Experiment set5IT025 for Pseudomonas fluorescens FW300-N1B4

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Minimal media pH8

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_15 -6.0 -4.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_5665 -5.1 -8.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1533 -4.6 -12.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1408 -4.5 -5.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2880 -4.4 -17.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2338 -4.4 -11.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1307 -4.3 -5.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2486 -4.3 -4.2 hypothetical protein compare
Pf1N1B4_6 -4.1 -8.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1831 -4.1 -15.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1534 -4.0 -22.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1624 -3.9 -10.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1565 -3.9 -5.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2272 -3.8 -7.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2548 -3.6 -10.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2545 -3.5 -16.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_12 -3.5 -9.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2112 -3.5 -17.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2010 -3.4 -9.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1830 -3.4 -9.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_350 -3.4 -9.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2303 -3.4 -13.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1627 -3.4 -5.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2384 -3.3 -12.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2009 -3.3 -8.1 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_742 -3.3 -12.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1626 -3.3 -9.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4065 -3.2 -8.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1067 -3.2 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_58 -3.2 -7.7 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_3697 -3.2 -11.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2282 -3.2 -11.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2858 -3.1 -14.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_5666 -3.1 -5.5 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2879 -3.1 -8.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2549 -3.1 -8.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2337 -3.0 -6.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1153 -3.0 -5.5 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2377 -3.0 -9.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1315 -2.9 -8.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2878 -2.9 -10.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1434 -2.9 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2547 -2.9 -5.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2489 -2.8 -7.0 Biotin synthesis protein BioH compare
Pf1N1B4_2011 -2.8 -9.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2491 -2.7 -5.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_847 -2.7 -7.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_3168 -2.6 -4.3 AmpG permease compare
Pf1N1B4_2488 -2.5 -7.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_3812 -2.4 -12.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_626 -2.4 -8.6 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_762 -2.4 -6.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2280 -2.4 -11.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2874 -2.3 -3.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1906 -2.3 -4.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3506 -2.2 -6.0 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2487 -2.2 -7.5 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_27 -2.2 -6.6 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_980 -2.2 -4.2 hypothetical protein compare
Pf1N1B4_3833 -2.1 -9.1 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2850 -2.1 -10.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_3081 -2.0 -16.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2490 -2.0 -7.5 Biotin synthesis protein BioC compare
Pf1N1B4_2208 -1.9 -7.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_600 -1.9 -5.6 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_3518 -1.9 -3.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1057 -1.8 -4.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1625 -1.7 -2.5 FIG00956267: hypothetical protein compare
Pf1N1B4_1610 -1.7 -5.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1535 -1.7 -3.0 hypothetical protein compare
Pf1N1B4_3998 -1.6 -5.0 putative exported protein compare
Pf1N1B4_2859 -1.6 -10.0 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1668 -1.6 -7.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_578 -1.6 -4.1 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_715 -1.6 -5.6 Iron-regulated protein A precursor compare
Pf1N1B4_1329 -1.6 -5.5 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_3322 -1.5 -8.0 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_1611 -1.5 -4.9 Nitrogen regulation protein NR(I) compare
Pf1N1B4_327 -1.5 -2.3 hypothetical protein compare
Pf1N1B4_3692 -1.5 -4.4 Chaperone protein HtpG compare
Pf1N1B4_602 -1.5 -3.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_3997 -1.5 -6.4 Uncharacterized protein YtfM precursor compare
Pf1N1B4_1317 -1.5 -3.3 Sensor histidine kinase/response regulator compare
Pf1N1B4_2005 -1.4 -2.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1566 -1.4 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2853 -1.4 -2.0 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_3152 -1.4 -5.2 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_2225 -1.3 -8.7 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_567 -1.3 -2.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_718 -1.3 -6.6 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_716 -1.3 -3.4 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_717 -1.3 -6.7 Iron-regulated protein A precursor compare
Pf1N1B4_3907 -1.3 -3.5 FIG00953287: hypothetical protein compare
Pf1N1B4_4299 -1.3 -2.9 sensor histidine kinase compare
