Experiment set5IT025 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Gly-Glu nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
AO353_05390 +6.0 13.2 peptide ABC transporter substrate-binding protein conserved
AO353_20835 +4.0 18.3 Ribokinase (EC 2.7.1.15) (from data) conserved
AO353_20370 +3.9 18.8 MerR family transcriptional regulator compare
AO353_20830 +3.7 26.9 LacI family transcriptional regulator conserved
AO353_03020 +3.2 20.4 arginine N-succinyltransferase compare
AO353_05385 +3.2 10.6 porin conserved
AO353_04200 +3.2 25.2 TetR family transcriptional regulator conserved
AO353_03015 +3.1 12.3 arginine N-succinyltransferase compare
AO353_21830 +2.8 24.2 chemotaxis protein CheY compare
AO353_03005 +2.7 15.0 succinylarginine dihydrolase compare
AO353_20825 +2.3 8.1 ABC transporter permease conserved
AO353_03515 +2.3 5.1 cold-shock protein compare
AO353_02735 +2.3 21.1 chemotaxis protein CheY compare
AO353_20865 +2.2 6.7 cold-shock protein compare
AO353_03010 +2.2 12.6 succinylglutamate-semialdehyde dehydrogenase compare
AO353_03045 +2.1 10.7 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) compare
AO353_20335 +1.9 10.6 3-methylcrotonyl-CoA carboxylase compare
AO353_13200 +1.8 14.1 exoribonuclease R compare
AO353_09275 +1.8 5.6 DNA-directed RNA polymerase subunit omega compare
AO353_02040 +1.8 5.6 integration host factor subunit beta compare
AO353_03050 +1.8 6.2 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
AO353_05625 +1.8 4.3 transcription elongation factor GreA compare
AO353_09945 +1.5 6.9 LysR family transcriptional regulator compare
AO353_03040 +1.5 6.0 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
AO353_20840 +1.5 3.7 ribose pyranase compare
AO353_05550 +1.4 8.2 pseudouridine synthase compare
AO353_12810 +1.4 12.4 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) compare
AO353_27995 +1.4 6.6 RpiR family transcriptional regulator compare
AO353_09250 +1.4 4.5 exodeoxyribonuclease III compare
AO353_14590 +1.3 3.7 serine kinase/phosphatase compare
AO353_06540 +1.3 3.9 hypothetical protein compare
AO353_13660 +1.2 8.1 tRNA-dihydrouridine synthase B compare
AO353_14030 +1.2 9.3 ABC transporter ATP-binding protein compare
AO353_19340 +1.2 10.3 amino acid ABC transporter substrate-binding protein compare
AO353_06710 +1.2 2.7 riboflavin synthase subunit alpha compare
AO353_08130 +1.2 3.9 uracil phosphoribosyltransferase compare
AO353_08690 +1.2 5.2 acetylornithine deacetylase conserved
AO353_26525 +1.1 3.4 hypothetical protein compare
AO353_11770 +1.1 2.5 molecular chaperone Hsp33 compare
AO353_17350 +1.1 8.8 acyl-CoA dehydrogenase compare
AO353_20380 +1.0 7.2 acyl-CoA dehydrogenase compare
AO353_12565 +1.0 2.9 type II secretion system protein GspH compare
AO353_03290 +1.0 2.0 peptide deformylase compare
AO353_09720 +1.0 2.1 hypothetical protein compare
AO353_21290 +1.0 3.1 hypothetical protein compare
AO353_00510 +1.0 5.6 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_07495 +1.0 8.4 acyl-CoA dehydrogenase compare
AO353_11185 +1.0 7.7 channel protein TolC compare
AO353_07610 +0.9 1.8 hypothetical protein compare
AO353_13150 +0.9 6.1 GTPase HflX compare
AO353_10990 +0.9 5.7 glutamate:protein symporter compare
AO353_04190 +0.9 2.5 glycerol-3-phosphate dehydrogenase compare
AO353_14470 +0.9 7.5 hypothetical protein compare
AO353_27660 +0.9 3.2 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_03410 +0.9 3.2 chemotaxis protein CheY compare
AO353_10510 +0.9 1.6 benzoate transporter compare
AO353_20565 +0.9 1.5 tRNA-Ala compare
AO353_06525 +0.9 3.0 dehydratase compare
AO353_11190 +0.9 7.1 ABC transporter compare
AO353_13300 +0.9 2.9 LOG family protein compare
AO353_12720 +0.9 2.1 hypothetical protein compare
AO353_14220 +0.8 1.4 ribosomal large subunit pseudouridine synthase D compare
AO353_18960 +0.8 1.9 terminase compare
AO353_11195 +0.8 6.8 hemolysin secretion protein D compare
AO353_11155 +0.8 6.5 thioesterase compare
