Experiment set5IT021 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Tryptophan nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -5.1 -7.0 O-succinylhomoserine sulfhydrylase compare
AO353_20625 -5.1 -3.5 3-isopropylmalate dehydratase compare
AO353_02070 -5.1 -3.5 prephenate dehydratase compare
AO353_13070 -4.9 -8.9 phosphoserine phosphatase compare
AO353_02075 -4.8 -10.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_05115 -4.7 -11.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13165 -4.7 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12070 -4.7 -9.0 imidazoleglycerol-phosphate dehydratase compare
AO353_08185 -4.6 -10.6 methionine biosynthesis protein MetW compare
AO353_12085 -4.5 -9.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20635 -4.4 -15.5 3-isopropylmalate dehydrogenase compare
AO353_12145 -4.3 -4.2 nitrogen regulation protein NR(I) compare
AO353_12150 -4.3 -7.7 histidine kinase compare
AO353_20540 -4.2 -9.7 aromatic amino acid aminotransferase compare
AO353_14505 -4.2 -14.6 ketol-acid reductoisomerase compare
AO353_08475 -4.2 -11.7 phosphoserine phosphatase compare
AO353_00310 -4.1 -12.4 transaldolase compare
AO353_08345 -4.1 -10.8 dihydroxy-acid dehydratase compare
AO353_12090 -4.0 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12520 -4.0 -14.2 glutamate synthase compare
AO353_12515 -4.0 -24.6 glutamate synthase compare
AO353_12365 -3.9 -5.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_24130 -3.9 -5.5 hypothetical protein compare
AO353_08180 -3.9 -15.5 homoserine O-acetyltransferase compare
AO353_12500 -3.8 -2.6 shikimate kinase compare
AO353_02710 -3.7 -14.7 (p)ppGpp synthetase compare
AO353_09155 -3.7 -11.3 amino acid dehydrogenase compare
AO353_12075 -3.7 -10.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12360 -3.6 -11.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_20620 -3.6 -7.0 isopropylmalate isomerase compare
AO353_10030 -3.5 -14.0 pyruvate carboxylase subunit A compare
AO353_14495 -3.5 -14.3 acetolactate synthase 3 catalytic subunit compare
AO353_10035 -3.4 -12.1 LysR family transcriptional regulator compare
AO353_04155 -3.4 -15.2 ornithine carbamoyltransferase compare
AO353_04105 -3.4 -10.8 argininosuccinate synthase compare
AO353_13160 -3.4 -4.0 membrane protease HflC compare
AO353_08165 -3.4 -4.0 pyrroline-5-carboxylate reductase compare
AO353_08685 -3.3 -9.7 N-acetylglutamate synthase compare
AO353_14500 -3.3 -9.1 acetolactate synthase 3 regulatory subunit compare
AO353_05970 -3.3 -7.7 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) conserved
AO353_05975 -3.2 -11.1 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
AO353_05110 -3.2 -12.2 histidinol dehydrogenase compare
AO353_05935 -3.2 -15.3 Kynureninase (EC 3.7.1.3) (from data) conserved
AO353_09240 -3.1 -3.0 acetylglutamate kinase compare
AO353_10025 -3.1 -16.0 pyruvate carboxylase subunit B compare
AO353_10670 -3.1 -8.2 shikimate dehydrogenase compare
AO353_14115 -3.1 -9.1 gamma-glutamyl kinase compare
AO353_07525 -3.0 -16.4 biotin synthase compare
AO353_07155 -3.0 -8.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_16450 -3.0 -13.4 protein-PII uridylyltransferase compare
AO353_22945 -3.0 -15.0 glycogen branching protein compare
AO353_08015 -3.0 -10.0 5,10-methylenetetrahydrofolate reductase compare
AO353_00495 -2.9 -3.9 DNA topoisomerase I compare
AO353_15925 -2.9 -11.0 2-isopropylmalate synthase compare
AO353_14400 -2.9 -6.3 Fis family transcriptional regulator compare
AO353_03360 -2.9 -11.0 glucose-6-phosphate dehydrogenase compare
AO353_05945 -2.8 -9.8 AraC family transcriptional regulator compare
AO353_01375 -2.7 -9.2 phosphate acyltransferase compare
AO353_09000 -2.7 -7.2 argininosuccinate lyase compare
AO353_03020 -2.7 -9.1 arginine N-succinyltransferase compare
AO353_06495 -2.7 -5.7 gamma-glutamyl phosphate reductase compare
AO353_13100 -2.6 -2.5 GTPase RsgA compare
AO353_05950 -2.6 -15.7 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) compare
