Experiment set5IT024 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3661 -3.4 -3.3 hypothetical protein compare
Pf6N2E2_5527 -3.0 -3.5 Cold shock protein CspC compare
Pf6N2E2_3252 -2.8 -7.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3659 -2.7 -6.3 Protein fixF compare
Pf6N2E2_3839 -2.7 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2507 -2.6 -6.9 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2219 -2.6 -3.0 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3658 -2.6 -6.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4369 -2.4 -2.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4187 -2.4 -4.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2508 -2.4 -4.4 hypothetical protein compare
Pf6N2E2_3303 -2.3 -4.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3842 -2.3 -4.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3841 -2.2 -5.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2506 -2.0 -11.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_88 -2.0 -2.6 hypothetical protein compare
Pf6N2E2_2312 -2.0 -2.9 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5505 -1.9 -2.9 hypothetical protein compare
Pf6N2E2_2827 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_5155 -1.9 -3.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_546 -1.8 -2.7 FIG00966904: hypothetical protein compare
Pf6N2E2_2487 -1.8 -1.5 FIG00956090: hypothetical protein compare
Pf6N2E2_2513 -1.8 -4.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_1056 -1.8 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_70 -1.8 -4.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5316 -1.8 -1.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5646 -1.8 -2.0 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_1706 -1.7 -2.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_1450 -1.7 -2.1 FIG00960438: hypothetical protein compare
Pf6N2E2_2510 -1.7 -4.2 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3665 -1.7 -1.2 serine/threonine protein kinase compare
Pf6N2E2_3611 -1.7 -1.5 HflC protein compare
Pf6N2E2_2217 -1.7 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5671 -1.6 -2.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3260 -1.6 -4.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2373 -1.6 -3.2 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_3610 -1.6 -4.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4367 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_3791 -1.6 -7.7 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3666 -1.5 -3.6 InaA protein compare
Pf6N2E2_5727 -1.5 -4.6 FIG00955360: hypothetical protein compare
Pf6N2E2_5068 -1.5 -8.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2693 -1.5 -2.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3782 -1.5 -3.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2514 -1.5 -3.8 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5705 -1.5 -2.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5069 -1.5 -3.7 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3534 -1.4 -2.1 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5430 -1.4 -6.5 Transglycosylase, Slt family compare
Pf6N2E2_2277 -1.4 -2.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3770 -1.4 -2.4 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4159 -1.4 -3.2 Cytochrome c4 compare
Pf6N2E2_2013 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_3477 -1.3 -2.3 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3179 -1.3 -2.2 FIG021952: putative membrane protein compare
Pf6N2E2_5523 -1.3 -3.1 Small-conductance mechanosensitive channel compare
Pf6N2E2_2080 -1.3 -1.8 hypothetical protein compare
Pf6N2E2_4584 -1.3 -2.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4928 -1.3 -1.5 Permeases of the major facilitator superfamily compare
Pf6N2E2_3940 -1.3 -6.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3505 -1.3 -1.3 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4908 -1.3 -5.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5339 -1.2 -4.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3792 -1.2 -4.1 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2546 -1.2 -2.5 Carbon storage regulator compare
Pf6N2E2_5499 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_4545 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_1870 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_3255 -1.2 -3.4 YrbA protein compare
Pf6N2E2_4418 -1.2 -0.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2218 -1.2 -3.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2402 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_693 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_3612 -1.1 -2.1 HflK protein compare
Pf6N2E2_2870 -1.1 -2.6 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_5242 -1.1 -1.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2310 -1.1 -5.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3655 -1.1 -6.8 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_48 -1.1 -2.9 FIG00955661: hypothetical protein compare
Pf6N2E2_2825 -1.1 -2.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3373 -1.1 -1.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4352 -1.1 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5103 -1.1 -1.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_384 -1.1 -1.9 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5965 -1.1 -1.7 transcriptional regulator compare
Pf6N2E2_5337 -1.1 -2.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_687 -1.1 -2.4 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_4451 -1.1 -4.2 FIG139438: lipoprotein B compare
Pf6N2E2_5338 -1.1 -5.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3908 -1.1 -4.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2181 -1.1 -1.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2127 -1.1 -3.0 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3251 -1.1 -5.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3941 -1.0 -1.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4889 -1.0 -4.4 Putative transport protein compare
Pf6N2E2_2534 -1.0 -2.4 Cell division protein BolA compare
Pf6N2E2_2274 -1.0 -2.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5178 -1.0 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2317 -1.0 -2.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4204 -1.0 -1.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3060 -1.0 -2.2 Outer membrane protein H precursor compare
