Experiment set5IT022 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -5.0 -7.6 O-succinylhomoserine sulfhydrylase compare
AO353_07515 -4.8 -3.3 transporter compare
AO353_05115 -4.6 -12.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20625 -4.5 -5.4 3-isopropylmalate dehydratase compare
AO353_12085 -4.4 -10.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_02070 -4.3 -8.3 prephenate dehydratase compare
AO353_20665 -4.3 -13.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07210 -4.3 -6.5 indole-3-glycerol-phosphate synthase compare
AO353_13070 -4.3 -11.3 phosphoserine phosphatase compare
AO353_07220 -4.3 -10.3 anthranilate synthase compare
AO353_10670 -4.2 -9.4 shikimate dehydrogenase compare
AO353_20635 -4.2 -16.1 3-isopropylmalate dehydrogenase compare
AO353_07230 -4.1 -20.3 anthranilate synthase compare
AO353_12090 -4.0 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12070 -4.0 -11.4 imidazoleglycerol-phosphate dehydratase compare
AO353_14505 -4.0 -15.3 ketol-acid reductoisomerase compare
AO353_05110 -3.9 -13.5 histidinol dehydrogenase compare
AO353_08185 -3.9 -12.7 methionine biosynthesis protein MetW compare
AO353_13165 -3.9 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_00310 -3.8 -13.1 transaldolase compare
AO353_12500 -3.8 -2.6 shikimate kinase compare
AO353_12515 -3.8 -24.5 glutamate synthase compare
AO353_08180 -3.8 -15.7 homoserine O-acetyltransferase compare
AO353_10025 -3.7 -18.5 pyruvate carboxylase subunit B compare
AO353_09285 -3.7 -14.0 reactive intermediate/imine deaminase compare
AO353_07510 -3.7 -12.9 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_20540 -3.7 -10.0 aromatic amino acid aminotransferase compare
AO353_08475 -3.7 -11.7 phosphoserine phosphatase compare
AO353_02710 -3.6 -14.8 (p)ppGpp synthetase compare
AO353_07520 -3.6 -17.0 8-amino-7-oxononanoate synthase compare
AO353_12520 -3.6 -12.7 glutamate synthase compare
AO353_14495 -3.6 -14.3 acetolactate synthase 3 catalytic subunit compare
AO353_02075 -3.6 -14.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20620 -3.6 -7.3 isopropylmalate isomerase compare
AO353_12360 -3.6 -11.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_12365 -3.6 -5.8 phosphoribosyl-AMP cyclohydrolase compare
AO353_08045 -3.6 -18.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07505 -3.5 -12.1 dethiobiotin synthetase compare
AO353_08685 -3.5 -9.4 N-acetylglutamate synthase compare
AO353_04155 -3.5 -14.6 ornithine carbamoyltransferase compare
AO353_08345 -3.5 -11.7 dihydroxy-acid dehydratase compare
AO353_03360 -3.5 -11.3 glucose-6-phosphate dehydrogenase compare
AO353_07525 -3.4 -15.7 biotin synthase compare
AO353_10030 -3.4 -13.3 pyruvate carboxylase subunit A compare
AO353_16940 -3.4 -7.2 deoxycytidine triphosphate deaminase compare
AO353_12075 -3.3 -10.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07215 -3.3 -8.8 anthranilate phosphoribosyltransferase compare
AO353_04105 -3.2 -11.0 argininosuccinate synthase compare
AO353_08780 -3.2 -9.8 5-formyltetrahydrofolate cyclo-ligase compare
AO353_02975 -3.0 -4.8 aspartate kinase compare
AO353_07155 -3.0 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_08165 -3.0 -4.5 pyrroline-5-carboxylate reductase compare
AO353_14595 -3.0 -10.6 carbonate dehydratase compare
AO353_08015 -2.9 -10.0 5,10-methylenetetrahydrofolate reductase compare
AO353_09240 -2.9 -3.5 acetylglutamate kinase compare
AO353_14400 -2.9 -5.8 Fis family transcriptional regulator compare
AO353_01375 -2.9 -8.6 phosphate acyltransferase compare
AO353_09000 -2.9 -7.2 argininosuccinate lyase compare
AO353_10710 -2.9 -6.7 tryptophan synthase subunit beta compare
AO353_00825 -2.9 -5.7 porin compare
AO353_14115 -2.9 -8.3 gamma-glutamyl kinase compare
AO353_15925 -2.7 -10.7 2-isopropylmalate synthase compare
AO353_22800 -2.7 -5.0 sulfite reductase compare
AO353_14500 -2.7 -7.0 acetolactate synthase 3 regulatory subunit compare
AO353_10035 -2.7 -7.5 LysR family transcriptional regulator compare