AO353_08510 -2.6 -6.8 3-phosphoglycerate dehydrogenase compare
AO353_27650 -2.6 -6.5 cell division protein FtsK compare
AO353_13155 -2.6 -5.9 hypothetical protein compare
AO353_14220 -2.6 -2.6 ribosomal large subunit pseudouridine synthase D compare
AO353_22800 -2.5 -4.9 sulfite reductase compare
AO353_05955 -2.5 -8.8 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) compare
AO353_05690 -2.5 -5.1 SsrA-binding protein compare
AO353_13640 -2.5 -6.0 histidine kinase compare
AO353_23495 -2.4 -2.6 SAM-dependent methyltransferase compare
AO353_05105 -2.3 -10.5 histidinol-phosphate aminotransferase compare
AO353_05940 -2.3 -7.6 AsnC family transcriptional regulator conserved
AO353_16940 -2.3 -6.7 deoxycytidine triphosphate deaminase compare
AO353_12115 -2.3 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03590 -2.3 -4.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_07645 -2.2 -2.3 sarcosine oxidase subunit gamma compare
AO353_05960 -2.2 -12.4 anthranilate dioxygenase reductase compare
AO353_08885 -2.2 -13.5 polyphosphate kinase compare
AO353_06050 -2.2 -8.8 exodeoxyribonuclease V subunit gamma compare
AO353_00825 -2.2 -5.3 porin compare
AO353_02720 -2.2 -6.9 cysteine synthase compare
AO353_03580 -2.2 -4.3 ATP-dependent DNA helicase RuvB compare
AO353_08780 -2.1 -7.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_14420 -2.1 -5.3 molecular chaperone DnaK compare
AO353_02600 -2.0 -4.2 alpha-ribazole phosphatase compare
AO353_11850 -2.0 -5.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_09285 -2.0 -9.5 reactive intermediate/imine deaminase compare
AO353_02250 -1.9 -3.4 chorismate synthase compare
AO353_07515 -1.9 -2.5 transporter compare
AO353_09030 -1.9 -2.3 iron donor protein CyaY compare
AO353_07510 -1.9 -9.7 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_03585 -1.9 -3.5 ATP-dependent DNA helicase RuvA compare
AO353_02975 -1.9 -4.2 aspartate kinase compare
AO353_07520 -1.9 -11.0 8-amino-7-oxononanoate synthase compare
AO353_07075 -1.8 -4.7 elongation factor Tu compare
AO353_06040 -1.8 -3.3 exodeoxyribonuclease V subunit alpha compare
AO353_08045 -1.8 -11.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_01410 -1.8 -3.9 ribonuclease E compare
AO353_08265 -1.7 -6.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_18540 -1.7 -3.2 pseudouridine synthase compare
AO353_20175 -1.6 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_01080 -1.6 -8.6 hypothetical protein compare
AO353_09160 -1.6 -8.2 AsnC family transcriptional regulator compare
AO353_14150 -1.6 -2.2 peptidylprolyl isomerase compare
AO353_06045 -1.6 -7.0 exodeoxyribonuclease V subunit beta compare
AO353_19145 -1.6 -3.7 protease HtpX compare
AO353_07505 -1.6 -6.0 dethiobiotin synthetase compare
AO353_08470 -1.6 -4.1 RNA pyrophosphohydrolase compare
AO353_09070 -1.6 -9.3 ammonia channel protein compare
AO353_07355 -1.5 -6.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_11165 -1.5 -7.5 hypothetical protein compare
AO353_14595 -1.5 -7.2 carbonate dehydratase compare
AO353_05930 -1.5 -10.2 L-tryptophan transporter (from data) compare
AO353_21355 -1.4 -3.1 xylose isomerase compare
AO353_20170 -1.4 -5.1 trigger factor compare
AO353_06540 -1.4 -2.7 hypothetical protein compare
AO353_04365 -1.4 -5.3 recombinase XerD compare
AO353_04355 -1.4 -2.3 homoserine dehydrogenase compare
AO353_19530 -1.3 -2.4 quinohemoprotein amine dehydrogenase compare
AO353_07315 -1.3 -2.5 rRNA methyltransferase compare
AO353_12650 -1.3 -1.4 hypothetical protein compare
AO353_05965 -1.3 -9.2 aromatic amino acid transporter compare
AO353_04220 -1.3 -4.3 chemotaxis protein CheY compare
AO353_12240 -1.2 -4.5 histidine utilization repressor compare
AO353_03615 -1.2 -2.3 cold-shock protein compare
AO353_03520 -1.2 -2.9 hypothetical protein compare
AO353_03420 -1.2 -3.3 phosphogluconate dehydratase compare
AO353_00460 -1.1 -2.5 TetR family transcriptional regulator compare
AO353_13610 -1.1 -2.8 precorrin isomerase compare
AO353_10435 -1.1 -6.3 chromosome partitioning protein compare
AO353_03415 -1.1 -3.6 glucokinase compare
AO353_13140 -1.1 -3.6 tRNA dimethylallyltransferase compare
AO353_19250 -1.1 -2.2 molybdenum cofactor guanylyltransferase compare
AO353_00750 -1.1 -3.9 GntR family transcriptional regulator compare
AO353_27710 -1.1 -2.2 DNA repair protein compare
AO353_26945 -1.1 -2.1 transcriptional regulator compare
AO353_04565 -1.0 -4.1 nucleoid-associated protein compare
AO353_16805 -1.0 -4.2 recombinase RecA compare
AO353_05520 -1.0 -3.7 nicotinate-nucleotide pyrophosphorylase compare
AO353_17230 -1.0 -5.1 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) (from data) compare
AO353_08485 -1.0 -7.3 threonine dehydratase compare
AO353_14775 -1.0 -4.0 hypothetical protein compare
AO353_03515 -1.0 -1.9 cold-shock protein compare
AO353_14405 -1.0 -6.0 ATPase compare
AO353_10440 -1.0 -2.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_08465 -1.0 -7.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_09150 -1.0 -1.9 cytochrome C2 compare
AO353_13600 -1.0 -3.3 precorrin-6Y C5,15-methyltransferase compare
AO353_10495 -1.0 -2.8 serine hydroxymethyltransferase compare
AO353_02810 -0.9 -4.6 histidine kinase compare
AO353_27585 -0.9 -2.4 DNA repair protein compare
AO353_14060 -0.9 -2.6 hypothetical protein compare
AO353_02550 -0.9 -1.8 TetR family transcriptional regulator compare
AO353_09040 -0.9 -1.0 diaminopimelate epimerase compare
AO353_15725 -0.9 -2.3 hypothetical protein compare
AO353_19770 -0.9 -2.1 peptidase compare
AO353_00810 -0.9 -2.5 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_19265 -0.9 -3.1 hypothetical protein compare
AO353_22415 -0.9 -2.0 alcohol dehydrogenase compare
AO353_09320 -0.9 -4.9 ATP-dependent DNA helicase RecG compare
AO353_12080 -0.9 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_02330 -0.9 -2.5 allantoicase compare
AO353_08880 -0.9 -2.0 exopolyphosphatase compare
AO353_13865 -0.9 -1.6 hypothetical protein compare
AO353_13290 -0.9 -3.7 transglutaminase compare
AO353_18285 -0.9 -1.8 3-phosphoglycerate kinase compare
AO353_20660 -0.9 -2.9 pseudouridine synthase compare
AO353_11530 -0.8 -4.5 diguanylate cyclase compare
AO353_04520 -0.8 -3.0 elongation factor 4 compare
AO353_03525 -0.8 -4.7 quinolinate synthase A compare
AO353_08620 -0.8 -1.9 hypothetical protein compare
AO353_05550 -0.8 -3.6 pseudouridine synthase compare
AO353_13080 -0.8 -4.3 thiosulfate sulfurtransferase compare
AO353_04055 -0.8 -1.2 methionine--tRNA ligase compare
AO353_05415 -0.8 -2.1 hypothetical protein compare
AO353_23170 -0.8 -2.4 short-chain dehydrogenase compare
AO353_18715 -0.8 -1.5 histidine kinase compare
AO353_07495 -0.8 -6.3 acyl-CoA dehydrogenase compare
AO353_11750 -0.8 -1.8 ATPase compare
AO353_20095 -0.8 -3.4 histidine kinase compare
AO353_13285 -0.8 -5.2 molybdopterin oxidoreductase compare
AO353_22280 -0.8 -1.6 hypothetical protein compare
AO353_08640 -0.8 -2.2 hypothetical protein compare
AO353_00975 -0.8 -2.2 hypothetical protein compare
AO353_03605 -0.7 -1.1 FmdB family transcriptional regulator compare
AO353_13245 -0.7 -4.0 hypothetical protein compare
AO353_13590 -0.7 -3.1 cobalt-precorrin-6X reductase compare
AO353_00120 -0.7 -1.8 DNA-binding protein compare
AO353_17160 -0.7 -1.8 aspartate-semialdehyde dehydrogenase compare
AO353_21055 -0.7 -2.5 glycosyl hydrolase compare
AO353_24045 -0.7 -3.2 iron ABC transporter ATP-binding protein compare
AO353_25220 -0.7 -2.2 hypothetical protein compare
AO353_15555 -0.7 -2.5 fumarylacetoacetase compare
AO353_04130 -0.7 -3.9 (2Fe-2S)-binding protein compare
AO353_14585 -0.7 -2.5 ribosomal-protein-alanine acetyltransferase compare
AO353_24255 -0.7 -2.2 hypothetical protein compare
AO353_21735 -0.7 -2.9 IclR family transcriptional regulator compare
AO353_20565 -0.7 -1.3 tRNA-Ala compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source L-Tryptophan in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Tryptophan across organisms