Pf6N2E2_3264 -1.0 -2.4 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2674 -1.0 -1.3 FIG00953856: hypothetical protein compare
Pf6N2E2_3656 -1.0 -4.2 Probable transcription regulator Mig-14 compare
Pf6N2E2_2753 -1.0 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_942 -1.0 -1.1 Mll6465 protein compare
Pf6N2E2_2527 -1.0 -2.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1797 -1.0 -2.2 Transcriptional regulator compare
Pf6N2E2_3338 -1.0 -1.6 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_4803 -0.9 -1.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2459 -0.9 -2.0 Organic hydroperoxide resistance protein compare
Pf6N2E2_3253 -0.9 -3.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5972 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_813 -0.9 -3.1 Response regulator compare
Pf6N2E2_2844 -0.9 -3.6 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_5150 -0.9 -3.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2509 -0.9 -1.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_114 -0.9 -2.2 Polysaccharide biosynthesis protein compare
Pf6N2E2_723 -0.9 -2.9 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_2413 -0.9 -1.4 FIG074102: hypothetical protein compare
Pf6N2E2_445 -0.9 -3.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_1294 -0.9 -1.1 Carbon starvation protein A compare
Pf6N2E2_959 -0.9 -2.2 putative membrane protein compare
Pf6N2E2_1626 -0.9 -4.1 Putative ATP-binding component of a transport system compare
Pf6N2E2_4611 -0.9 -2.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_664 -0.9 -1.7 Acetoin catabolism protein X compare
Pf6N2E2_1824 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_2261 -0.9 -3.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_3237 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_2311 -0.9 -4.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3062 -0.9 -2.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5739 -0.9 -0.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_5188 -0.9 -2.6 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5520 -0.9 -3.7 Sensory box histidine kinase compare
Pf6N2E2_3300 -0.9 -1.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5986 -0.9 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4427 -0.9 -1.8 FIG00954215: hypothetical protein compare
Pf6N2E2_4638 -0.9 -2.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2473 -0.9 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_3834 -0.9 -3.6 Lipoprotein NlpD compare
Pf6N2E2_3161 -0.9 -2.4 hypothetical protein compare
Pf6N2E2_2318 -0.9 -3.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4279 -0.9 -5.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_464 -0.8 -1.6 Sensory histidine kinase QseC compare
Pf6N2E2_1463 -0.8 -1.3 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_1321 -0.8 -2.1 MoaF protein precursor compare
Pf6N2E2_2201 -0.8 -2.6 Transmembrane regulator protein PrtR compare
Pf6N2E2_339 -0.8 -2.1 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_4072 -0.8 -3.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3664 -0.8 -4.7 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2264 -0.8 -2.2 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3397 -0.8 -1.5 Phage protein compare
Pf6N2E2_193 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_5156 -0.8 -1.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5006 -0.8 -4.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3786 -0.8 -1.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_5775 -0.8 -1.8 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_2440 -0.8 -1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_4825 -0.8 -4.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_6062 -0.8 -3.7 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_2313 -0.8 -1.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4188 -0.8 -2.2 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_5840 -0.8 -2.8 hypothetical protein compare
Pf6N2E2_2788 -0.8 -1.4 Transcriptional regulator, AsnC family compare
Pf6N2E2_2371 -0.8 -1.9 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_612 -0.8 -1.8 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
Pf6N2E2_1834 -0.8 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1403 -0.8 -1.9 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_855 -0.8 -1.8 Transcriptional regulator, IclR family compare
Pf6N2E2_2340 -0.8 -2.8 Transcriptional regulator, GntR family compare
Pf6N2E2_3261 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_161 -0.8 -1.3 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_5761 -0.8 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4278 -0.8 -4.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4918 -0.8 -1.9 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_4351 -0.8 -4.4 Predicted signal transduction protein compare
Pf6N2E2_5321 -0.8 -4.4 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2682 -0.7 -1.4 Transcriptional regulator, LysR family compare
Pf6N2E2_1691 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_2126 -0.7 -2.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3475 -0.7 -0.8 hypothetical protein compare
Pf6N2E2_613 -0.7 -1.0 lipoprotein, putative compare
Pf6N2E2_3074 -0.7 -1.4 FIG00960973: hypothetical protein compare
Pf6N2E2_2189 -0.7 -2.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2970 -0.7 -1.6 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_2003 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_238 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_4732 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_54 -0.7 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_5406 -0.7 -1.1 FIG00958224: hypothetical protein compare
Pf6N2E2_3847 -0.7 -1.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_1178 -0.7 -2.3 3-oxoacyl-(acyl-carrier-protein) synthase compare
Pf6N2E2_689 -0.7 -1.7 FIG00956189: hypothetical protein compare
Pf6N2E2_6090 -0.7 -1.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3461 -0.7 -1.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3783 -0.7 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5987 -0.7 -2.3 OmpA family protein compare
Pf6N2E2_4916 -0.7 -2.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3872 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_625 -0.7 -2.5 MoxR-like ATPase in aerotolerance operon compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments