Experiment set5IT024 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Gly-DL-Asp nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_05115 -3.8 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12365 -3.7 -2.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_20620 -3.4 -6.1 isopropylmalate isomerase compare
AO353_13165 -3.4 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
AO353_22945 -3.3 -10.4 glycogen branching protein compare
AO353_12085 -3.3 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12070 -3.3 -7.3 imidazoleglycerol-phosphate dehydratase compare
AO353_20695 -3.2 -5.4 O-succinylhomoserine sulfhydrylase compare
AO353_07230 -3.2 -13.0 anthranilate synthase compare
AO353_05405 -3.2 -8.3 peptide ABC transporter ATP-binding protein conserved
AO353_00310 -3.2 -6.5 transaldolase compare
AO353_12520 -3.1 -9.4 glutamate synthase compare
AO353_12075 -3.1 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20635 -3.0 -9.9 3-isopropylmalate dehydrogenase compare
AO353_05110 -3.0 -8.1 histidinol dehydrogenase compare
AO353_07210 -3.0 -4.1 indole-3-glycerol-phosphate synthase compare
AO353_07215 -2.9 -5.6 anthranilate phosphoribosyltransferase compare
AO353_08345 -2.9 -6.8 dihydroxy-acid dehydratase compare
AO353_08465 -2.9 -15.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_08185 -2.9 -7.8 methionine biosynthesis protein MetW compare
AO353_14505 -2.9 -9.5 ketol-acid reductoisomerase compare
AO353_20665 -2.9 -8.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07220 -2.9 -6.7 anthranilate synthase compare
AO353_06495 -2.9 -4.4 gamma-glutamyl phosphate reductase compare
AO353_01375 -2.9 -7.6 phosphate acyltransferase compare
AO353_12515 -2.8 -16.7 glutamate synthase compare
AO353_05375 -2.8 -11.9 peptide ABC transporter substrate-binding protein conserved
AO353_14370 -2.8 -5.0 glucose-6-phosphate isomerase compare
AO353_12150 -2.8 -5.6 histidine kinase compare
AO353_05400 -2.8 -6.7 peptide transporter conserved
AO353_20625 -2.7 -3.6 3-isopropylmalate dehydratase compare
AO353_12090 -2.7 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12345 -2.6 -1.8 twin-arginine protein translocation system subunit TatC compare
AO353_08180 -2.6 -10.5 homoserine O-acetyltransferase compare
AO353_14495 -2.5 -8.2 acetolactate synthase 3 catalytic subunit compare
AO353_08475 -2.5 -7.7 phosphoserine phosphatase compare
AO353_05410 -2.5 -10.7 peptide ABC transporter ATP-binding protein conserved
AO353_10710 -2.4 -3.3 tryptophan synthase subunit beta compare
AO353_15925 -2.4 -11.1 2-isopropylmalate synthase compare
AO353_00650 -2.4 -2.3 cytochrome biogenesis protein compare
AO353_08685 -2.4 -6.0 N-acetylglutamate synthase compare
AO353_07155 -2.4 -4.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12145 -2.3 -4.2 nitrogen regulation protein NR(I) compare
AO353_02710 -2.3 -9.2 (p)ppGpp synthetase compare
AO353_04155 -2.2 -9.3 ornithine carbamoyltransferase compare
AO353_09745 -2.2 -2.2 hypothetical protein compare
AO353_04105 -2.2 -6.0 argininosuccinate synthase compare
AO353_07445 -2.1 -1.6 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_14500 -2.1 -5.5 acetolactate synthase 3 regulatory subunit compare
AO353_22935 -2.1 -9.7 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO353_21735 -2.1 -4.9 IclR family transcriptional regulator compare
AO353_06040 -2.1 -2.8 exodeoxyribonuclease V subunit alpha compare
AO353_11340 -2.1 -2.1 MarR family transcriptional regulator compare
AO353_16450 -2.1 -9.9 protein-PII uridylyltransferase compare
AO353_09240 -2.0 -1.4 acetylglutamate kinase compare
AO353_13160 -2.0 -2.4 membrane protease HflC compare
AO353_11850 -2.0 -4.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_08015 -2.0 -5.6 5,10-methylenetetrahydrofolate reductase compare
AO353_20510 -1.9 -2.5 amidase compare
AO353_09000 -1.9 -3.8 argininosuccinate lyase compare
AO353_12115 -1.9 -2.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12420 -1.8 -2.2 predicted FeS cluster maintenance protein (from data) compare
