495 -1.0 -2.8 serine hydroxymethyltransferase compare
AO353_03425 -1.0 -5.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_02615 -1.0 -4.6 cobyric acid synthase compare
AO353_02195 -1.0 -3.5 spermidine synthase compare
AO353_21905 -1.0 -3.0 hypothetical protein compare
AO353_18925 -1.0 -2.5 ATPase compare
AO353_03390 -0.9 -6.8 sugar ABC transporter permease compare
AO353_03410 -0.9 -1.7 chemotaxis protein CheY compare
AO353_06455 -0.9 -1.5 D-alanyl-D-alanine carboxypeptidase compare
AO353_16745 -0.9 -2.3 ArsR family transcriptional regulator compare
AO353_21665 -0.9 -3.1 magnesium chelatase compare
AO353_18005 -0.9 -3.8 allophanate hydrolase compare
AO353_12080 -0.9 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_14370 -0.9 -4.8 glucose-6-phosphate isomerase compare
AO353_27685 -0.9 -3.7 cold-shock protein compare
AO353_21660 -0.9 -6.8 cobalamin biosynthesis protein CobN compare
AO353_27995 -0.9 -3.6 RpiR family transcriptional regulator compare
AO353_04365 -0.9 -3.1 recombinase XerD compare
AO353_04520 -0.9 -3.1 elongation factor 4 compare
AO353_03035 -0.9 -3.6 AraC family transcriptional regulator compare
AO353_02940 -0.9 -2.0 DNA-binding protein compare
AO353_15725 -0.9 -2.6 hypothetical protein compare
AO353_12510 -0.9 -5.8 cell division protein compare
AO353_24340 -0.9 -1.5 TetR family transcriptional regulator compare
AO353_09040 -0.9 -1.1 diaminopimelate epimerase compare
AO353_11485 -0.9 -3.2 hypothetical protein compare
AO353_22025 -0.9 -1.5 iron-sulfur cluster repair di-iron protein compare
AO353_06460 -0.9 -4.4 hypothetical protein compare
AO353_05550 -0.9 -4.1 pseudouridine synthase compare
AO353_13245 -0.9 -4.4 hypothetical protein compare
AO353_00460 -0.8 -2.5 TetR family transcriptional regulator compare
AO353_17855 -0.8 -1.7 ribonuclease D compare
AO353_21465 -0.8 -2.5 cation:proton antiporter compare
AO353_00750 -0.8 -2.1 GntR family transcriptional regulator compare
AO353_06100 -0.8 -1.9 thymidylate synthase compare
AO353_10440 -0.8 -3.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_01410 -0.8 -2.4 ribonuclease E compare
AO353_13615 -0.8 -6.1 precorrin-2 C20-methyltransferase compare
AO353_17160 -0.8 -2.1 aspartate-semialdehyde dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Citrulline in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Citrulline across organisms