Experiment set5IT025 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium selenate 0.5 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2487 -4.2 -2.0 FIG00956090: hypothetical protein compare
Pf6N2E2_4071 -4.0 -6.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2574 -3.8 -2.6 Flagellar synthesis regulator FleN compare
Pf6N2E2_3833 -3.7 -7.5 hypothetical protein compare
Pf6N2E2_3282 -3.6 -2.5 FIG005080: Possible exported protein compare
Pf6N2E2_5956 -3.4 -7.7 FIG004453: protein YceG like compare
Pf6N2E2_5069 -3.3 -6.2 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3782 -3.3 -5.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3834 -3.3 -8.5 Lipoprotein NlpD compare
Pf6N2E2_3841 -3.2 -6.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3253 -3.1 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5150 -3.0 -7.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2675 -3.0 -1.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5671 -2.9 -4.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4585 -2.9 -13.2 Cell division protein FtsX compare
Pf6N2E2_3842 -2.9 -4.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2278 -2.9 -15.7 Transcription-repair coupling factor compare
Pf6N2E2_5068 -2.8 -11.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_4584 -2.8 -3.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5771 -2.8 -9.0 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_3251 -2.7 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3252 -2.7 -8.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3460 -2.7 -2.5 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2384 -2.7 -5.0 CmpX compare
Pf6N2E2_2274 -2.7 -6.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4153 -2.6 -1.8 Sensory box histidine kinase compare
Pf6N2E2_5342 -2.6 -2.9 21 kDa hemolysin precursor compare
Pf6N2E2_5245 -2.6 -8.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3095 -2.6 -1.7 hypothetical protein compare
Pf6N2E2_144 -2.6 -16.3 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5508 -2.3 -3.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3658 -2.3 -7.8 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2755 -2.3 -2.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3941 -2.2 -3.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_445 -2.2 -6.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5178 -2.2 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2219 -2.2 -2.7 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3610 -2.2 -5.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_145 -2.1 -6.5 putative exported protein compare
Pf6N2E2_3839 -2.1 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4204 -2.0 -2.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_446 -1.9 -7.1 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_3617 -1.9 -5.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4624 -1.9 -1.2 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4369 -1.9 -2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2201 -1.8 -3.8 Transmembrane regulator protein PrtR compare
Pf6N2E2_2080 -1.7 -2.0 hypothetical protein compare
Pf6N2E2_2788 -1.7 -3.4 Transcriptional regulator, AsnC family compare
Pf6N2E2_3661 -1.7 -4.5 hypothetical protein compare
Pf6N2E2_3783 -1.7 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5172 -1.7 -2.1 FOG: TPR repeat compare
Pf6N2E2_2261 -1.7 -5.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_37 -1.6 -3.7 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_4187 -1.6 -4.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1699 -1.6 -2.7 FIG00955832: hypothetical protein compare
Pf6N2E2_3791 -1.6 -7.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2824 -1.6 -8.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3908 -1.6 -6.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2218 -1.6 -3.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2825 -1.6 -3.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4454 -1.6 -4.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1034 -1.5 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_945 -1.5 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_1056 -1.5 -0.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1886 -1.5 -2.3 hypothetical protein compare
Pf6N2E2_2211 -1.5 -6.7 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_3792 -1.4 -5.1 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5520 -1.4 -5.0 Sensory box histidine kinase compare
Pf6N2E2_2634 -1.4 -7.6 Potassium uptake protein TrkH compare
Pf6N2E2_2126 -1.4 -4.9 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_1705 -1.4 -1.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3940 -1.4 -6.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3179 -1.3 -2.3 FIG021952: putative membrane protein compare
Pf6N2E2_3406 -1.3 -4.0 putative ABC transporter ATP-binding protein compare
Pf6N2E2_3260 -1.3 -4.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_1502 -1.3 -1.6 Two-component system regulatory protein compare
Pf6N2E2_4120 -1.3 -6.8 Trk system potassium uptake protein TrkA compare
Pf6N2E2_3258 -1.3 -3.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3659 -1.3 -4.7 Protein fixF compare
Pf6N2E2_440 -1.3 -1.5 FIG00954920: hypothetical protein compare
Pf6N2E2_2510 -1.3 -3.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4206 -1.2 -2.1 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1676 -1.2 -1.9 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_3665 -1.2 -1.0 serine/threonine protein kinase compare
Pf6N2E2_2519 -1.2 -1.2 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5780 -1.2 -5.3 Periplasmic protease compare
Pf6N2E2_1087 -1.2 -5.8 Iron siderophore sensor protein compare
Pf6N2E2_4205 -1.2 -2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1040 -1.2 -1.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_40 -1.1 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_42 -1.1 -4.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5816 -1.1 -1.9 Smr domain protein compare
Pf6N2E2_3737 -1.1 -2.3 General secretion pathway protein M compare
Pf6N2E2_3303 -1.1 -2.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5527 -1.1 -1.7 Cold shock protein CspC compare
Pf6N2E2_2013 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_4451 -1.1 -4.2 FIG139438: lipoprotein B compare
Pf6N2E2_4556 -1.1 -2.2 FIG00953078: hypothetical protein compare
Pf6N2E2_1431 -1.1 -1.5 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_5544 -1.1 -5.1 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_1596 -1.1 -1.3 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_3060 -1.1 -2.8 Outer membrane protein H precursor compare