AO353_27890 +0.8 3.8 RpiR family transcriptional regulator compare
AO353_22025 +0.8 2.1 iron-sulfur cluster repair di-iron protein compare
AO353_06745 +0.8 1.5 zinc-binding protein compare
AO353_07645 +0.8 1.2 sarcosine oxidase subunit gamma compare
AO353_11180 +0.8 7.2 large adhesive protein compare
AO353_07770 +0.8 4.2 AraC family transcriptional regulator compare
AO353_11740 +0.8 5.0 DNA damage response protein (yhgF like) (from data) compare
AO353_04965 +0.8 1.4 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_11920 +0.8 1.4 hypothetical protein compare
AO353_14085 +0.8 3.1 hypothetical protein compare
AO353_17205 +0.8 2.0 beta-ketoadipyl CoA thiolase compare
AO353_11170 +0.7 5.5 hypothetical protein compare
AO353_20535 +0.7 2.9 hypothetical protein compare
AO353_18600 +0.7 3.3 flagellar basal-body rod protein FlgG compare
AO353_09265 +0.7 1.5 hypothetical protein compare
AO353_09885 +0.7 1.2 transcriptional regulator PhoU compare
AO353_25640 +0.7 1.4 AsnC family transcriptional regulator compare
AO353_17175 +0.7 2.2 beta-ketoadipyl CoA thiolase compare
AO353_15480 +0.7 1.5 hypothetical protein compare
AO353_24260 +0.7 1.3 hypothetical protein compare
AO353_20870 +0.7 3.9 hypothetical protein compare
AO353_01270 +0.7 2.6 2-dehydro-3-deoxygalactonokinase compare
AO353_03405 +0.7 3.8 histidine kinase compare
AO353_24595 +0.7 2.0 hypothetical protein compare
AO353_18130 +0.7 1.9 hypothetical protein compare
AO353_17785 +0.7 1.5 hypothetical protein compare
AO353_19605 +0.7 1.6 hypothetical protein compare
AO353_16835 +0.7 1.8 LuxR family transcriptional regulator compare
AO353_07315 +0.6 1.1 rRNA methyltransferase compare
AO353_13420 +0.6 1.6 hypothetical protein compare
AO353_03815 +0.6 1.7 heme utilization protein compare
AO353_08210 +0.6 2.9 tRNA (guanine-N7)-methyltransferase compare
AO353_15490 +0.6 1.3 hypothetical protein compare
AO353_09915 +0.6 3.8 long-chain acyl-CoA thioester hydrolase compare
AO353_03025 +0.6 2.1 acetylornithine aminotransferase compare
AO353_09045 +0.6 1.0 hypothetical protein compare
AO353_09660 +0.6 1.3 hypothetical protein compare
AO353_03380 +0.6 2.6 sugar ABC transporter ATP-binding protein compare
AO353_03055 +0.6 3.7 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) compare
AO353_09905 +0.6 4.0 phosphate-binding protein compare
AO353_23410 +0.6 1.3 hypothetical protein compare
AO353_03395 +0.6 3.5 sugar ABC transporter substrate-binding protein compare
AO353_00665 +0.6 2.4 adenine phosphoribosyltransferase compare
AO353_02570 +0.6 1.8 hypothetical protein compare
AO353_24605 +0.6 1.5 hypothetical protein compare
AO353_04185 +0.6 3.5 DeoR family transcriptional regulator compare
AO353_26100 +0.6 1.3 lysozyme compare
AO353_17985 +0.6 2.6 LysR family transcriptional regulator compare
AO353_15565 +0.6 2.8 hypothetical protein compare
AO353_05445 +0.6 4.5 ornithine decarboxylase compare
AO353_04970 +0.6 2.1 cell division protein DedD compare
AO353_16765 +0.6 1.4 hypothetical protein compare
AO353_26465 +0.6 2.5 hypothetical protein compare
AO353_21430 +0.6 1.4 hypothetical protein compare
AO353_13095 +0.6 2.0 flagellar motor protein MotB compare
AO353_23950 +0.6 1.5 hypothetical protein compare
AO353_09315 +0.6 3.9 LysR family transcriptional regulator compare
AO353_10780 +0.5 0.8 DNA-binding protein compare
AO353_00385 +0.5 2.3 glycerophosphodiester phosphodiesterase compare
AO353_25045 +0.5 3.7 AraC family transcriptional regulator compare
AO353_19030 +0.5 3.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_17820 +0.5 1.9 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO353_28200 +0.5 2.1 ribosomal protein S3AE compare
AO353_16375 +0.5 0.7 hypothetical protein compare
AO353_00330 +0.5 3.7 hypothetical protein compare
AO353_26385 +0.5 2.2 hypothetical protein compare
AO353_06135 +0.5 2.2 NADPH:quinone reductase compare
AO353_05880 +0.5 1.3 plasmid stabilization protein compare