AO353_07355 -2.6 -8.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_21625 -2.6 -4.1 Fe/S biogenesis protein NfuA compare
AO353_06495 -2.6 -6.0 gamma-glutamyl phosphate reductase compare
AO353_19060 -2.5 -7.3 CysB family transcriptional regulator compare
AO353_03020 -2.5 -8.4 arginine N-succinyltransferase compare
AO353_05105 -2.4 -12.4 histidinol-phosphate aminotransferase compare
AO353_07315 -2.4 -3.3 rRNA methyltransferase compare
AO353_27650 -2.3 -6.4 cell division protein FtsK compare
AO353_12145 -2.3 -6.2 nitrogen regulation protein NR(I) compare
AO353_03580 -2.2 -4.9 ATP-dependent DNA helicase RuvB compare
AO353_08510 -2.2 -5.2 3-phosphoglycerate dehydrogenase compare
AO353_13100 -2.2 -2.5 GTPase RsgA compare
AO353_06040 -2.2 -5.0 exodeoxyribonuclease V subunit alpha compare
AO353_03420 -2.2 -6.3 phosphogluconate dehydratase compare
AO353_14150 -2.2 -2.5 peptidylprolyl isomerase compare
AO353_03615 -2.1 -4.5 cold-shock protein compare
AO353_14775 -2.1 -7.9 hypothetical protein compare
AO353_08885 -2.0 -13.6 polyphosphate kinase compare
AO353_05520 -2.0 -5.1 nicotinate-nucleotide pyrophosphorylase compare
AO353_13610 -2.0 -3.7 precorrin isomerase compare
AO353_02250 -1.9 -3.0 chorismate synthase compare
AO353_10705 -1.9 -4.4 tryptophan synthase subunit alpha compare
AO353_02685 -1.9 -4.1 phosphoribosylglycinamide formyltransferase compare
AO353_25210 -1.9 -9.4 D-serine ammonia-lyase (EC 4.3.1.18) (from data) conserved
AO353_06045 -1.9 -8.1 exodeoxyribonuclease V subunit beta compare
AO353_03415 -1.8 -7.1 glucokinase compare
AO353_03525 -1.8 -8.7 quinolinate synthase A compare
AO353_12115 -1.8 -3.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13640 -1.7 -5.2 histidine kinase compare
AO353_04325 -1.7 -3.4 hypothetical protein compare
AO353_05690 -1.7 -4.0 SsrA-binding protein compare
AO353_06050 -1.7 -7.6 exodeoxyribonuclease V subunit gamma compare
AO353_02720 -1.7 -5.2 cysteine synthase compare
AO353_02060 -1.7 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_11850 -1.7 -5.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_09250 -1.6 -3.2 exodeoxyribonuclease III compare
AO353_06320 -1.6 -3.7 AsnC family transcriptional regulator compare
AO353_04055 -1.6 -2.9 methionine--tRNA ligase compare
AO353_03590 -1.6 -3.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_04365 -1.5 -5.4 recombinase XerD compare
AO353_14420 -1.5 -4.2 molecular chaperone DnaK compare
AO353_04565 -1.5 -6.0 nucleoid-associated protein compare
AO353_09745 -1.5 -1.9 hypothetical protein compare
AO353_02220 -1.4 -2.1 hypothetical protein compare
AO353_00490 -1.4 -3.6 PasA protein compare
AO353_21665 -1.4 -5.7 magnesium chelatase compare
AO353_07075 -1.4 -3.8 elongation factor Tu compare
AO353_03795 -1.4 -4.0 fumarate hydratase compare
AO353_10430 -1.4 -3.6 chromosome partitioning protein ParB compare
AO353_18540 -1.4 -2.7 pseudouridine synthase compare
AO353_12105 -1.4 -5.1 peptidase S41 compare
AO353_19145 -1.3 -3.9 protease HtpX compare
AO353_13605 -1.3 -6.6 oxidoreductase compare
AO353_08265 -1.3 -4.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_00495 -1.2 -1.7 DNA topoisomerase I compare
AO353_11165 -1.2 -6.9 hypothetical protein compare
AO353_07250 -1.2 -2.7 polyamine ABC transporter permease compare
AO353_25215 -1.2 -5.3 transcriptional regulator conserved
AO353_04355 -1.2 -2.2 homoserine dehydrogenase compare
AO353_13140 -1.2 -4.6 tRNA dimethylallyltransferase compare
AO353_15170 -1.2 -2.4 cytochrome D ubiquinol oxidase subunit III compare
AO353_05125 -1.2 -3.6 BolA family transcriptional regulator compare
AO353_10495 -1.2 -2.7 serine hydroxymethyltransferase compare
AO353_03015 -1.1 -4.4 arginine N-succinyltransferase compare
AO353_20170 -1.1 -4.1 trigger factor compare
AO353_21630 -1.1 -2.2 precorrin-4 C11-methyltransferase compare
AO353_09890 -1.1 -3.7 phosphate ABC transporter ATP-binding protein compare
AO353_03670 -1.1 -3.3 ornithine acetyltransferase compare