AO353_14400 -1.8 -3.7 Fis family transcriptional regulator compare
AO353_05395 -1.8 -5.7 peptide ABC transporter permease conserved
AO353_00460 -1.8 -2.9 TetR family transcriptional regulator compare
AO353_08165 -1.7 -2.4 pyrroline-5-carboxylate reductase compare
AO353_01550 -1.7 -4.8 hypothetical protein compare
AO353_09040 -1.7 -1.8 diaminopimelate epimerase compare
AO353_02070 -1.7 -5.3 prephenate dehydratase compare
AO353_12500 -1.7 -1.6 shikimate kinase compare
AO353_02250 -1.7 -3.1 chorismate synthase compare
AO353_15250 -1.6 -2.9 cytochrome B compare
AO353_20095 -1.6 -4.2 histidine kinase compare
AO353_14115 -1.6 -5.2 gamma-glutamyl kinase compare
AO353_27650 -1.6 -3.8 cell division protein FtsK compare
AO353_06045 -1.6 -5.1 exodeoxyribonuclease V subunit beta compare
AO353_07525 -1.6 -9.3 biotin synthase compare
AO353_07515 -1.6 -1.8 transporter compare
AO353_00750 -1.5 -3.5 GntR family transcriptional regulator compare
AO353_00495 -1.5 -2.0 DNA topoisomerase I compare
AO353_10705 -1.5 -3.0 tryptophan synthase subunit alpha compare
AO353_24440 -1.5 -2.1 reactive intermediate/imine deaminase compare
AO353_10455 -1.5 -1.0 tRNA modification GTPase MnmE compare
AO353_10025 -1.5 -9.4 pyruvate carboxylase subunit B compare
AO353_24130 -1.5 -2.9 hypothetical protein compare
AO353_20660 -1.5 -3.4 pseudouridine synthase compare
AO353_24340 -1.5 -2.2 TetR family transcriptional regulator compare
AO353_23495 -1.5 -2.2 SAM-dependent methyltransferase compare
AO353_07290 -1.5 -5.9 mannose-1-phosphate guanylyltransferase compare
AO353_07075 -1.4 -3.7 elongation factor Tu compare
AO353_09560 -1.4 -1.9 type VI secretion protein compare
AO353_03360 -1.4 -5.8 glucose-6-phosphate dehydrogenase compare
AO353_18780 -1.4 -4.6 cobyrinic acid a,c-diamide synthase compare
AO353_16615 -1.4 -8.2 RNA polymerase sigma factor RpoS compare
AO353_13640 -1.4 -3.0 histidine kinase compare
AO353_11695 -1.4 -2.5 hypothetical protein compare
AO353_02975 -1.4 -2.4 aspartate kinase compare
AO353_13685 -1.4 -3.8 3-dehydroquinate dehydratase compare
AO353_02300 -1.4 -2.0 MarR family transcriptional regulator compare
AO353_01080 -1.3 -6.6 hypothetical protein compare
AO353_08045 -1.3 -8.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_11710 -1.3 -2.9 taurine dioxygenase compare
AO353_08780 -1.3 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
AO353_14150 -1.3 -1.2 peptidylprolyl isomerase compare
AO353_01190 -1.3 -1.2 hypothetical protein compare
AO353_12390 -1.3 -2.7 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_00490 -1.3 -1.8 PasA protein compare
AO353_22500 -1.3 -2.0 hypothetical protein compare
AO353_08115 -1.2 -4.2 energy transducer TonB compare
AO353_01015 -1.2 -2.3 hypothetical protein compare
AO353_28425 -1.2 -2.5 TetR family transcriptional regulator compare
AO353_14930 -1.2 -2.1 GntR family transcriptional regulator compare
AO353_09705 -1.2 -2.1 hypothetical protein compare
AO353_00835 -1.2 -4.3 transporter compare
AO353_12575 -1.2 -3.1 type II secretion system protein GspJ compare
AO353_08885 -1.2 -8.3 polyphosphate kinase compare
AO353_21465 -1.2 -2.1 cation:proton antiporter compare
AO353_14420 -1.2 -3.0 molecular chaperone DnaK compare
AO353_22810 -1.2 -1.3 hypothetical protein compare
AO353_03775 -1.2 -5.0 pyruvate kinase compare
AO353_05415 -1.2 -1.9 hypothetical protein compare
AO353_16745 -1.1 -2.0 ArsR family transcriptional regulator compare
AO353_04930 -1.1 -2.2 flavodoxin compare
AO353_05105 -1.1 -5.1 histidinol-phosphate aminotransferase compare
AO353_10035 -1.1 -5.2 LysR family transcriptional regulator compare
AO353_08350 -1.1 -4.5 hypothetical protein compare
AO353_28035 -1.1 -3.7 hypothetical protein compare
AO353_00825 -1.1 -2.5 porin compare
AO353_01350 -1.1 -3.8 4-amino-4-deoxychorismate lyase compare
AO353_06050 -1.1 -3.9 exodeoxyribonuclease V subunit gamma compare
AO353_09070 -1.1 -6.5 ammonia channel protein compare
AO353_10030 -1.1 -6.0 pyruvate carboxylase subunit A compare
AO353_13140 -1.1 -3.4 tRNA dimethylallyltransferase compare