AO353_12575 +0.5 1.7 type II secretion system protein GspJ compare
AO353_20115 +0.5 1.8 LysR family transcriptional regulator compare
AO353_00325 +0.5 1.9 pilus assembly protein compare
AO353_27935 +0.5 1.9 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_21255 +0.5 2.5 ABC transporter ATP-binding protein compare
AO353_24175 +0.5 1.4 hypothetical protein compare
AO353_11160 +0.5 2.7 GntR family transcriptional regulator compare
AO353_05270 +0.5 2.3 hypothetical protein compare
AO353_11050 +0.5 1.3 hypothetical protein compare
AO353_21455 +0.5 1.2 cation:proton antiporter compare
AO353_04580 +0.5 1.7 GIY-YIG nuclease compare
AO353_00485 +0.5 2.9 hypothetical protein compare
AO353_01595 +0.5 1.2 Flp pilus assembly protein CpaB compare
AO353_08615 +0.5 2.3 hypothetical protein compare
AO353_12415 +0.5 3.6 poly(R)-hydroxyalkanoic acid synthase compare
AO353_21435 +0.5 3.0 ABC transporter substrate-binding protein compare
AO353_19965 +0.5 1.8 phosphopantetheine-binding protein compare
AO353_17750 +0.5 1.3 transcriptional regulator compare
AO353_20925 +0.5 0.8 hypothetical protein compare
AO353_03100 +0.5 1.4 XRE family transcriptional regulator compare
AO353_27525 +0.5 1.3 AraC family transcriptional regulator compare
AO353_05520 +0.5 2.5 nicotinate-nucleotide pyrophosphorylase compare
AO353_11035 +0.5 2.9 hypothetical protein compare
AO353_25050 +0.5 1.6 AraC family transcriptional regulator compare
AO353_27905 +0.5 2.4 N-formylglutamate amidohydrolase compare
AO353_14585 +0.5 2.2 ribosomal-protein-alanine acetyltransferase compare
AO353_20255 +0.5 1.9 transcriptional regulator compare
AO353_00090 +0.5 1.2 hypothetical protein compare
AO353_18500 +0.5 1.4 chemotaxis protein CheY compare
AO353_10900 +0.5 3.0 hypothetical protein compare
AO353_13720 +0.5 3.8 arginine decarboxylase compare
AO353_28330 +0.5 1.7 carbon-nitrogen hydrolase compare
AO353_28080 +0.5 1.5 hypothetical protein compare
AO353_17665 +0.5 2.8 glycine cleavage system protein R compare
AO353_17520 +0.5 1.4 hypothetical protein compare
AO353_24000 +0.5 1.2 isochorismate synthase compare
AO353_12555 +0.5 2.7 type II secretion system protein GspF compare
AO353_22200 +0.5 1.5 metal-binding protein compare
AO353_08265 +0.5 2.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_25955 +0.5 1.4 NIPSNAP family containing protein compare
AO353_26925 +0.5 2.2 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) compare
AO353_20390 +0.5 1.8 rhodanese compare
AO353_25925 +0.5 1.1 hypothetical protein compare
AO353_10085 +0.5 1.0 pyridoxamine kinase compare
AO353_00795 +0.5 2.8 MFS transporter compare
AO353_14035 +0.5 1.5 transcription elongation factor GreAB compare
AO353_15535 +0.5 1.5 hypothetical protein compare
AO353_29005 +0.5 1.3 hypothetical protein compare
AO353_00610 +0.5 0.9 cytochrome C oxidase Cbb3 compare
AO353_10905 +0.5 2.9 zinc ABC transporter ATP-binding protein compare
AO353_16675 +0.5 1.7 phage tail protein compare
AO353_00590 +0.4 1.4 cytochrome C oxidase Cbb3 compare
AO353_26900 +0.4 1.8 glycerate kinase compare
AO353_26795 +0.4 1.5 NAD-dependent deacetylase compare
AO353_11865 +0.4 2.1 ATPase compare
AO353_27855 +0.4 1.2 MarR family transcriptional regulator compare
AO353_27500 +0.4 1.0 hypothetical protein compare
AO353_11785 +0.4 1.7 hypothetical protein compare
AO353_00435 +0.4 3.8 transcription-repair coupling factor compare
AO353_24405 +0.4 1.4 ArsR family transcriptional regulator compare
AO353_23155 +0.4 1.7 IclR family transcriptional regulator compare
AO353_18985 +0.4 1.4 hypothetical protein compare
AO353_03000 +0.4 0.9 topoisomerase II compare
AO353_08620 +0.4 1.1 hypothetical protein compare
AO353_02325 +0.4 1.7 OHCU decarboxylase compare
AO353_16030 +0.4 1.9 peptidase inhibitor I42 compare
AO353_19780 +0.4 1.8 histidine kinase compare


Specific Phenotypes

For 26 genes in this experiment

For nitrogen source Gly-Glu in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Gly-Glu across organisms