Experiment set5IT022 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Potassium tellurite hydrate 0.005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3264 -4.8 -4.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3303 -3.1 -4.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2219 -3.1 -2.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3782 -3.0 -4.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3841 -2.8 -6.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3261 -2.8 -5.6 hypothetical protein compare
Pf6N2E2_3260 -2.8 -5.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3257 -2.8 -3.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5014 -2.8 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3839 -2.8 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2261 -2.7 -6.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_5178 -2.6 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5727 -2.5 -7.7 FIG00955360: hypothetical protein compare
Pf6N2E2_3661 -2.5 -5.0 hypothetical protein compare
Pf6N2E2_4187 -2.4 -4.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3252 -2.3 -5.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3842 -2.2 -3.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5523 -2.1 -5.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_3258 -2.1 -4.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2181 -2.1 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2574 -2.0 -2.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_3656 -2.0 -7.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_3253 -2.0 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4369 -2.0 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5069 -1.9 -5.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4743 -1.9 -1.3 hypothetical protein compare
Pf6N2E2_5156 -1.9 -1.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3658 -1.9 -6.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2218 -1.9 -4.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_6099 -1.8 -1.8 tRNA-Glu-TTC compare
Pf6N2E2_144 -1.8 -13.0 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3516 -1.8 -3.3 Probable transmembrane protein compare
Pf6N2E2_70 -1.8 -2.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2312 -1.8 -2.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_145 -1.7 -6.1 putative exported protein compare
Pf6N2E2_5527 -1.7 -2.5 Cold shock protein CspC compare
Pf6N2E2_3666 -1.7 -3.0 InaA protein compare
Pf6N2E2_2473 -1.7 -1.8 Major outer membrane lipoprotein I compare
Pf6N2E2_5068 -1.7 -9.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3659 -1.7 -5.1 Protein fixF compare
Pf6N2E2_2274 -1.7 -5.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5536 -1.6 -2.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5242 -1.6 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2217 -1.6 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2127 -1.6 -4.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3505 -1.5 -1.8 Translation initiation factor SUI1-related protein compare
Pf6N2E2_339 -1.5 -2.7 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_4993 -1.5 -2.9 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3834 -1.5 -5.4 Lipoprotein NlpD compare
Pf6N2E2_2755 -1.4 -1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3251 -1.4 -7.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_127 -1.4 -1.8 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5338 -1.4 -5.9 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_1162 -1.4 -2.1 Transmembrane amino acid efflux protein compare
Pf6N2E2_1694 -1.4 -1.6 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2714 -1.3 -2.1 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_2508 -1.3 -3.4 hypothetical protein compare
Pf6N2E2_3833 -1.3 -3.4 hypothetical protein compare
Pf6N2E2_5671 -1.3 -2.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_5337 -1.3 -3.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5339 -1.3 -5.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4276 -1.3 -4.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2869 -1.3 -1.7 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2320 -1.3 -2.4 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2646 -1.3 -1.8 FIG00953416: hypothetical protein compare
Pf6N2E2_2549 -1.3 -1.8 hypothetical protein compare
Pf6N2E2_4352 -1.3 -2.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_942 -1.3 -1.9 Mll6465 protein compare
Pf6N2E2_3941 -1.3 -1.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5986 -1.2 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2313 -1.2 -3.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2507 -1.2 -3.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3060 -1.2 -3.1 Outer membrane protein H precursor compare
Pf6N2E2_2311 -1.2 -5.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2825 -1.2 -3.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4889 -1.2 -4.1 Putative transport protein compare
Pf6N2E2_5455 -1.2 -2.3 hypothetical protein compare
Pf6N2E2_3017 -1.2 -3.3 hypothetical protein compare
Pf6N2E2_6058 -1.2 -3.5 FIG139976: hypothetical protein compare
Pf6N2E2_3074 -1.2 -2.0 FIG00960973: hypothetical protein compare
Pf6N2E2_3349 -1.2 -2.3 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3373 -1.1 -1.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4974 -1.1 -5.9 DedA protein compare
Pf6N2E2_3612 -1.1 -2.1 HflK protein compare
Pf6N2E2_6057 -1.1 -2.2 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3461 -1.1 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5945 -1.1 -3.4 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf6N2E2_3610 -1.1 -3.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3940 -1.1 -5.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2111 -1.1 -2.8 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_2318 -1.1 -5.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5219 -1.1 -6.0 FIG140336: TPR domain protein compare
Pf6N2E2_5406 -1.1 -2.2 FIG00958224: hypothetical protein compare
Pf6N2E2_3664 -1.1 -5.1 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_3607 -1.1 -5.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5993 -1.1 -1.7 FIG00957412: hypothetical protein compare
Pf6N2E2_4279 -1.1 -7.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3792 -1.1 -4.3 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5316 -1.1 -1.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2317 -1.1 -3.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2340 -1.1 -3.6 Transcriptional regulator, GntR family compare