AO353_13155 -1.1 -2.7 hypothetical protein compare
AO353_12105 -1.0 -3.6 peptidase S41 compare
AO353_04220 -1.0 -2.7 chemotaxis protein CheY compare
AO353_10445 -1.0 -1.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_22010 -1.0 -2.6 hypothetical protein compare
AO353_01780 -1.0 -5.6 heat-shock protein Hsp90 compare
AO353_26865 -1.0 -2.5 transcriptional regulator compare
AO353_02685 -1.0 -2.3 phosphoribosylglycinamide formyltransferase compare
AO353_11750 -1.0 -1.5 ATPase compare
AO353_23385 -1.0 -4.0 trans-2-enoyl-CoA reductase compare
AO353_00620 -1.0 -1.6 cytochrome C oxidase Cbb3 compare
AO353_03420 -1.0 -2.7 phosphogluconate dehydratase compare
AO353_04230 -1.0 -2.4 chemotaxis protein CheW compare
AO353_20810 -1.0 -1.7 hypothetical protein compare
AO353_01035 -1.0 -2.4 hypothetical protein compare
AO353_20170 -1.0 -3.1 trigger factor compare
AO353_15385 -1.0 -1.2 hypothetical protein compare
AO353_20200 -1.0 -2.4 peptidylprolyl isomerase compare
AO353_03415 -1.0 -3.4 glucokinase compare
AO353_28110 -1.0 -3.3 TetR family transcriptional regulator compare
AO353_26285 -1.0 -1.8 hypothetical protein compare
AO353_15260 -1.0 -3.5 stringent starvation protein A compare
AO353_22615 -1.0 -2.8 hypothetical protein compare
AO353_05420 -1.0 -1.1 peptide chain release factor 3 compare
AO353_19830 -0.9 -2.9 hypothetical protein compare
AO353_26645 -0.9 -2.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_27690 -0.9 -5.0 isocitrate dehydrogenase compare
AO353_12240 -0.9 -2.8 histidine utilization repressor compare
AO353_25955 -0.9 -2.1 NIPSNAP family containing protein compare
AO353_12080 -0.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_25945 -0.9 -2.4 hypothetical protein compare
AO353_20340 -0.9 -2.3 gamma-carboxygeranoyl-CoA hydratase compare
AO353_12360 -0.9 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_04175 -0.9 -2.7 glycerol uptake facilitator GlpF compare
AO353_19530 -0.9 -1.2 quinohemoprotein amine dehydrogenase compare
AO353_21630 -0.9 -1.9 precorrin-4 C11-methyltransferase compare
AO353_23955 -0.9 -2.3 RND transporter compare
AO353_20175 -0.9 -1.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_03035 -0.9 -2.8 AraC family transcriptional regulator compare
AO353_08855 -0.9 -2.8 GntR family transcriptional regulator compare
AO353_10670 -0.9 -3.9 shikimate dehydrogenase compare
AO353_19500 -0.9 -2.3 peptidase S8 and S53 subtilisin kexin sedolisin compare
AO353_13070 -0.9 -3.8 phosphoserine phosphatase compare
AO353_07520 -0.9 -5.6 8-amino-7-oxononanoate synthase compare
AO353_07325 -0.9 -1.2 diadenosine tetraphosphatase compare
AO353_05195 -0.9 -4.7 glmZ(sRNA)-inactivating NTPase compare
AO353_12245 -0.9 -1.6 hypothetical protein compare
AO353_10495 -0.9 -2.1 serine hydroxymethyltransferase compare
AO353_14405 -0.9 -5.7 ATPase compare
AO353_23440 -0.9 -1.3 hypothetical protein compare
AO353_24280 -0.9 -3.1 amino acid-binding protein compare
AO353_14990 -0.9 -1.3 hypothetical protein compare
AO353_21350 -0.9 -2.3 methylmalonate-semialdehyde dehydrogenase compare
AO353_16040 -0.9 -1.0 hypothetical protein compare
AO353_17205 -0.9 -1.8 beta-ketoadipyl CoA thiolase compare
AO353_01355 -0.9 -3.8 3-oxoacyl-ACP synthase compare
AO353_00515 -0.9 -1.6 hypothetical protein compare
AO353_09890 -0.9 -2.5 phosphate ABC transporter ATP-binding protein compare
AO353_02885 -0.8 -1.7 flagellar biosynthesis protein FlgN compare
AO353_24350 -0.8 -3.2 osmotically inducible protein C compare
AO353_12045 -0.8 -3.0 iron transporter compare
AO353_03580 -0.8 -1.9 ATP-dependent DNA helicase RuvB compare
AO353_04810 -0.8 -1.2 hypothetical protein compare
AO353_22475 -0.8 -2.1 alkaline phosphatase compare
AO353_03545 -0.8 -4.2 hypothetical protein compare
AO353_06325 -0.8 -2.2 hypothetical protein compare
AO353_25450 -0.8 -1.5 cyanate hydratase compare


Specific Phenotypes

For 15 genes in this experiment

For nitrogen source Gly-DL-Asp in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Gly-DL-Asp across organisms