Pf1N1B4_1328 -1.2 -3.2 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_3779 -1.2 -3.1 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_3443 -1.2 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_3713 -1.2 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_4028 -1.2 -3.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1936 -1.2 -3.8 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_2912 -1.1 -2.4 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_4041 -1.1 -3.4 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2893 -1.1 -5.3 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_603 -1.1 -2.4 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_2695 -1.1 -2.6 Rare lipoprotein A precursor compare
Pf1N1B4_1619 -1.1 -7.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_1331 -1.1 -3.3 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_3184 -1.1 -2.2 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_2851 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_419 -1.1 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_5864 -1.1 -2.0 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_929 -1.0 -2.4 FIG00964214: hypothetical protein compare
Pf1N1B4_3451 -1.0 -3.2 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_4860 -1.0 -3.1 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_606 -1.0 -2.5 Iron siderophore sensor protein compare
Pf1N1B4_675 -1.0 -3.1 hypothetical protein compare
Pf1N1B4_652 -1.0 -6.1 Sensory box histidine kinase compare
Pf1N1B4_2917 -1.0 -6.3 FIG140336: TPR domain protein compare
Pf1N1B4_3991 -1.0 -2.1 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_4980 -1.0 -2.5 putative lipoprotein compare
Pf1N1B4_5357 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_3328 -0.9 -2.1 Rhodanese-like domain protein compare
Pf1N1B4_6041 -0.9 -1.9 Carbon storage regulator compare
Pf1N1B4_1367 -0.9 -3.3 Glycine cleavage system transcriptional activator compare
Pf1N1B4_5575 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_2621 -0.9 -2.0 PspA/IM30 family protein compare
Pf1N1B4_630 -0.9 -3.8 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf1N1B4_4043 -0.9 -3.4 Type II and III secretion system family protein compare
Pf1N1B4_2959 -0.9 -4.4 FIG067310: hypothetical protein compare
Pf1N1B4_1236 -0.9 -5.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2273 -0.9 -2.7 hypothetical protein compare
Pf1N1B4_1617 -0.9 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5652 -0.9 -2.5 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_257 -0.9 -4.3 sensor histidine kinase/response regulator compare
Pf1N1B4_1653 -0.9 -5.0 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_3709 -0.9 -3.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_3750 -0.9 -2.3 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_338 -0.9 -2.2 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_219 -0.9 -2.3 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_1052 -0.9 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_3817 -0.9 -4.3 FIG008443: hypothetical protein compare
Pf1N1B4_1544 -0.9 -4.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2173 -0.8 -2.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_5675 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_3707 -0.8 -4.7 Cobyrinic acid A,C-diamide synthase compare
Pf1N1B4_335 -0.8 -5.5 Glycosyltransferase compare
Pf1N1B4_623 -0.8 -2.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_3715 -0.8 -2.7 Cobalamin synthase compare
Pf1N1B4_2071 -0.8 -2.0 Protein phosphatase ImpM compare
Pf1N1B4_5699 -0.8 -1.5 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_4132 -0.8 -1.6 Mobile element protein compare
Pf1N1B4_2105 -0.8 -2.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_569 -0.8 -3.2 Ribonuclease BN (EC 3.1.-.-) compare
Pf1N1B4_6045 -0.8 -2.1 CigR (Putative inner membrane protein) compare
Pf1N1B4_1870 -0.8 -2.6 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1 -0.8 -1.4 Colicin V production protein compare
Pf1N1B4_4931 -0.8 -2.2 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_4403 -0.8 -1.3 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_1460 -0.8 -6.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf1N1B4_364 -0.8 -2.9 Rhodanese domain protein UPF0176 compare
Pf1N1B4_5737 -0.8 -2.6 Nitrate/nitrite transporter compare
Pf1N1B4_5383 -0.8 -5.6 hypothetical protein compare
Pf1N1B4_13 -0.8 -1.4 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_2209 -0.8 -3.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1243 -0.8 -2.3 ABC transporter ATP-binding protein compare
Pf1N1B4_188 -0.8 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4140 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_2145 -0.8 -1.5 Translation initiation inhibitor compare
Pf1N1B4_2739 -0.8 -1.4 acetyltransferase, GNAT family compare
Pf1N1B4_4040 -0.8 -1.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_734 -0.8 -3.1 Electron transport complex protein RnfA compare
Pf1N1B4_275 -0.8 -1.7 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_619 -0.8 -1.9 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_1461 -0.8 -2.4 Protein fixF compare
Pf1N1B4_5955 -0.7 -3.4 Permease of the major facilitator superfamily compare
Pf1N1B4_5674 -0.7 -2.8 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_65 -0.7 -4.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_51 -0.7 -2.7 hypothetical protein compare
Pf1N1B4_3656 -0.7 -1.1 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_1827 -0.7 -2.7 FIG00953482: hypothetical protein compare
Pf1N1B4_3153 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_3273 -0.7 -1.9 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_4765 -0.7 -1.5 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_763 -0.7 -2.2 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_4446 -0.7 -2.0 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_1327 -0.7 -5.1 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf1N1B4_767 -0.7 -2.9 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_4337 -0.7 -1.4 Transcriptional regulator compare
Pf1N1B4_4029 -0.7 -2.3 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3349 -0.7 -3.9 YcgN (Fragment) compare
Pf1N1B4_4035 -0.7 -1.9 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2949 -0.7 -1.7 FIG00956396: hypothetical protein compare
Pf1N1B4_4149 -0.7 -2.8 Probable lipoprotein signal peptide compare
Pf1N1B4_1629 -0.7 -1.9 FIG00958480: hypothetical protein compare
Pf1N1B4_2284 -0.7 -2.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2722 -0.7 -3.2 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) compare
Pf1N1B4_5243 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_5991 -0.7 -1.3 Transcriptional regulator, AraC family compare
Pf1N1B4_1042 -0.7 -1.9 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_2493 -0.7 -1.6 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare


Specific Phenotypes

For 1 genes in this experiment