AO353_10435 -1.1 -6.1 chromosome partitioning protein compare
AO353_02605 -1.1 -5.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_10985 -1.1 -2.3 hypothetical protein compare
AO353_00515 -1.1 -3.4 hypothetical protein compare
AO353_10445 -1.1 -1.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_16210 -1.0 -7.2 XRE family transcriptional regulator compare
AO353_13600 -1.0 -3.5 precorrin-6Y C5,15-methyltransferase compare
AO353_16805 -1.0 -4.8 recombinase RecA compare
AO353_17620 -1.0 -8.2 L-aspartate oxidase compare
AO353_08465 -1.0 -7.8 phosphoenolpyruvate-protein phosphotransferase compare
AO353_18285 -1.0 -2.1 3-phosphoglycerate kinase compare
AO353_19770 -1.0 -1.7 peptidase compare
AO353_02635 -1.0 -5.4 cobyrinic acid a,c-diamide synthase compare
AO353_18560 -1.0 -1.9 class I peptide chain release factor compare
AO353_02640 -1.0 -1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_13620 -1.0 -6.5 precorrin-3B C17-methyltransferase compare
AO353_22500 -1.0 -1.6 hypothetical protein compare
AO353_00650 -1.0 -2.1 cytochrome biogenesis protein compare
AO353_02625 -1.0 -6.2 cobalamin biosynthesis protein CobD compare
AO353_01410 -1.0 -2.9 ribonuclease E compare
AO353_12150 -1.0 -2.7 histidine kinase compare
AO353_08470 -1.0 -3.4 RNA pyrophosphohydrolase compare
AO353_10055 -1.0 -6.4 DNA helicase II compare
AO353_02600 -0.9 -2.1 alpha-ribazole phosphatase compare
AO353_20630 -0.9 -4.5 SAM-dependent methyltransferase compare
AO353_13615 -0.9 -6.7 precorrin-2 C20-methyltransferase compare
AO353_29215 -0.9 -2.2 alpha/beta hydrolase compare
AO353_13225 -0.9 -2.7 50S ribosomal protein L9 compare
AO353_12880 -0.9 -2.3 ADP-heptose--LPS heptosyltransferase compare
AO353_00750 -0.9 -3.6 GntR family transcriptional regulator compare
AO353_06710 -0.9 -1.6 riboflavin synthase subunit alpha compare
AO353_21615 -0.9 -6.2 methionine synthase compare
AO353_11530 -0.9 -4.7 diguanylate cyclase compare
AO353_21465 -0.9 -2.7 cation:proton antiporter compare
AO353_09915 -0.9 -3.7 long-chain acyl-CoA thioester hydrolase compare
AO353_21660 -0.9 -5.9 cobalamin biosynthesis protein CobN compare
AO353_20340 -0.9 -3.1 gamma-carboxygeranoyl-CoA hydratase compare
AO353_08880 -0.9 -1.9 exopolyphosphatase compare
AO353_24550 -0.9 -2.6 hypothetical protein compare
AO353_15555 -0.9 -3.3 fumarylacetoacetase compare
AO353_18840 -0.9 -2.8 flagellar biosynthesis protein FlhB compare
AO353_09050 -0.9 -2.5 recombinase XerC compare
AO353_01780 -0.8 -5.6 heat-shock protein Hsp90 compare
AO353_04500 -0.8 -1.6 DNA repair protein RecO compare
AO353_20660 -0.8 -2.8 pseudouridine synthase compare
AO353_02610 -0.8 -4.2 adenosylcobinamide kinase compare
AO353_02715 -0.8 -2.3 23S rRNA methyltransferase compare
AO353_25355 -0.8 -1.5 hypothetical protein compare
AO353_02810 -0.8 -4.4 histidine kinase compare
AO353_16440 -0.8 -1.7 ArsC family transcriptional regulator compare
AO353_04520 -0.8 -2.8 elongation factor 4 compare
AO353_02940 -0.8 -2.7 DNA-binding protein compare
AO353_25320 -0.8 -2.6 phosphoribosyl-dephospho-CoA transferase compare
AO353_03605 -0.8 -1.2 FmdB family transcriptional regulator compare
AO353_13245 -0.8 -4.0 hypothetical protein compare
AO353_16450 -0.8 -5.3 protein-PII uridylyltransferase compare
AO353_03585 -0.8 -1.6 ATP-dependent DNA helicase RuvA compare
AO353_19360 -0.8 -1.5 peroxiredoxin compare
AO353_09320 -0.8 -4.5 ATP-dependent DNA helicase RecG compare
AO353_15725 -0.8 -2.0 hypothetical protein compare
AO353_02615 -0.8 -4.2 cobyric acid synthase compare
AO353_13715 -0.7 -1.9 translation initiation factor Sui1 compare
AO353_23945 -0.7 -1.7 hypothetical protein compare
AO353_08620 -0.7 -1.4 hypothetical protein compare
AO353_03775 -0.7 -4.6 pyruvate kinase compare
AO353_13080 -0.7 -4.2 thiosulfate sulfurtransferase compare
AO353_16530 -0.7 -1.1 ribonuclease HII compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source D-Serine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source D-Serine across organisms