Pf6N2E2_5780 -1.1 -5.9 Periplasmic protease compare
Pf6N2E2_1056 -1.0 -0.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4908 -1.0 -4.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1886 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_4638 -1.0 -2.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2193 -1.0 -4.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_2506 -1.0 -6.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3835 -1.0 -2.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3847 -1.0 -2.5 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2552 -1.0 -3.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5705 -1.0 -1.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4075 -1.0 -3.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3655 -1.0 -6.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_5761 -1.0 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_170 -1.0 -1.6 lipoprotein, putative compare
Pf6N2E2_3783 -1.0 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2080 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_4451 -0.9 -3.3 FIG139438: lipoprotein B compare
Pf6N2E2_6090 -0.9 -1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_2310 -0.9 -5.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4204 -0.9 -1.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2824 -0.9 -5.4 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2688 -0.9 -2.3 YD repeat protein compare
Pf6N2E2_5430 -0.9 -4.2 Transglycosylase, Slt family compare
Pf6N2E2_5150 -0.9 -3.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2189 -0.9 -2.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_282 -0.9 -1.4 GNAT family acetyltransferase YjcF compare
Pf6N2E2_2138 -0.9 -2.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2674 -0.9 -1.2 FIG00953856: hypothetical protein compare
Pf6N2E2_3885 -0.9 -1.6 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4072 -0.9 -3.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2114 -0.9 -2.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2514 -0.9 -2.7 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2064 -0.9 -2.9 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3499 -0.9 -2.3 Permeases of the major facilitator superfamily compare
Pf6N2E2_3786 -0.9 -2.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_3791 -0.9 -4.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_686 -0.9 -3.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3617 -0.9 -2.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1545 -0.9 -2.2 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5092 -0.9 -4.3 FIG00953225: hypothetical protein compare
Pf6N2E2_4159 -0.8 -2.2 Cytochrome c4 compare
Pf6N2E2_2428 -0.8 -2.0 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_3271 -0.8 -2.0 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2264 -0.8 -2.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1735 -0.8 -1.9 PhnB protein compare
Pf6N2E2_3351 -0.8 -2.8 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_648 -0.8 -1.5 General secretion pathway protein K compare
Pf6N2E2_600 -0.8 -2.2 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_2973 -0.8 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2513 -0.8 -2.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_746 -0.8 -1.4 FIG00958097: hypothetical protein compare
Pf6N2E2_3521 -0.8 -3.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_2510 -0.8 -2.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_1279 -0.8 -1.4 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_1464 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_5906 -0.8 -2.0 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_5103 -0.8 -1.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_719 -0.8 -2.1 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_1463 -0.8 -1.4 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_367 -0.8 -1.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2282 -0.8 -2.1 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_40 -0.8 -3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2675 -0.8 -1.0 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5976 -0.8 -3.1 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf6N2E2_1499 -0.8 -1.2 ABC transporter amino acid-binding protein compare
Pf6N2E2_5571 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_1917 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_623 -0.8 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_3100 -0.8 -1.5 FIG00953063: hypothetical protein compare
Pf6N2E2_1043 -0.8 -2.6 Transcriptional regulator, IclR family compare
Pf6N2E2_4948 -0.8 -5.4 Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1 compare
Pf6N2E2_4071 -0.8 -2.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1248 -0.8 -1.5 MutT/nudix family protein compare
Pf6N2E2_1313 -0.7 -1.7 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) compare
Pf6N2E2_3004 -0.7 -2.1 Prophage baseplate assembly protein V compare
Pf6N2E2_2285 -0.7 -0.8 FIG00954079: hypothetical protein compare
Pf6N2E2_3191 -0.7 -2.5 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_2941 -0.7 -3.2 Esterase A compare
Pf6N2E2_2823 -0.7 -2.5 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5340 -0.7 -2.2 Stringent starvation protein A compare
Pf6N2E2_2509 -0.7 -1.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3698 -0.7 -1.8 Nicotinamidase family protein YcaC compare
Pf6N2E2_5342 -0.7 -1.4 21 kDa hemolysin precursor compare
Pf6N2E2_4534 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_3702 -0.7 -1.0 FIG00953907: hypothetical protein compare
Pf6N2E2_4579 -0.7 -1.4 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5006 -0.7 -3.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2258 -0.7 -4.1 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2180 -0.7 -1.8 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_350 -0.7 -1.6 Gfa-like protein compare
Pf6N2E2_1034 -0.7 -0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4372 -0.7 -2.7 FIG00460773: hypothetical protein compare
Pf6N2E2_4945 -0.7 -3.7 FIG00955711: hypothetical protein compare
Pf6N2E2_5640 -0.7 -1.5 FIG00955597: hypothetical protein compare
Pf6N2E2_2402 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_4205 -0.7 -2.2 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3591 -0.7 -2.5 NUDIX hydrolase compare
Pf6N2E2_2371 -0.7 -1.8 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Potassium tellurite hydrate across organisms