Pf6N2E2_1147 -1.1 -1.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_3534 -1.0 -1.8 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_4638 -1.0 -2.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2473 -1.0 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_2984 -1.0 -2.0 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_3271 -1.0 -1.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5605 -1.0 -2.0 FxsA protein compare
Pf6N2E2_660 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_2311 -1.0 -4.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2124 -1.0 -1.5 Mg(2+) transport ATPase protein C compare
Pf6N2E2_3835 -1.0 -2.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3301 -1.0 -6.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_1625 -1.0 -2.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_156 -1.0 -1.5 Carbon storage regulator compare
Pf6N2E2_4372 -1.0 -3.8 FIG00460773: hypothetical protein compare
Pf6N2E2_2440 -1.0 -1.3 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_2318 -1.0 -4.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2526 -1.0 -3.6 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_4534 -1.0 -3.1 hypothetical protein compare
Pf6N2E2_5430 -1.0 -4.5 Transglycosylase, Slt family compare
Pf6N2E2_2425 -0.9 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5494 -0.9 -3.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_1162 -0.9 -1.2 Transmembrane amino acid efflux protein compare
Pf6N2E2_4969 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_4276 -0.9 -3.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5406 -0.9 -2.1 FIG00958224: hypothetical protein compare
Pf6N2E2_4999 -0.9 -3.3 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_5156 -0.9 -1.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4537 -0.9 -1.5 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_3461 -0.9 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2506 -0.9 -6.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_855 -0.9 -2.6 Transcriptional regulator, IclR family compare
Pf6N2E2_3039 -0.9 -2.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3300 -0.9 -2.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3292 -0.9 -3.3 K+-dependent Na+/Ca+ exchanger related-protein compare
Pf6N2E2_3607 -0.9 -4.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2503 -0.9 -1.6 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2266 -0.9 -2.1 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_4416 -0.9 -1.1 Tyrosine recombinase XerC compare
Pf6N2E2_84 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_4540 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_2064 -0.9 -1.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3561 -0.9 -2.1 Phosphate starvation-inducible protein psiF precursor compare
Pf6N2E2_1028 -0.9 -1.9 Transcriptional regulator, LysR family compare
Pf6N2E2_4173 -0.9 -4.0 Methionine ABC transporter permease protein compare
Pf6N2E2_433 -0.9 -3.1 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf6N2E2_4570 -0.9 -1.4 Cation/multidrug efflux pump compare
Pf6N2E2_963 -0.9 -2.4 probable exported protein STY4558 compare
Pf6N2E2_5338 -0.9 -4.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_1797 -0.9 -1.9 Transcriptional regulator compare
Pf6N2E2_2999 -0.9 -2.1 probable tail fiber assembly protein compare
Pf6N2E2_5237 -0.8 -1.1 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2340 -0.8 -2.5 Transcriptional regulator, GntR family compare
Pf6N2E2_3192 -0.8 -3.1 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_5155 -0.8 -1.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4562 -0.8 -1.3 L-cystine uptake protein TcyP compare
Pf6N2E2_1273 -0.8 -2.4 Probable RND efflux membrane fusion protein compare
Pf6N2E2_5716 -0.8 -4.0 Cytochrome c-type biogenesis protein ResA compare
Pf6N2E2_2112 -0.8 -3.0 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) compare
Pf6N2E2_4803 -0.8 -1.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2459 -0.8 -1.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_2822 -0.8 -3.2 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_5339 -0.8 -3.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4612 -0.8 -3.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_1128 -0.8 -0.9 Two-component response regulator compare
Pf6N2E2_3901 -0.8 -1.8 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_1433 -0.8 -2.0 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4661 -0.8 -1.4 KluA regulatory protein compare
Pf6N2E2_3122 -0.8 -1.4 Chemotaxis signal transduction protein compare
Pf6N2E2_2310 -0.8 -4.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5943 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_3539 -0.8 -2.0 FIG00955840: hypothetical protein compare
Pf6N2E2_5964 -0.8 -3.1 FIG003620: Proteophosphoglycan precursor (Fragment) compare
Pf6N2E2_1743 -0.8 -2.1 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_1031 -0.8 -1.8 Alkanesulfonates transport system permease protein compare
Pf6N2E2_58 -0.8 -1.3 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_3447 -0.8 -2.3 FIG00959330: hypothetical protein compare
Pf6N2E2_1522 -0.8 -1.5 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_3830 -0.8 -3.1 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_4352 -0.8 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_1131 -0.8 -2.8 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_3829 -0.8 -2.1 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_1633 -0.8 -2.1 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_704 -0.8 -1.9 Cytochrome c551/c552 compare
Pf6N2E2_64 -0.8 -2.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5049 -0.8 -1.6 acetyltransferase, GNAT family compare
Pf6N2E2_2127 -0.8 -1.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5647 -0.8 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_3257 -0.7 -2.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5640 -0.7 -1.1 FIG00955597: hypothetical protein compare
Pf6N2E2_6030 -0.7 -2.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3151 -0.7 -2.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2514 -0.7 -2.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5841 -0.7 -0.8 GlcG protein compare
Pf6N2E2_5312 -0.7 -1.3 FIG00964214: hypothetical protein compare
Pf6N2E2_546 -0.7 -1.3 FIG00966904: hypothetical protein compare
Pf6N2E2_1322 -0.7 -1.6 MoaE protein compare
Pf6N2E2_1953 -0.7 -2.7 Uncharacterized conserved protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium selenate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium selenate across organisms